Wall clock time and date at job start Tue Mar 31 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46910 * 2 1 4 4 O 1.42897 * 109.46767 * 240.00311 * 2 1 3 5 5 C 1.42894 * 114.00306 * 89.99817 * 4 2 1 6 6 H 1.09001 * 109.47060 * 30.00135 * 5 4 2 7 7 C 1.50693 * 109.47268 * 269.99904 * 5 4 2 8 8 H 1.08003 * 120.00220 * 119.99871 * 7 5 4 9 9 C 1.37879 * 119.99996 * 299.99830 * 7 5 4 10 10 N 1.31511 * 119.99832 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 120.00241 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47007 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47374 * 119.99685 * 11 9 7 14 14 H 1.48498 * 109.47450 * 239.99963 * 11 9 7 15 15 C 1.53001 * 109.47427 * 149.99583 * 5 4 2 16 16 N 1.46907 * 109.47150 * 293.24997 * 15 5 4 17 17 C 1.46898 * 109.46862 * 64.57495 * 16 15 5 18 18 C 1.46896 * 109.46925 * 184.57291 * 16 15 5 19 19 C 1.46900 * 109.47030 * 304.57433 * 16 15 5 20 20 C 1.50694 * 109.47004 * 120.00005 * 2 1 3 21 21 N 1.29034 * 124.91905 * 75.00249 * 20 2 1 22 22 C 1.31774 * 117.12761 * 179.97438 * 21 20 2 23 23 C 1.33639 * 114.50004 * 0.02562 * 22 21 20 24 24 S 1.70978 * 124.91766 * 254.99937 * 20 2 1 25 25 H 1.08998 * 109.47750 * 60.00109 * 1 2 3 26 26 H 1.09004 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47271 * 299.99729 * 1 2 3 28 28 H 0.97004 * 119.99808 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.46947 * 53.24577 * 15 5 4 30 30 H 1.09001 * 109.47158 * 173.24896 * 15 5 4 31 31 H 1.09000 * 109.47815 * 50.77181 * 17 16 15 32 32 H 1.08995 * 109.47127 * 170.77801 * 17 16 15 33 33 H 1.09009 * 109.47103 * 290.77449 * 17 16 15 34 34 H 1.08995 * 109.47546 * 60.00395 * 18 16 15 35 35 H 1.09000 * 109.46730 * 180.02562 * 18 16 15 36 36 H 1.09004 * 109.47087 * 299.99841 * 18 16 15 37 37 H 1.08999 * 109.46983 * 59.99832 * 19 16 15 38 38 H 1.09000 * 109.46781 * 179.97438 * 19 16 15 39 39 H 1.08998 * 109.46742 * 299.99710 * 19 16 15 40 40 H 1.07995 * 122.75228 * 180.02562 * 22 21 20 41 41 H 1.08000 * 126.03687 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1999 0.1829 -2.2941 6 1 2.4627 1.1831 -1.9495 7 6 0.9285 0.2473 -3.1004 8 1 0.4330 1.1947 -3.2528 9 6 0.3978 -0.9035 -3.6438 10 7 1.0015 -2.0571 -3.4587 11 14 -1.1778 -0.8237 -4.6439 12 1 -1.6553 0.5812 -4.7042 13 1 -0.9164 -1.3175 -6.0198 14 1 -2.2148 -1.6713 -4.0025 15 6 3.3295 -0.3691 -3.1660 16 7 4.6004 -0.2813 -2.4345 17 6 4.5471 -1.1538 -1.2539 18 6 5.6998 -0.7087 -3.3099 19 6 4.8251 1.1064 -2.0081 20 6 2.0323 -0.7104 1.2304 21 7 2.0204 -1.9893 1.4015 22 6 2.4996 -2.4476 2.5403 23 6 2.9399 -1.5028 3.3766 24 16 2.7006 0.0615 2.6019 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.6283 -2.8666 -3.8413 29 1 3.1229 -1.4108 -3.4116 30 1 3.3978 0.2141 -4.0843 31 1 4.2195 -2.1496 -1.5524 32 1 5.5377 -1.2169 -0.8037 33 1 3.8443 -0.7421 -0.5293 34 1 5.7395 -0.0614 -4.1859 35 1 6.6428 -0.6440 -2.7670 36 1 5.5331 -1.7384 -3.6263 37 1 4.0093 1.4235 -1.3585 38 1 5.7679 1.1715 -1.4649 39 1 4.8647 1.7537 -2.8842 40 1 2.5338 -3.5005 2.7782 41 1 3.3667 -1.6688 4.3546 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224004693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:58 Heat of formation + Delta-G solvation = 111.593156 kcal Electronic energy + Delta-G solvation = -22395.107285 eV Core-core repulsion = 19328.231677 eV Total energy + Delta-G solvation = -3066.875609 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.23145 -40.63654 -38.58232 -34.77542 -32.91968 -31.08026 -30.36308 -30.28358 -29.86895 -27.67323 -26.43530 -24.88212 -23.46488 -22.57992 -20.66148 -19.13485 -18.92110 -18.55771 -18.12770 -17.85464 -16.84783 -16.40012 -15.96767 -15.71406 -15.47179 -14.99684 -14.79846 -14.66553 -14.31978 -14.10860 -14.05644 -13.91922 -13.69440 -13.52372 -13.37233 -13.24047 -12.62467 -12.50071 -12.45173 -12.11051 -12.06063 -11.84089 -11.26720 -11.03737 -10.49482 -10.36449 -10.06488 -9.93423 -9.71310 -7.62449 -5.82012 -0.26362 0.33728 0.39133 0.75776 1.94394 2.16412 2.31254 2.34477 2.36841 2.39631 2.44968 3.03023 3.10236 3.17893 3.22349 3.32572 3.45569 3.59788 3.70939 3.75678 3.76243 3.80344 3.92575 4.07902 4.23412 4.25155 4.29662 4.37372 4.40986 4.54902 4.62818 4.66962 5.11718 5.21605 5.27906 5.46805 5.88487 6.28513 6.36464 6.68680 6.92874 7.32139 8.00061 9.40280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.063 0.937 4 O -0.347 6.347 5 C 0.196 3.804 6 H 0.032 0.968 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.095 3.905 10 N -0.854 5.854 11 Si 0.895 3.105 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.275 1.275 15 C -0.004 4.004 16 N -0.271 5.271 17 C -0.037 4.037 18 C -0.040 4.040 19 C -0.046 4.046 20 C 0.049 3.951 21 N -0.440 5.440 22 C 0.038 3.962 23 C -0.258 4.258 24 S 0.100 5.900 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.275 0.725 29 H 0.157 0.843 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.176 0.824 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.765 4.870 3.614 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.113 3.887 3 H 0.081 0.919 4 O -0.267 6.267 5 C 0.140 3.860 6 H 0.050 0.950 7 C -0.602 4.602 8 H 0.092 0.908 9 C -0.115 4.115 10 N -0.487 5.487 11 Si 0.721 3.279 12 H -0.192 1.192 13 H -0.203 1.203 14 H -0.201 1.201 15 C -0.122 4.122 16 N 0.070 4.930 17 C -0.178 4.178 18 C -0.182 4.182 19 C -0.188 4.188 20 C -0.230 4.230 21 N -0.154 5.154 22 C -0.113 4.113 23 C -0.397 4.397 24 S 0.354 5.646 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.175 0.825 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.193 0.807 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 15.794 5.146 3.421 16.960 hybrid contribution -0.947 -0.940 -0.119 1.339 sum 14.847 4.207 3.301 15.781 Atomic orbital electron populations 1.22205 0.93271 1.03927 1.02384 1.20251 0.95385 0.91680 0.81401 0.91896 1.88225 1.84747 1.35671 1.18025 1.20119 0.93319 0.87478 0.85074 0.95024 1.21208 1.08379 0.95289 1.35344 0.90805 1.24952 0.97477 0.94892 0.94227 1.69649 1.39363 0.98794 1.40930 0.86444 0.82474 0.79200 0.79773 1.19197 1.20280 1.20068 1.24981 0.77813 1.11994 0.97418 1.46404 1.16789 1.13969 1.15799 1.24289 1.06153 0.98784 0.88607 1.23988 0.90528 1.06332 0.97385 1.24037 1.06986 0.81683 1.06081 1.27541 1.02314 0.92643 1.00491 1.66293 1.15982 1.12182 1.20933 1.22018 0.98804 1.01692 0.88766 1.27144 1.11705 0.94261 1.06557 1.84086 1.56846 1.11280 1.12390 0.89321 0.91248 0.93380 0.91480 0.82511 0.86475 0.86075 0.88885 0.85227 0.86880 0.87425 0.86577 0.86544 0.87373 0.86615 0.80678 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.30 37.16 0.35 -0.31 16 2 C 0.17 0.27 2.88 -27.89 -0.08 0.19 16 3 H 0.06 -0.07 7.36 -51.93 -0.38 -0.45 16 4 O -0.35 -0.77 6.18 -35.23 -0.22 -0.99 16 5 C 0.20 0.17 1.85 -27.89 -0.05 0.12 16 6 H 0.03 -0.05 5.06 -51.93 -0.26 -0.32 16 7 C -0.57 -3.65 7.39 -34.44 -0.25 -3.91 16 8 H 0.07 0.57 7.81 -52.48 -0.41 0.16 16 9 C 0.09 0.83 5.24 -17.82 -0.09 0.74 16 10 N -0.85 -7.79 10.95 55.43 0.61 -7.18 16 11 Si 0.89 8.29 29.54 -169.99 -5.02 3.27 16 12 H -0.27 -2.59 7.11 56.52 0.40 -2.19 16 13 H -0.28 -2.75 7.11 56.52 0.40 -2.35 16 14 H -0.28 -3.00 7.11 56.52 0.40 -2.60 16 15 C 0.00 0.01 3.53 -3.82 -0.01 0.00 16 16 N -0.27 2.39 0.05 -395.62 -0.02 2.37 16 17 C -0.04 0.26 7.17 60.06 0.43 0.69 16 18 C -0.04 0.46 8.00 60.06 0.48 0.94 16 19 C -0.05 0.49 7.54 60.06 0.45 0.94 16 20 C 0.05 0.06 5.24 -13.46 -0.07 -0.01 16 21 N -0.44 -1.36 10.52 -11.87 -0.12 -1.49 16 22 C 0.04 0.03 11.35 -19.19 -0.22 -0.19 16 23 C -0.26 0.23 11.37 29.12 0.33 0.56 16 24 S 0.10 -0.10 23.18 -107.50 -2.49 -2.60 16 25 H 0.09 0.47 6.82 -51.93 -0.35 0.12 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.27 2.76 8.31 -40.82 -0.34 2.42 16 29 H 0.16 0.03 6.12 -51.93 -0.32 -0.29 16 30 H 0.12 -0.49 8.09 -51.93 -0.42 -0.91 16 31 H 0.12 -0.56 7.94 -51.93 -0.41 -0.98 16 32 H 0.09 -0.91 8.01 -51.93 -0.42 -1.33 16 33 H 0.13 -0.58 4.15 -51.92 -0.22 -0.79 16 34 H 0.11 -1.39 8.12 -51.93 -0.42 -1.81 16 35 H 0.11 -1.44 8.07 -51.93 -0.42 -1.86 16 36 H 0.12 -1.24 8.14 -51.93 -0.42 -1.66 16 37 H 0.12 -1.07 5.86 -51.93 -0.30 -1.37 16 38 H 0.11 -1.39 8.14 -51.93 -0.42 -1.82 16 39 H 0.12 -1.35 8.14 -51.93 -0.42 -1.78 16 40 H 0.18 -0.17 8.06 -52.49 -0.42 -0.59 16 41 H 0.18 -0.56 8.06 -52.49 -0.42 -0.98 16 LS Contribution 331.14 15.07 4.99 4.99 Total: 0.00 -16.02 331.14 -7.45 -23.47 By element: Atomic # 1 Polarization: -15.19 SS G_CDS: -6.43 Total: -21.62 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 1.26 Total: -0.22 kcal Atomic # 7 Polarization: -6.77 SS G_CDS: 0.46 Total: -6.30 kcal Atomic # 8 Polarization: -0.77 SS G_CDS: -0.22 Total: -0.99 kcal Atomic # 14 Polarization: 8.29 SS G_CDS: -5.02 Total: 3.27 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -2.49 Total: -2.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -16.02 -7.45 -23.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224004693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.067 kcal (2) G-P(sol) polarization free energy of solvation -16.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds