Wall clock time and date at job start Tue Mar 31 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46910 * 2 1 4 4 O 1.42897 * 109.46767 * 240.00311 * 2 1 3 5 5 C 1.42894 * 114.00306 * 89.99817 * 4 2 1 6 6 H 1.09001 * 109.47060 * 30.00135 * 5 4 2 7 7 C 1.50693 * 109.47268 * 269.99904 * 5 4 2 8 8 H 1.08003 * 120.00220 * 119.99871 * 7 5 4 9 9 C 1.37879 * 119.99996 * 299.99830 * 7 5 4 10 10 N 1.31511 * 119.99832 * 359.97438 * 9 7 5 11 11 Si 1.86796 * 120.00241 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47007 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47374 * 119.99685 * 11 9 7 14 14 H 1.48498 * 109.47450 * 239.99963 * 11 9 7 15 15 C 1.53001 * 109.47427 * 149.99583 * 5 4 2 16 16 N 1.46907 * 109.47150 * 293.24997 * 15 5 4 17 17 C 1.46898 * 109.46862 * 64.57495 * 16 15 5 18 18 C 1.46896 * 109.46925 * 184.57291 * 16 15 5 19 19 C 1.46900 * 109.47030 * 304.57433 * 16 15 5 20 20 C 1.50694 * 109.47004 * 120.00005 * 2 1 3 21 21 N 1.29034 * 124.91905 * 75.00249 * 20 2 1 22 22 C 1.31774 * 117.12761 * 179.97438 * 21 20 2 23 23 C 1.33639 * 114.50004 * 0.02562 * 22 21 20 24 24 S 1.70978 * 124.91766 * 254.99937 * 20 2 1 25 25 H 1.08998 * 109.47750 * 60.00109 * 1 2 3 26 26 H 1.09004 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47271 * 299.99729 * 1 2 3 28 28 H 0.97004 * 119.99808 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.46947 * 53.24577 * 15 5 4 30 30 H 1.09001 * 109.47158 * 173.24896 * 15 5 4 31 31 H 1.09000 * 109.47815 * 50.77181 * 17 16 15 32 32 H 1.08995 * 109.47127 * 170.77801 * 17 16 15 33 33 H 1.09009 * 109.47103 * 290.77449 * 17 16 15 34 34 H 1.08995 * 109.47546 * 60.00395 * 18 16 15 35 35 H 1.09000 * 109.46730 * 180.02562 * 18 16 15 36 36 H 1.09004 * 109.47087 * 299.99841 * 18 16 15 37 37 H 1.08999 * 109.46983 * 59.99832 * 19 16 15 38 38 H 1.09000 * 109.46781 * 179.97438 * 19 16 15 39 39 H 1.08998 * 109.46742 * 299.99710 * 19 16 15 40 40 H 1.07995 * 122.75228 * 180.02562 * 22 21 20 41 41 H 1.08000 * 126.03687 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1999 0.1829 -2.2941 6 1 2.4627 1.1831 -1.9495 7 6 0.9285 0.2473 -3.1004 8 1 0.4330 1.1947 -3.2528 9 6 0.3978 -0.9035 -3.6438 10 7 1.0015 -2.0571 -3.4587 11 14 -1.1778 -0.8237 -4.6439 12 1 -1.6553 0.5812 -4.7042 13 1 -0.9164 -1.3175 -6.0198 14 1 -2.2148 -1.6713 -4.0025 15 6 3.3295 -0.3691 -3.1660 16 7 4.6004 -0.2813 -2.4345 17 6 4.5471 -1.1538 -1.2539 18 6 5.6998 -0.7087 -3.3099 19 6 4.8251 1.1064 -2.0081 20 6 2.0323 -0.7104 1.2304 21 7 2.0204 -1.9893 1.4015 22 6 2.4996 -2.4476 2.5403 23 6 2.9399 -1.5028 3.3766 24 16 2.7006 0.0615 2.6019 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.6283 -2.8666 -3.8413 29 1 3.1229 -1.4108 -3.4116 30 1 3.3978 0.2141 -4.0843 31 1 4.2195 -2.1496 -1.5524 32 1 5.5377 -1.2169 -0.8037 33 1 3.8443 -0.7421 -0.5293 34 1 5.7395 -0.0614 -4.1859 35 1 6.6428 -0.6440 -2.7670 36 1 5.5331 -1.7384 -3.6263 37 1 4.0093 1.4235 -1.3585 38 1 5.7679 1.1715 -1.4649 39 1 4.8647 1.7537 -2.8842 40 1 2.5338 -3.5005 2.7782 41 1 3.3667 -1.6688 4.3546 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224004693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:56 Heat of formation + Delta-G solvation = 107.449123 kcal Electronic energy + Delta-G solvation = -22395.286984 eV Core-core repulsion = 19328.231677 eV Total energy + Delta-G solvation = -3067.055307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.65063 -40.64053 -38.64210 -35.15047 -33.14314 -31.00283 -30.22161 -29.51110 -29.36785 -27.77118 -26.52177 -24.63512 -23.52109 -22.44218 -20.69350 -19.09029 -18.87782 -18.05106 -17.81150 -17.40440 -16.90057 -16.56740 -16.26406 -15.81764 -15.43153 -15.00300 -14.41833 -14.25319 -14.07312 -13.93521 -13.57651 -13.31811 -13.23292 -13.19888 -13.16456 -13.05318 -12.94551 -12.75858 -12.64047 -12.56205 -12.42977 -12.22641 -11.80197 -11.16582 -10.75072 -10.50708 -10.33483 -10.03510 -9.76151 -8.27135 -6.39993 -0.22909 0.39572 0.80322 1.05712 1.32968 1.46242 1.51929 1.93999 2.33919 2.88651 2.94240 3.11055 3.16706 3.24019 3.45421 3.97150 4.03780 4.16275 4.24833 4.26388 4.33544 4.40031 4.42612 4.43766 4.46803 4.51049 4.60286 4.65731 4.68744 4.79343 4.80870 4.87785 4.98872 5.05935 5.22898 5.37308 5.48321 5.67640 5.96712 6.43762 6.83582 6.98595 7.40101 8.71889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.095 0.905 4 O -0.355 6.355 5 C 0.189 3.811 6 H 0.065 0.935 7 C -0.556 4.556 8 H 0.058 0.942 9 C 0.075 3.925 10 N -0.864 5.864 11 Si 0.905 3.095 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.305 1.305 15 C 0.014 3.986 16 N -0.258 5.258 17 C -0.034 4.034 18 C -0.043 4.043 19 C -0.054 4.054 20 C 0.033 3.967 21 N -0.481 5.481 22 C 0.016 3.984 23 C -0.250 4.250 24 S 0.155 5.845 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.260 0.740 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.182 0.818 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.321 6.869 5.131 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.110 3.890 3 H 0.113 0.887 4 O -0.274 6.274 5 C 0.132 3.868 6 H 0.083 0.917 7 C -0.595 4.595 8 H 0.076 0.924 9 C -0.132 4.132 10 N -0.500 5.500 11 Si 0.735 3.265 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.232 1.232 15 C -0.107 4.107 16 N 0.085 4.915 17 C -0.176 4.176 18 C -0.183 4.183 19 C -0.194 4.194 20 C -0.245 4.245 21 N -0.195 5.195 22 C -0.135 4.135 23 C -0.389 4.389 24 S 0.409 5.591 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.199 0.801 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 19.358 7.169 4.927 21.223 hybrid contribution -2.055 -1.467 -0.488 2.572 sum 17.303 5.702 4.440 18.751 Atomic orbital electron populations 1.22154 0.95960 1.01306 1.02190 1.20302 0.93407 0.93439 0.81804 0.88730 1.88259 1.84521 1.36191 1.18399 1.20206 0.92372 0.89766 0.84426 0.91742 1.21516 1.10461 0.93573 1.33914 0.92351 1.25055 0.97055 0.95836 0.95226 1.69751 1.39280 0.98291 1.42660 0.86374 0.82907 0.77857 0.79344 1.19725 1.21266 1.23229 1.24167 0.79769 1.09657 0.97059 1.45994 1.15147 1.15267 1.15124 1.24145 1.07585 0.97272 0.88552 1.24185 0.90262 1.05974 0.97889 1.24291 1.08124 0.80008 1.07006 1.27326 1.03299 0.92584 1.01316 1.66266 1.17140 1.13608 1.22530 1.22169 0.99921 1.02586 0.88816 1.27503 1.10159 0.94173 1.07052 1.83816 1.55215 1.09981 1.10081 0.91091 0.94989 0.91931 0.92969 0.85888 0.85096 0.89105 0.85126 0.87411 0.85403 0.84242 0.87802 0.87948 0.83981 0.84988 0.80066 0.78103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.30 71.98 0.67 -0.94 16 2 C 0.17 0.61 2.88 29.85 0.09 0.70 16 3 H 0.10 -0.33 7.36 -2.39 -0.02 -0.35 16 4 O -0.35 -1.97 6.18 -148.98 -0.92 -2.89 16 5 C 0.19 0.38 1.85 29.85 0.06 0.44 16 6 H 0.07 -0.31 5.06 -2.39 -0.01 -0.32 16 7 C -0.56 -8.11 7.39 25.60 0.19 -7.92 16 8 H 0.06 0.99 7.81 -2.91 -0.02 0.97 16 9 C 0.07 1.53 5.24 84.66 0.44 1.98 16 10 N -0.86 -18.58 10.95 21.45 0.23 -18.34 16 11 Si 0.91 19.90 29.54 68.60 2.03 21.93 16 12 H -0.27 -6.04 7.11 99.48 0.71 -5.33 16 13 H -0.29 -6.58 7.11 99.48 0.71 -5.87 16 14 H -0.30 -8.05 7.11 99.48 0.71 -7.34 16 15 C 0.01 -0.09 3.53 86.30 0.30 0.21 16 16 N -0.26 4.99 0.05 ******* -0.07 4.92 16 17 C -0.03 0.50 7.17 127.69 0.92 1.42 16 18 C -0.04 1.07 8.00 127.69 1.02 2.10 16 19 C -0.05 1.32 7.54 127.69 0.96 2.28 16 20 C 0.03 0.08 5.24 88.52 0.46 0.55 16 21 N -0.48 -3.49 10.52 -191.46 -2.01 -5.50 16 22 C 0.02 0.03 11.35 83.66 0.95 0.98 16 23 C -0.25 0.81 11.37 66.78 0.76 1.56 16 24 S 0.16 -0.60 23.18 -56.49 -1.31 -1.91 16 25 H 0.07 0.94 6.82 -2.39 -0.02 0.92 16 26 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.26 6.24 8.31 -92.71 -0.77 5.47 16 29 H 0.12 0.24 6.12 -2.39 -0.01 0.22 16 30 H 0.13 -1.21 8.09 -2.39 -0.02 -1.23 16 31 H 0.09 -0.73 7.94 -2.39 -0.02 -0.75 16 32 H 0.13 -2.94 8.01 -2.39 -0.02 -2.96 16 33 H 0.11 -1.03 4.15 -2.38 -0.01 -1.04 16 34 H 0.13 -3.52 8.12 -2.39 -0.02 -3.54 16 35 H 0.14 -4.30 8.07 -2.39 -0.02 -4.32 16 36 H 0.10 -2.28 8.14 -2.38 -0.02 -2.30 16 37 H 0.10 -2.17 5.86 -2.39 -0.01 -2.18 16 38 H 0.14 -4.36 8.14 -2.39 -0.02 -4.38 16 39 H 0.13 -3.59 8.14 -2.39 -0.02 -3.61 16 40 H 0.18 -0.20 8.06 -2.91 -0.02 -0.23 16 41 H 0.20 -1.78 8.06 -2.91 -0.02 -1.80 16 Total: 0.00 -43.28 331.14 5.77 -37.51 By element: Atomic # 1 Polarization: -40.05 SS G_CDS: 1.00 Total: -39.05 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 6.82 Total: 3.34 kcal Atomic # 7 Polarization: -17.08 SS G_CDS: -1.85 Total: -18.93 kcal Atomic # 8 Polarization: -1.97 SS G_CDS: -0.92 Total: -2.89 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: 2.03 Total: 21.93 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -1.31 Total: -1.91 kcal Total: -43.28 5.77 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224004693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.958 kcal (2) G-P(sol) polarization free energy of solvation -43.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds