Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47085 * 2 1 4 4 C 1.52997 * 109.47374 * 239.99565 * 2 1 3 5 5 O 1.45204 * 109.47134 * 119.99719 * 2 1 3 6 6 C 1.34580 * 117.00083 * 60.00108 * 5 2 1 7 7 O 1.21463 * 120.00017 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00251 * 180.02562 * 6 5 2 9 9 C 1.45755 * 117.94642 * 180.02562 * 8 6 5 10 10 C 1.52976 * 110.51529 * 160.95080 * 9 8 6 11 11 C 1.53345 * 108.65304 * 50.68978 * 10 9 8 12 12 H 1.09002 * 109.67371 * 52.25981 * 11 10 9 13 13 O 1.42901 * 109.67447 * 172.75542 * 11 10 9 14 14 C 1.34926 * 117.00077 * 209.50311 * 13 11 10 15 15 H 1.08001 * 119.99809 * 359.97438 * 14 13 11 16 16 C 1.38631 * 119.99968 * 180.02562 * 14 13 11 17 17 N 1.31583 * 119.99783 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00161 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.47121 * 90.00489 * 18 16 14 20 20 H 1.48499 * 109.46940 * 210.00366 * 18 16 14 21 21 H 1.48501 * 109.47108 * 330.00253 * 18 16 14 22 22 C 1.53069 * 108.45474 * 292.50516 * 11 10 9 23 23 C 1.33353 * 117.94511 * 0.02562 * 8 6 5 24 24 O 1.21233 * 118.24340 * 2.20071 * 23 8 6 25 25 H 1.08997 * 109.47208 * 299.99976 * 1 2 3 26 26 H 1.09004 * 109.46929 * 60.00137 * 1 2 3 27 27 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46710 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46607 * 299.99653 * 3 2 1 30 30 H 1.08997 * 109.47078 * 59.99944 * 3 2 1 31 31 H 1.09000 * 109.47655 * 300.00046 * 4 2 1 32 32 H 1.09004 * 109.46849 * 60.00249 * 4 2 1 33 33 H 1.08999 * 109.47255 * 179.97438 * 4 2 1 34 34 H 1.09007 * 109.30101 * 281.23233 * 9 8 6 35 35 H 1.08990 * 109.30158 * 40.82374 * 9 8 6 36 36 H 1.09001 * 109.56593 * 290.97080 * 10 9 8 37 37 H 1.08996 * 109.66032 * 170.46600 * 10 9 8 38 38 H 0.97003 * 119.99646 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.40188 * 169.04476 * 22 11 10 40 40 H 1.08998 * 109.40557 * 288.87455 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6524 -1.9717 1.3384 7 8 0.9513 -2.5087 0.5045 8 7 2.0673 -2.6648 2.4173 9 6 1.6498 -4.0561 2.5374 10 6 2.5560 -4.8052 3.5160 11 6 2.6477 -3.9974 4.8162 12 1 1.6451 -3.7652 5.1754 13 8 3.3494 -4.7544 5.8044 14 6 3.0215 -4.5311 7.0941 15 1 2.2593 -3.8065 7.3398 16 6 3.6638 -5.2310 8.1038 17 7 3.3437 -5.0136 9.3614 18 14 4.9827 -6.4837 7.6788 19 1 6.3075 -5.8140 7.6404 20 1 4.9988 -7.5540 8.7082 21 1 4.6902 -7.0791 6.3502 22 6 3.4054 -2.6991 4.5276 23 6 2.8342 -2.0347 3.3078 24 8 3.0842 -0.8630 3.1225 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2493 34 1 0.6218 -4.0939 2.8983 35 1 1.7063 -4.5349 1.5600 36 1 3.5501 -4.9144 3.0825 37 1 2.1357 -5.7888 3.7255 38 1 3.7933 -5.5031 10.0679 39 1 3.3129 -2.0284 5.3817 40 1 4.4580 -2.9244 4.3565 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378495.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = -164.315718 kcal Electronic energy + Delta-G solvation = -23694.311667 eV Core-core repulsion = 20088.655958 eV Total energy + Delta-G solvation = -3605.655709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.05842 -40.97303 -39.02124 -38.56786 -36.78515 -35.24650 -34.34652 -33.26108 -30.92148 -28.39242 -28.33564 -27.27425 -25.45672 -24.80965 -23.11640 -21.48026 -20.18310 -19.65478 -19.05852 -18.26513 -18.14547 -17.51279 -16.99060 -16.26039 -16.16245 -15.81752 -15.68005 -15.52741 -15.05389 -14.89303 -14.57412 -14.32790 -13.96996 -13.77972 -13.40726 -13.21120 -13.14371 -12.96533 -12.91869 -12.84672 -12.63565 -12.56608 -12.43899 -12.19096 -11.74777 -11.59356 -11.45967 -11.44320 -11.37899 -11.05535 -10.78379 -10.36915 -8.23191 -5.94770 0.58994 0.84112 1.45637 1.47756 1.65464 1.77840 2.40638 2.47350 3.01774 3.09781 3.42237 3.67713 3.71106 3.76471 3.78350 3.91838 4.10814 4.18473 4.28030 4.42780 4.57098 4.59328 4.67372 4.68100 4.73337 4.79542 4.83784 4.84347 4.86108 5.04870 5.10515 5.14600 5.24034 5.25120 5.45034 5.55862 5.63077 6.15885 6.54378 6.89384 7.15754 7.78028 8.92195 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037869 B = 0.003805 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.206345 B = 7357.031801 C = 7611.632123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 C -0.133 4.133 4 C -0.176 4.176 5 O -0.333 6.333 6 C 0.644 3.356 7 O -0.544 6.544 8 N -0.543 5.543 9 C 0.119 3.881 10 C -0.123 4.123 11 C 0.096 3.904 12 H 0.053 0.947 13 O -0.325 6.325 14 C -0.355 4.355 15 H 0.052 0.948 16 C -0.014 4.014 17 N -0.954 5.954 18 Si 0.973 3.027 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.251 1.251 22 C -0.146 4.146 23 C 0.528 3.472 24 O -0.513 6.513 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.273 0.727 39 H 0.096 0.904 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 6.237 -21.700 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.233 4.233 5 O -0.247 6.247 6 C 0.402 3.598 7 O -0.433 6.433 8 N -0.293 5.293 9 C 0.000 4.000 10 C -0.160 4.160 11 C 0.038 3.962 12 H 0.072 0.928 13 O -0.240 6.240 14 C -0.434 4.434 15 H 0.070 0.930 16 C -0.207 4.207 17 N -0.601 5.601 18 Si 0.797 3.203 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.175 1.175 22 C -0.186 4.186 23 C 0.319 3.681 24 O -0.387 6.387 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.223 6.615 -22.015 23.212 hybrid contribution 0.211 -0.168 0.684 0.735 sum -3.013 6.447 -21.330 22.486 Atomic orbital electron populations 1.22458 0.93367 1.03885 1.03706 1.22684 0.95177 0.93156 0.82169 1.21841 1.02080 0.91057 1.04029 1.22450 1.01475 1.02304 0.97060 1.86880 1.69634 1.21747 1.46394 1.18651 0.78054 0.81661 0.81472 1.90886 1.39302 1.70795 1.42305 1.45960 1.48105 1.15136 1.20053 1.21833 0.99705 0.75686 1.02782 1.21998 1.01836 1.00267 0.91918 1.22051 0.94547 0.89882 0.89766 0.92850 1.85236 1.62604 1.62428 1.13745 1.20358 1.20040 1.22018 0.80955 0.93018 1.25194 1.01042 1.00698 0.93768 1.69805 1.45463 1.45168 0.99675 0.85149 0.78498 0.78192 0.78462 1.20208 1.21293 1.17513 1.22261 1.03266 0.99143 0.93943 1.20858 0.76513 0.86673 0.84055 1.90795 1.56294 1.16828 1.74786 0.92649 0.88293 0.91480 0.91937 0.87211 0.92175 0.91424 0.88359 0.92353 0.88687 0.86357 0.89120 0.86602 0.91805 0.88556 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.56 8.37 71.98 0.60 -2.96 16 2 C 0.10 2.33 1.13 -10.79 -0.01 2.31 16 3 C -0.13 -2.34 8.85 71.98 0.64 -1.70 16 4 C -0.18 -3.40 8.37 71.98 0.60 -2.80 16 5 O -0.33 -10.13 7.09 -47.07 -0.33 -10.47 16 6 C 0.64 19.23 7.53 129.79 0.98 20.21 16 7 O -0.54 -15.93 11.43 19.96 0.23 -15.70 16 8 N -0.54 -15.49 2.92 -889.42 -2.60 -18.09 16 9 C 0.12 2.67 5.91 86.51 0.51 3.18 16 10 C -0.12 -3.07 5.69 30.70 0.17 -2.89 16 11 C 0.10 3.37 2.72 30.73 0.08 3.45 16 12 H 0.05 1.94 7.80 -2.39 -0.02 1.92 16 13 O -0.32 -14.91 8.27 -81.95 -0.68 -15.59 16 14 C -0.36 -19.56 10.24 67.91 0.70 -18.86 16 15 H 0.05 3.08 7.88 -2.91 -0.02 3.05 16 16 C -0.01 -0.78 5.49 84.82 0.47 -0.31 16 17 N -0.95 -57.85 13.96 21.61 0.30 -57.54 16 18 Si 0.97 44.69 28.62 68.60 1.96 46.66 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.25 -10.93 7.11 99.48 0.71 -10.23 16 22 C -0.15 -4.86 5.67 29.71 0.17 -4.70 16 23 C 0.53 17.17 7.41 87.72 0.65 17.82 16 24 O -0.51 -19.37 14.78 20.67 0.31 -19.07 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.61 5.88 -2.39 -0.01 1.59 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.56 5.88 -2.39 -0.01 1.55 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.12 2.24 7.61 -2.39 -0.02 2.22 16 36 H 0.09 2.10 8.12 -2.39 -0.02 2.08 16 37 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 Total: -1.00 -69.53 326.84 5.78 -63.76 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.03 Total: 13.29 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 5.56 Total: 12.75 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -2.29 Total: -75.63 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -0.48 Total: -60.82 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.96 Total: 46.66 kcal Total: -69.53 5.78 -63.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378495.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.560 kcal (2) G-P(sol) polarization free energy of solvation -69.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds