Wall clock time and date at job start Tue Mar 31 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.53001 * 109.47248 * 239.99853 * 2 1 3 5 5 O 1.45204 * 109.47402 * 119.99908 * 2 1 3 6 6 C 1.34594 * 116.99619 * 59.99640 * 5 2 1 7 7 O 1.21460 * 119.99973 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99403 * 179.97438 * 6 5 2 9 9 C 1.45756 * 117.93997 * 180.02562 * 8 6 5 10 10 C 1.52921 * 110.48705 * 199.07470 * 9 8 6 11 11 C 1.53344 * 108.67502 * 309.25337 * 10 9 8 12 12 H 1.09002 * 109.67069 * 307.75627 * 11 10 9 13 13 O 1.42900 * 109.67310 * 187.26317 * 11 10 9 14 14 C 1.34922 * 117.00165 * 150.00077 * 13 11 10 15 15 H 1.08001 * 120.00176 * 359.97438 * 14 13 11 16 16 C 1.38636 * 120.00046 * 179.97438 * 14 13 11 17 17 N 1.31584 * 120.00267 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00060 * 179.72210 * 16 14 13 19 19 H 1.48494 * 109.47228 * 180.27624 * 18 16 14 20 20 H 1.48506 * 109.47130 * 300.27812 * 18 16 14 21 21 H 1.48493 * 109.46907 * 60.27400 * 18 16 14 22 22 C 1.53072 * 108.42551 * 67.52936 * 11 10 9 23 23 C 1.33348 * 117.95431 * 0.02882 * 8 6 5 24 24 O 1.21234 * 118.24265 * 357.79432 * 23 8 6 25 25 H 1.08998 * 109.47015 * 300.00215 * 1 2 3 26 26 H 1.08996 * 109.46809 * 59.99994 * 1 2 3 27 27 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46971 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47224 * 299.99751 * 3 2 1 30 30 H 1.08998 * 109.47292 * 59.99954 * 3 2 1 31 31 H 1.08998 * 109.47272 * 300.00021 * 4 2 1 32 32 H 1.09005 * 109.46994 * 60.00155 * 4 2 1 33 33 H 1.09003 * 109.46871 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.29907 * 78.76938 * 9 8 6 35 35 H 1.08995 * 109.30500 * 319.38841 * 9 8 6 36 36 H 1.08997 * 109.60543 * 189.49342 * 10 9 8 37 37 H 1.09004 * 109.73374 * 69.08922 * 10 9 8 38 38 H 0.97005 * 119.99693 * 359.72009 * 17 16 14 39 39 H 1.08999 * 109.39776 * 71.23160 * 22 11 10 40 40 H 1.09000 * 109.39724 * 190.96880 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9719 1.3383 7 8 0.9520 -2.5090 0.5039 8 7 2.0682 -2.6652 2.4166 9 6 1.6505 -4.0564 2.5368 10 6 1.7936 -4.5353 3.9820 11 6 3.2052 -4.1945 4.4747 12 1 3.9425 -4.5775 3.7692 13 8 3.4203 -4.7799 5.7604 14 6 4.6859 -5.1304 6.0699 15 1 5.4815 -4.9649 5.3584 16 6 4.9653 -5.7031 7.3012 17 7 3.9961 -5.9053 8.1679 18 14 6.7163 -6.1955 7.7266 19 1 6.7472 -6.7868 9.0884 20 1 7.2026 -7.1950 6.7417 21 1 7.5910 -4.9962 7.6876 22 6 3.3283 -2.6720 4.5745 23 6 2.8360 -2.0355 3.3067 24 8 3.1530 -0.8874 3.0804 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 2.2707 -4.6760 1.8889 35 1 0.6091 -4.1479 2.2284 36 1 1.6410 -5.6136 4.0268 37 1 1.0563 -4.0353 4.6101 38 1 3.0867 -5.6499 7.9468 39 1 2.7323 -2.3149 5.4144 40 1 4.3727 -2.4029 4.7330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:46 Heat of formation + Delta-G solvation = -151.525554 kcal Electronic energy + Delta-G solvation = -23686.365518 eV Core-core repulsion = 20081.264432 eV Total energy + Delta-G solvation = -3605.101086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84425 -39.77367 -37.53702 -37.15769 -35.42828 -34.19687 -32.74278 -31.08333 -29.61001 -27.55665 -27.54718 -25.23069 -23.78928 -23.55744 -21.90979 -20.32691 -18.89033 -18.10969 -17.83514 -17.07595 -16.86088 -15.88416 -15.40829 -15.13301 -14.77635 -14.57259 -14.30307 -14.16494 -13.73465 -13.66706 -13.62053 -12.95547 -12.63880 -12.35851 -12.31024 -12.13042 -12.05246 -12.01624 -11.66696 -11.58708 -11.37134 -10.84682 -10.76241 -10.47459 -10.36591 -10.28699 -10.16028 -9.94663 -9.64045 -9.59652 -9.29576 -8.10297 -6.38771 -3.73099 1.86621 1.94795 3.01479 3.36746 3.40422 3.54308 3.58282 4.27679 4.55086 4.57984 4.60988 4.73195 4.76036 4.86742 5.08905 5.27880 5.32482 5.35760 5.36783 5.44057 5.52630 5.54446 5.59019 5.67149 5.68560 5.82657 5.87917 5.95794 6.03001 6.08751 6.15094 6.23322 6.35790 6.45655 6.52493 6.78644 7.58469 7.84105 8.05796 8.72948 9.31633 9.91043 11.08486 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036388 B = 0.003694 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.293924 B = 7578.846333 C = 7890.263528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.119 3.881 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.313 6.313 6 C 0.647 3.353 7 O -0.544 6.544 8 N -0.543 5.543 9 C 0.118 3.882 10 C -0.133 4.133 11 C 0.103 3.897 12 H 0.054 0.946 13 O -0.300 6.300 14 C -0.457 4.457 15 H 0.056 0.944 16 C -0.003 4.003 17 N -0.910 5.910 18 Si 1.089 2.911 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.153 4.153 23 C 0.519 3.481 24 O -0.488 6.488 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.276 0.724 39 H 0.112 0.888 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 9.176 -15.867 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.082 3.918 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.225 6.225 6 C 0.405 3.595 7 O -0.433 6.433 8 N -0.293 5.293 9 C -0.002 4.002 10 C -0.171 4.171 11 C 0.043 3.957 12 H 0.072 0.928 13 O -0.216 6.216 14 C -0.535 4.535 15 H 0.074 0.926 16 C -0.204 4.204 17 N -0.548 5.548 18 Si 0.915 3.085 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.214 1.214 22 C -0.193 4.193 23 C 0.310 3.690 24 O -0.360 6.360 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.896 9.026 -14.952 18.139 hybrid contribution -0.839 0.738 -1.546 1.907 sum -5.735 9.764 -16.498 20.011 Atomic orbital electron populations 1.22502 0.94081 1.04792 1.02561 1.22234 0.94389 0.92278 0.82856 1.21795 1.02458 0.92294 1.02829 1.22503 1.01732 1.03193 0.96513 1.86895 1.69215 1.21798 1.44628 1.18594 0.77941 0.81390 0.81583 1.90882 1.39525 1.70792 1.42086 1.45949 1.48526 1.14373 1.20477 1.21658 1.02357 0.77336 0.98890 1.22018 0.98610 1.03628 0.92845 1.21703 0.94764 0.89647 0.89556 0.92844 1.85412 1.29333 1.78217 1.28589 1.21744 0.82933 1.44985 1.03863 0.92625 1.26058 1.06745 0.96420 0.91136 1.70589 1.02230 1.45508 1.36463 0.83193 0.72278 0.76377 0.76615 1.20279 1.21473 1.21446 1.22408 1.04532 0.99205 0.93109 1.21115 0.76263 0.86560 0.85106 1.90796 1.53099 1.17217 1.74897 0.92086 0.91116 0.89660 0.91362 0.90392 0.91394 0.89654 0.91121 0.92069 0.90000 0.88566 0.88172 0.90356 0.91420 0.86986 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 2 C 0.12 1.46 1.13 -90.62 -0.10 1.35 16 3 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 4 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 5 O -0.31 -4.98 7.09 -48.38 -0.34 -5.32 16 6 C 0.65 10.35 7.54 54.05 0.41 10.76 16 7 O -0.54 -8.62 11.43 -19.24 -0.22 -8.84 16 8 N -0.54 -8.49 2.92 -121.99 -0.36 -8.84 16 9 C 0.12 1.57 5.91 -4.48 -0.03 1.54 16 10 C -0.13 -2.01 5.68 -26.59 -0.15 -2.16 16 11 C 0.10 1.98 2.73 -26.52 -0.07 1.91 16 12 H 0.05 1.03 7.79 -51.93 -0.40 0.62 16 13 O -0.30 -7.65 8.85 -16.49 -0.15 -7.80 16 14 C -0.46 -12.57 9.79 30.88 0.30 -12.27 16 15 H 0.06 1.47 7.64 -52.49 -0.40 1.07 16 16 C 0.00 -0.07 5.49 -17.51 -0.10 -0.17 16 17 N -0.91 -27.64 13.70 55.48 0.76 -26.88 16 18 Si 1.09 24.48 29.92 -169.99 -5.09 19.40 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.15 -2.72 5.67 -28.10 -0.16 -2.88 16 23 C 0.52 8.95 7.41 -11.88 -0.09 8.86 16 24 O -0.49 -9.46 14.78 -19.03 -0.28 -9.75 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.08 5.88 -51.93 -0.31 0.78 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.10 5.88 -51.93 -0.31 0.79 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.15 7.60 -51.93 -0.39 0.75 16 36 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 38 H 0.28 8.50 7.97 -40.82 -0.33 8.18 16 39 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 40 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -32.86 327.40 -5.78 -38.64 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.00 Total: 1.93 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 0.97 Total: 2.52 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.40 Total: -35.72 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.99 Total: -31.70 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.09 Total: 19.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.86 -5.78 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.891 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds