Wall clock time and date at job start Tue Mar 31 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.53001 * 109.47248 * 239.99853 * 2 1 3 5 5 O 1.45204 * 109.47402 * 119.99908 * 2 1 3 6 6 C 1.34594 * 116.99619 * 59.99640 * 5 2 1 7 7 O 1.21460 * 119.99973 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99403 * 179.97438 * 6 5 2 9 9 C 1.45756 * 117.93997 * 180.02562 * 8 6 5 10 10 C 1.52921 * 110.48705 * 199.07470 * 9 8 6 11 11 C 1.53344 * 108.67502 * 309.25337 * 10 9 8 12 12 H 1.09002 * 109.67069 * 307.75627 * 11 10 9 13 13 O 1.42900 * 109.67310 * 187.26317 * 11 10 9 14 14 C 1.34922 * 117.00165 * 150.00077 * 13 11 10 15 15 H 1.08001 * 120.00176 * 359.97438 * 14 13 11 16 16 C 1.38636 * 120.00046 * 179.97438 * 14 13 11 17 17 N 1.31584 * 120.00267 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00060 * 179.72210 * 16 14 13 19 19 H 1.48494 * 109.47228 * 180.27624 * 18 16 14 20 20 H 1.48506 * 109.47130 * 300.27812 * 18 16 14 21 21 H 1.48493 * 109.46907 * 60.27400 * 18 16 14 22 22 C 1.53072 * 108.42551 * 67.52936 * 11 10 9 23 23 C 1.33348 * 117.95431 * 0.02882 * 8 6 5 24 24 O 1.21234 * 118.24265 * 357.79432 * 23 8 6 25 25 H 1.08998 * 109.47015 * 300.00215 * 1 2 3 26 26 H 1.08996 * 109.46809 * 59.99994 * 1 2 3 27 27 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46971 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47224 * 299.99751 * 3 2 1 30 30 H 1.08998 * 109.47292 * 59.99954 * 3 2 1 31 31 H 1.08998 * 109.47272 * 300.00021 * 4 2 1 32 32 H 1.09005 * 109.46994 * 60.00155 * 4 2 1 33 33 H 1.09003 * 109.46871 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.29907 * 78.76938 * 9 8 6 35 35 H 1.08995 * 109.30500 * 319.38841 * 9 8 6 36 36 H 1.08997 * 109.60543 * 189.49342 * 10 9 8 37 37 H 1.09004 * 109.73374 * 69.08922 * 10 9 8 38 38 H 0.97005 * 119.99693 * 359.72009 * 17 16 14 39 39 H 1.08999 * 109.39776 * 71.23160 * 22 11 10 40 40 H 1.09000 * 109.39724 * 190.96880 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9719 1.3383 7 8 0.9520 -2.5090 0.5039 8 7 2.0682 -2.6652 2.4166 9 6 1.6505 -4.0564 2.5368 10 6 1.7936 -4.5353 3.9820 11 6 3.2052 -4.1945 4.4747 12 1 3.9425 -4.5775 3.7692 13 8 3.4203 -4.7799 5.7604 14 6 4.6859 -5.1304 6.0699 15 1 5.4815 -4.9649 5.3584 16 6 4.9653 -5.7031 7.3012 17 7 3.9961 -5.9053 8.1679 18 14 6.7163 -6.1955 7.7266 19 1 6.7472 -6.7868 9.0884 20 1 7.2026 -7.1950 6.7417 21 1 7.5910 -4.9962 7.6876 22 6 3.3283 -2.6720 4.5745 23 6 2.8360 -2.0355 3.3067 24 8 3.1530 -0.8874 3.0804 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 2.2707 -4.6760 1.8889 35 1 0.6091 -4.1479 2.2284 36 1 1.6410 -5.6136 4.0268 37 1 1.0563 -4.0353 4.6101 38 1 3.0867 -5.6499 7.9468 39 1 2.7323 -2.3149 5.4144 40 1 4.3727 -2.4029 4.7330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:46 Heat of formation + Delta-G solvation = -171.924022 kcal Electronic energy + Delta-G solvation = -23687.250061 eV Core-core repulsion = 20081.264432 eV Total energy + Delta-G solvation = -3605.985630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.11118 -41.01359 -39.02267 -38.59519 -36.84242 -35.29862 -34.38723 -32.90843 -30.98188 -28.41319 -28.35562 -26.86222 -25.59031 -24.86945 -23.24369 -21.49854 -20.25627 -19.93923 -19.15462 -18.27910 -18.13783 -17.17970 -16.99083 -16.39304 -16.15217 -16.01027 -15.74301 -15.42343 -15.38375 -14.98814 -14.60065 -14.53875 -13.90335 -13.55216 -13.35241 -13.21381 -13.00110 -12.93934 -12.85951 -12.65285 -12.58707 -12.46868 -12.34403 -12.03566 -11.88703 -11.59353 -11.47066 -11.43656 -11.27283 -11.11235 -10.83929 -10.18131 -8.60986 -5.92488 0.53230 0.78808 1.56838 1.66932 1.72381 1.84506 2.35961 2.51003 3.10624 3.21237 3.39704 3.62735 3.67391 3.73115 3.74273 3.89659 4.04374 4.15681 4.20775 4.41209 4.54869 4.57387 4.60257 4.62706 4.71326 4.75639 4.79128 4.81846 4.81994 4.97807 5.06749 5.08224 5.21991 5.22694 5.40724 5.43231 5.50077 6.48303 6.50289 6.84657 7.19797 7.88490 8.87664 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036388 B = 0.003694 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.293924 B = 7578.846333 C = 7890.263528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 C -0.133 4.133 4 C -0.177 4.177 5 O -0.333 6.333 6 C 0.644 3.356 7 O -0.543 6.543 8 N -0.543 5.543 9 C 0.122 3.878 10 C -0.122 4.122 11 C 0.095 3.905 12 H 0.053 0.947 13 O -0.332 6.332 14 C -0.456 4.456 15 H 0.062 0.938 16 C -0.061 4.061 17 N -0.942 5.942 18 Si 1.135 2.865 19 H -0.282 1.282 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.143 4.143 23 C 0.529 3.471 24 O -0.511 6.511 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.258 0.742 39 H 0.110 0.890 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 9.667 -17.790 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.234 4.234 5 O -0.246 6.246 6 C 0.402 3.598 7 O -0.432 6.432 8 N -0.292 5.292 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.036 3.964 12 H 0.071 0.929 13 O -0.248 6.248 14 C -0.534 4.534 15 H 0.080 0.920 16 C -0.254 4.254 17 N -0.582 5.582 18 Si 0.955 3.045 19 H -0.208 1.208 20 H -0.191 1.191 21 H -0.194 1.194 22 C -0.183 4.183 23 C 0.320 3.680 24 O -0.385 6.385 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.829 9.523 -16.930 20.016 hybrid contribution -0.943 0.665 -1.085 1.584 sum -5.772 10.188 -18.015 21.486 Atomic orbital electron populations 1.22455 0.93165 1.03907 1.03824 1.22705 0.95309 0.93151 0.82064 1.21841 1.02030 0.90976 1.04130 1.22457 1.01407 1.02297 0.97215 1.86883 1.69586 1.21667 1.46483 1.18626 0.77982 0.81660 0.81502 1.90886 1.39461 1.70901 1.41945 1.45930 1.48033 1.15075 1.20184 1.21775 1.03959 0.76263 0.97692 1.21926 0.95814 1.04269 0.93931 1.22021 0.97282 0.89946 0.87131 0.92875 1.85365 1.28568 1.78974 1.31880 1.22105 0.83942 1.43515 1.03866 0.91999 1.27748 1.09930 0.96317 0.91385 1.70732 1.01892 1.48096 1.37528 0.82638 0.68089 0.77235 0.76566 1.20768 1.19143 1.19441 1.22213 1.04044 0.98297 0.93750 1.20793 0.76206 0.86121 0.84871 1.90788 1.54171 1.18128 1.75410 0.92439 0.88247 0.91506 0.92066 0.87133 0.92010 0.91532 0.88227 0.92524 0.88456 0.86478 0.87411 0.90045 0.93328 0.87155 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 8.37 71.98 0.60 -2.92 16 2 C 0.10 2.35 1.13 -10.79 -0.01 2.34 16 3 C -0.13 -2.35 8.85 71.98 0.64 -1.72 16 4 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 5 O -0.33 -10.33 7.09 -47.20 -0.33 -10.66 16 6 C 0.64 19.89 7.54 129.79 0.98 20.86 16 7 O -0.54 -16.40 11.43 19.97 0.23 -16.17 16 8 N -0.54 -16.33 2.92 -889.53 -2.60 -18.93 16 9 C 0.12 3.02 5.91 86.49 0.51 3.53 16 10 C -0.12 -3.53 5.68 30.68 0.17 -3.36 16 11 C 0.10 3.63 2.73 30.73 0.08 3.71 16 12 H 0.05 2.02 7.79 -2.39 -0.02 2.00 16 13 O -0.33 -17.11 8.85 -81.91 -0.72 -17.84 16 14 C -0.46 -25.17 9.79 67.92 0.66 -24.51 16 15 H 0.06 3.25 7.64 -2.91 -0.02 3.22 16 16 C -0.06 -3.43 5.49 84.83 0.47 -2.97 16 17 N -0.94 -58.34 13.70 21.61 0.30 -58.04 16 18 Si 1.14 48.69 29.92 68.60 2.05 50.74 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 22 C -0.14 -5.12 5.67 29.71 0.17 -4.95 16 23 C 0.53 18.04 7.41 87.71 0.65 18.69 16 24 O -0.51 -19.77 14.78 20.66 0.31 -19.46 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.60 5.88 -2.39 -0.01 1.58 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.61 5.88 -2.39 -0.01 1.59 16 32 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.12 2.49 7.60 -2.39 -0.02 2.47 16 36 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.08 2.32 8.12 -2.38 -0.02 2.30 16 38 H 0.26 16.44 7.97 -92.70 -0.74 15.70 16 39 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 40 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 Total: -1.00 -71.38 327.40 5.82 -65.57 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.06 Total: 19.04 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.53 Total: 5.75 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -2.30 Total: -76.97 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: -0.53 Total: -64.13 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.05 Total: 50.74 kcal Total: -71.38 5.82 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.356 kcal (2) G-P(sol) polarization free energy of solvation -71.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds