Wall clock time and date at job start Tue Mar 31 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47541 * 15.40318 * 3 2 1 5 5 N 1.46895 * 109.47172 * 180.39712 * 4 3 2 6 6 C 1.46895 * 111.00144 * 61.21038 * 5 4 3 7 7 C 1.50701 * 109.47266 * 66.04936 * 6 5 4 8 8 H 1.07995 * 119.99823 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99855 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00237 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00019 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46678 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47130 * 119.99590 * 11 9 7 14 14 H 1.48492 * 109.47277 * 239.99913 * 11 9 7 15 15 C 1.46901 * 110.99936 * 297.25347 * 5 4 3 16 16 C 1.50694 * 109.47169 * 289.28177 * 15 5 4 17 17 N 1.32517 * 125.18146 * 275.35083 * 16 15 5 18 18 C 1.32840 * 109.68202 * 180.02562 * 17 16 15 19 19 C 1.40654 * 132.89002 * 180.02562 * 18 17 16 20 20 C 1.36188 * 119.26597 * 179.97438 * 19 18 17 21 21 C 1.40275 * 119.62244 * 0.02562 * 20 19 18 22 22 C 1.35191 * 120.21327 * 0.02562 * 21 20 19 23 23 N 1.35926 * 120.56667 * 359.97438 * 22 21 20 24 24 N 1.31251 * 125.18245 * 95.39993 * 16 15 5 25 25 H 1.09005 * 109.46855 * 255.40139 * 3 2 1 26 26 H 1.09002 * 109.46973 * 135.40850 * 3 2 1 27 27 H 1.08997 * 109.47138 * 60.39069 * 4 3 2 28 28 H 1.09002 * 109.46858 * 300.39343 * 4 3 2 29 29 H 1.09007 * 109.47073 * 186.04349 * 6 5 4 30 30 H 1.09005 * 109.47282 * 306.04214 * 6 5 4 31 31 H 0.97003 * 120.00121 * 180.02562 * 10 9 7 32 32 H 1.09005 * 109.47140 * 169.27582 * 15 5 4 33 33 H 1.09002 * 109.47149 * 49.28287 * 15 5 4 34 34 H 1.07996 * 120.36877 * 359.97438 * 19 18 17 35 35 H 1.08005 * 120.19069 * 180.29328 * 20 19 18 36 36 H 1.08000 * 119.89677 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.71292 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3897 -0.3831 5 7 4.5876 -1.3916 -0.3739 6 6 5.1060 -1.0778 0.9643 7 6 4.7402 -2.1863 1.9174 8 1 4.1784 -3.0384 1.5645 9 6 5.1218 -2.1120 3.2402 10 7 5.8056 -1.0741 3.6701 11 14 4.6678 -3.4858 4.4219 12 1 3.9030 -4.5309 3.6953 13 1 5.9050 -4.0807 4.9881 14 1 3.8340 -2.9374 5.5215 15 6 5.1215 -0.4606 -1.3770 16 6 4.8716 -1.0116 -2.7571 17 7 5.6495 -1.8821 -3.3841 18 6 5.1410 -2.1560 -4.5804 19 6 5.5580 -2.9966 -5.6281 20 6 4.8072 -3.0697 -6.7620 21 6 3.6341 -2.3077 -6.8671 22 6 3.2509 -1.5049 -5.8492 23 7 3.9940 -1.4257 -4.7138 24 7 3.8506 -0.7019 -3.5216 25 1 2.9711 0.2599 0.9945 26 1 2.9709 0.7327 -0.7215 27 1 2.7612 -1.6460 -1.3804 28 1 2.7499 -2.1227 0.3345 29 1 6.1908 -0.9800 0.9200 30 1 4.6707 -0.1410 1.3122 31 1 6.0744 -1.0220 4.6007 32 1 6.1936 -0.3369 -1.2237 33 1 4.6264 0.5053 -1.2762 34 1 6.4635 -3.5777 -5.5346 35 1 5.1108 -3.7139 -7.5739 36 1 3.0356 -2.3620 -7.7645 37 1 2.3460 -0.9221 -5.9386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233073358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:47 Heat of formation + Delta-G solvation = 158.889318 kcal Electronic energy + Delta-G solvation = -21443.906521 eV Core-core repulsion = 18224.160456 eV Total energy + Delta-G solvation = -3219.746065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61580 -38.43125 -37.42569 -35.87795 -33.60194 -32.72739 -31.47219 -30.29579 -29.80570 -27.94792 -25.70143 -23.99773 -23.52857 -23.00344 -21.13265 -19.68715 -17.99237 -17.45191 -16.99900 -16.39666 -16.23320 -15.93021 -15.21766 -14.94679 -14.63266 -14.28064 -13.88679 -13.64138 -13.14762 -12.88680 -12.81956 -12.29989 -12.18203 -12.04066 -11.99382 -11.55738 -11.41800 -11.28414 -11.20226 -11.14054 -10.74227 -10.65591 -10.21873 -9.99610 -9.86818 -9.46452 -9.27926 -8.48465 -8.32164 -7.46224 -6.07910 -4.08928 0.53800 0.88794 2.10164 2.70788 3.12296 3.16015 3.30742 3.33719 3.39056 3.43931 3.91112 4.06390 4.35150 4.42812 4.49404 4.61374 4.82108 4.98027 5.11679 5.18688 5.29165 5.44476 5.55547 5.61911 5.71542 5.82314 5.85610 5.97333 6.12819 6.26204 6.34352 6.45944 6.60625 6.73912 7.10196 7.16821 7.69551 7.86420 7.96690 8.03404 8.12659 8.39289 8.98066 9.55940 11.02616 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.004286 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.936243 B = 6531.576398 C = 7427.404842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.228 3.772 3 C -0.073 4.073 4 C 0.072 3.928 5 N -0.518 5.518 6 C 0.188 3.812 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.059 3.941 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.133 3.867 16 C 0.287 3.713 17 N -0.522 5.522 18 C 0.275 3.725 19 C -0.102 4.102 20 C -0.069 4.069 21 C -0.168 4.168 22 C 0.117 3.883 23 N -0.292 5.292 24 N -0.341 5.341 25 H 0.124 0.876 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.005 0.995 31 H 0.262 0.738 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 -0.214 -20.936 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.089 4.089 3 C -0.115 4.115 4 C -0.059 4.059 5 N -0.241 5.241 6 C 0.064 3.936 7 C -0.547 4.547 8 H 0.083 0.917 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.002 3.998 16 C 0.007 3.993 17 N -0.251 5.251 18 C 0.020 3.980 19 C -0.124 4.124 20 C -0.095 4.095 21 C -0.191 4.191 22 C -0.011 4.011 23 N -0.067 5.067 24 N -0.173 5.173 25 H 0.142 0.858 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.666 -0.176 -20.332 20.507 hybrid contribution -0.074 -0.019 0.660 0.664 sum -2.741 -0.195 -19.672 19.863 Atomic orbital electron populations 1.81119 1.13171 1.09639 1.10163 1.29208 0.95221 0.92408 0.92111 1.20212 0.81737 1.03214 1.06322 1.22069 0.88805 0.93566 1.01426 1.62286 1.05231 1.48562 1.08045 1.19922 0.96101 0.96186 0.81369 1.21131 1.35161 1.05616 0.92758 0.91705 1.24927 0.95159 0.95932 0.98241 1.69944 1.38317 1.29141 1.16146 0.86482 0.78211 0.82173 0.80843 1.19666 1.20968 1.21144 1.20534 1.02517 0.93674 0.83093 1.24561 0.87006 0.90914 0.96845 1.70851 1.31111 1.19782 1.03328 1.21941 0.86141 0.95150 0.94733 1.20332 1.02383 0.99138 0.90500 1.21185 0.93462 0.97470 0.97333 1.20884 0.99455 0.99404 0.99339 1.21514 0.96885 0.99433 0.83280 1.47795 1.17801 1.28805 1.12268 1.78555 1.24850 1.21860 0.92012 0.85799 0.88149 0.92064 0.88802 0.94337 0.97736 0.92879 0.87711 0.92150 0.82725 0.83549 0.82622 0.81593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.80 18.54 42.15 0.78 -8.02 16 2 C 0.23 3.92 15.43 -20.76 -0.32 3.60 16 3 C -0.07 -1.16 5.06 -29.52 -0.15 -1.31 16 4 C 0.07 1.30 4.96 -3.83 -0.02 1.28 16 5 N -0.52 -10.21 4.66 -237.52 -1.11 -11.32 16 6 C 0.19 4.34 4.49 -4.98 -0.02 4.32 16 7 C -0.51 -13.25 8.50 -34.44 -0.29 -13.54 16 8 H 0.06 1.71 7.11 -52.49 -0.37 1.34 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -25.07 13.29 55.43 0.74 -24.33 16 11 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.13 2.25 5.45 -4.98 -0.03 2.22 16 16 C 0.29 4.98 6.80 -157.04 -1.07 3.92 16 17 N -0.52 -9.26 11.25 -10.16 -0.11 -9.37 16 18 C 0.27 4.00 7.88 -156.33 -1.23 2.77 16 19 C -0.10 -1.02 10.11 -39.41 -0.40 -1.42 16 20 C -0.07 -0.46 10.07 -39.55 -0.40 -0.86 16 21 C -0.17 -1.07 9.99 -39.90 -0.40 -1.47 16 22 C 0.12 1.09 11.20 -16.82 -0.19 0.90 16 23 N -0.29 -4.08 3.90 -12.34 -0.05 -4.13 16 24 N -0.34 -5.60 12.33 32.38 0.40 -5.20 16 25 H 0.12 2.09 6.28 -51.93 -0.33 1.77 16 26 H 0.10 1.39 6.27 -51.93 -0.33 1.07 16 27 H 0.06 1.10 7.01 -51.93 -0.36 0.74 16 28 H 0.09 1.86 6.82 -51.93 -0.35 1.51 16 29 H 0.04 0.96 7.88 -51.92 -0.41 0.55 16 30 H 0.01 0.11 6.03 -51.93 -0.31 -0.20 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.10 1.75 7.84 -51.93 -0.41 1.35 16 33 H 0.06 0.90 5.92 -51.93 -0.31 0.59 16 34 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.15 0.46 8.06 -52.48 -0.42 0.04 16 36 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -32.97 321.92 -8.14 -41.11 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.01 Total: -1.55 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -4.61 Total: 1.90 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.65 Total: -62.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.97 -8.14 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233073358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.002 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds