Wall clock time and date at job start Tue Mar 31 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47541 * 15.40318 * 3 2 1 5 5 N 1.46895 * 109.47172 * 180.39712 * 4 3 2 6 6 C 1.46895 * 111.00144 * 61.21038 * 5 4 3 7 7 C 1.50701 * 109.47266 * 66.04936 * 6 5 4 8 8 H 1.07995 * 119.99823 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99855 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00237 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00019 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46678 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47130 * 119.99590 * 11 9 7 14 14 H 1.48492 * 109.47277 * 239.99913 * 11 9 7 15 15 C 1.46901 * 110.99936 * 297.25347 * 5 4 3 16 16 C 1.50694 * 109.47169 * 289.28177 * 15 5 4 17 17 N 1.32517 * 125.18146 * 275.35083 * 16 15 5 18 18 C 1.32840 * 109.68202 * 180.02562 * 17 16 15 19 19 C 1.40654 * 132.89002 * 180.02562 * 18 17 16 20 20 C 1.36188 * 119.26597 * 179.97438 * 19 18 17 21 21 C 1.40275 * 119.62244 * 0.02562 * 20 19 18 22 22 C 1.35191 * 120.21327 * 0.02562 * 21 20 19 23 23 N 1.35926 * 120.56667 * 359.97438 * 22 21 20 24 24 N 1.31251 * 125.18245 * 95.39993 * 16 15 5 25 25 H 1.09005 * 109.46855 * 255.40139 * 3 2 1 26 26 H 1.09002 * 109.46973 * 135.40850 * 3 2 1 27 27 H 1.08997 * 109.47138 * 60.39069 * 4 3 2 28 28 H 1.09002 * 109.46858 * 300.39343 * 4 3 2 29 29 H 1.09007 * 109.47073 * 186.04349 * 6 5 4 30 30 H 1.09005 * 109.47282 * 306.04214 * 6 5 4 31 31 H 0.97003 * 120.00121 * 180.02562 * 10 9 7 32 32 H 1.09005 * 109.47140 * 169.27582 * 15 5 4 33 33 H 1.09002 * 109.47149 * 49.28287 * 15 5 4 34 34 H 1.07996 * 120.36877 * 359.97438 * 19 18 17 35 35 H 1.08005 * 120.19069 * 180.29328 * 20 19 18 36 36 H 1.08000 * 119.89677 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.71292 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3897 -0.3831 5 7 4.5876 -1.3916 -0.3739 6 6 5.1060 -1.0778 0.9643 7 6 4.7402 -2.1863 1.9174 8 1 4.1784 -3.0384 1.5645 9 6 5.1218 -2.1120 3.2402 10 7 5.8056 -1.0741 3.6701 11 14 4.6678 -3.4858 4.4219 12 1 3.9030 -4.5309 3.6953 13 1 5.9050 -4.0807 4.9881 14 1 3.8340 -2.9374 5.5215 15 6 5.1215 -0.4606 -1.3770 16 6 4.8716 -1.0116 -2.7571 17 7 5.6495 -1.8821 -3.3841 18 6 5.1410 -2.1560 -4.5804 19 6 5.5580 -2.9966 -5.6281 20 6 4.8072 -3.0697 -6.7620 21 6 3.6341 -2.3077 -6.8671 22 6 3.2509 -1.5049 -5.8492 23 7 3.9940 -1.4257 -4.7138 24 7 3.8506 -0.7019 -3.5216 25 1 2.9711 0.2599 0.9945 26 1 2.9709 0.7327 -0.7215 27 1 2.7612 -1.6460 -1.3804 28 1 2.7499 -2.1227 0.3345 29 1 6.1908 -0.9800 0.9200 30 1 4.6707 -0.1410 1.3122 31 1 6.0744 -1.0220 4.6007 32 1 6.1936 -0.3369 -1.2237 33 1 4.6264 0.5053 -1.2762 34 1 6.4635 -3.5777 -5.5346 35 1 5.1108 -3.7139 -7.5739 36 1 3.0356 -2.3620 -7.7645 37 1 2.3460 -0.9221 -5.9386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233073358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:46 Heat of formation + Delta-G solvation = 137.438556 kcal Electronic energy + Delta-G solvation = -21444.836696 eV Core-core repulsion = 18224.160456 eV Total energy + Delta-G solvation = -3220.676240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.59876 -39.67104 -38.53891 -37.35294 -34.73090 -34.46800 -32.59081 -31.68509 -30.71002 -29.52792 -27.23364 -25.48710 -24.51440 -23.95585 -22.51621 -21.08008 -19.03215 -18.76111 -18.25463 -17.81881 -17.39498 -16.82738 -16.66203 -16.23829 -15.82212 -15.69403 -15.37472 -15.08716 -14.55609 -14.08356 -13.76491 -13.65841 -13.51583 -13.38402 -13.21253 -12.99610 -12.94585 -12.62718 -12.57711 -12.46610 -12.21520 -12.13695 -11.93181 -11.63099 -11.27429 -11.02515 -10.54073 -10.38170 -9.19959 -9.04248 -8.13654 -6.19854 -0.17583 0.02535 1.22790 1.43153 1.46164 1.56532 1.66041 1.69647 1.74549 2.44818 2.51186 2.93800 2.97481 3.13114 3.21119 3.50240 3.84120 3.90099 4.06782 4.10798 4.17478 4.30240 4.40935 4.46688 4.60353 4.70559 4.81512 5.01785 5.08126 5.18233 5.31535 5.32723 5.36219 5.39543 5.52347 5.71886 5.89701 6.08999 6.26077 6.51914 6.57124 6.93681 7.04643 7.48322 8.96577 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.004286 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.936243 B = 6531.576398 C = 7427.404842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.246 3.754 3 C -0.059 4.059 4 C 0.081 3.919 5 N -0.530 5.530 6 C 0.203 3.797 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.014 3.986 10 N -0.926 5.926 11 Si 0.952 3.048 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.138 3.862 16 C 0.271 3.729 17 N -0.573 5.573 18 C 0.253 3.747 19 C -0.128 4.128 20 C -0.039 4.039 21 C -0.137 4.137 22 C 0.084 3.916 23 N -0.297 5.297 24 N -0.364 5.364 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.015 0.985 30 H 0.005 0.995 31 H 0.263 0.737 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.166 0.834 35 H 0.195 0.805 36 H 0.206 0.794 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 -1.103 -23.986 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.071 4.071 3 C -0.100 4.100 4 C -0.049 4.049 5 N -0.253 5.253 6 C 0.078 3.922 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.185 4.185 10 N -0.566 5.566 11 Si 0.778 3.222 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.207 1.207 15 C 0.007 3.993 16 C -0.009 4.009 17 N -0.304 5.304 18 C 0.001 3.999 19 C -0.150 4.150 20 C -0.064 4.064 21 C -0.159 4.159 22 C -0.043 4.043 23 N -0.071 5.071 24 N -0.197 5.197 25 H 0.136 0.864 26 H 0.144 0.856 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.033 0.967 30 H 0.022 0.978 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.183 0.817 35 H 0.212 0.788 36 H 0.223 0.777 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.630 -1.075 -23.425 23.729 hybrid contribution 0.190 0.170 1.279 1.304 sum -3.440 -0.905 -22.146 22.430 Atomic orbital electron populations 1.81131 1.13983 1.10582 1.11208 1.29266 0.95165 0.91498 0.91165 1.20100 0.80891 1.02475 1.06566 1.21878 0.87873 0.94240 1.00890 1.62077 1.06160 1.50127 1.06943 1.19574 0.94613 0.95244 0.82766 1.21410 1.34570 1.06007 0.93534 0.92565 1.25615 0.95260 0.97876 0.99774 1.70032 1.39408 1.30646 1.16529 0.85590 0.77917 0.79728 0.78924 1.19508 1.20687 1.20702 1.20449 1.02185 0.93898 0.82733 1.24331 0.87844 0.91840 0.96930 1.70716 1.32865 1.21411 1.05426 1.22480 0.86517 0.96002 0.94882 1.20724 1.03972 0.99533 0.90743 1.21829 0.91952 0.95957 0.96675 1.21605 0.98799 0.96125 0.99381 1.22318 0.97884 1.01338 0.82748 1.47885 1.18240 1.28403 1.12612 1.78355 1.24907 1.23221 0.93234 0.86442 0.85631 0.91796 0.90917 0.96729 0.97757 0.92776 0.88394 0.90181 0.81678 0.78788 0.77695 0.79573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.45 18.54 20.00 0.37 -18.08 16 2 C 0.25 8.35 15.43 89.44 1.38 9.73 16 3 C -0.06 -1.86 5.06 28.79 0.15 -1.71 16 4 C 0.08 3.01 4.96 86.30 0.43 3.43 16 5 N -0.53 -21.61 4.66 -905.38 -4.22 -25.83 16 6 C 0.20 9.69 4.49 85.56 0.38 10.07 16 7 C -0.52 -27.59 8.50 25.60 0.22 -27.38 16 8 H 0.06 3.05 7.11 -2.91 -0.02 3.03 16 9 C 0.01 0.74 5.46 84.65 0.46 1.20 16 10 N -0.93 -52.61 13.29 21.45 0.28 -52.32 16 11 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 C 0.14 4.85 5.45 85.55 0.47 5.31 16 16 C 0.27 9.74 6.80 138.69 0.94 10.68 16 17 N -0.57 -21.15 11.25 -186.04 -2.09 -23.24 16 18 C 0.25 7.35 7.88 134.10 1.06 8.41 16 19 C -0.13 -2.31 10.11 22.38 0.23 -2.09 16 20 C -0.04 -0.33 10.07 22.29 0.22 -0.10 16 21 C -0.14 -1.04 9.99 22.06 0.22 -0.82 16 22 C 0.08 1.34 11.20 83.36 0.93 2.27 16 23 N -0.30 -8.10 3.90 -192.96 -0.75 -8.85 16 24 N -0.36 -12.07 12.33 -51.47 -0.63 -12.70 16 25 H 0.12 3.98 6.28 -2.38 -0.01 3.96 16 26 H 0.13 3.37 6.27 -2.39 -0.01 3.36 16 27 H 0.06 2.34 7.01 -2.39 -0.02 2.32 16 28 H 0.07 2.97 6.82 -2.39 -0.02 2.95 16 29 H 0.01 0.76 7.88 -2.38 -0.02 0.74 16 30 H 0.00 0.23 6.03 -2.38 -0.01 0.21 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.10 3.50 7.84 -2.38 -0.02 3.48 16 33 H 0.08 2.42 5.92 -2.39 -0.01 2.41 16 34 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.19 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.21 -0.39 8.06 -2.91 -0.02 -0.41 16 37 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -75.12 321.92 3.18 -71.94 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.11 Total: 4.38 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.09 Total: 19.01 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -7.04 Total: -141.03 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -75.12 3.18 -71.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233073358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.381 kcal (2) G-P(sol) polarization free energy of solvation -75.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds