Wall clock time and date at job start Tue Mar 31 2020 06:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99674 * 2 1 4 4 H 1.48502 * 109.46979 * 239.99743 * 3 2 1 5 5 H 1.48500 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47005 * 120.00158 * 3 2 1 7 7 C 1.37878 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99534 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99797 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50278 * 299.91435 * 9 7 2 11 11 C 1.53121 * 109.50734 * 59.99857 * 9 7 2 12 12 C 1.53115 * 109.15852 * 177.59562 * 11 9 7 13 13 C 1.53042 * 109.28014 * 302.34003 * 12 11 9 14 14 N 1.46841 * 109.52172 * 59.18274 * 13 12 11 15 15 C 1.46897 * 110.99969 * 174.16061 * 14 13 12 16 16 C 1.50700 * 109.47036 * 66.04753 * 15 14 13 17 17 C 1.37754 * 120.19730 * 260.02061 * 16 15 14 18 18 C 1.38727 * 120.27326 * 179.97438 * 17 16 15 19 19 C 1.37863 * 120.68918 * 0.02562 * 18 17 16 20 20 C 1.38876 * 119.95948 * 359.96046 * 19 18 17 21 21 O 1.34834 * 133.41986 * 180.02562 * 20 19 18 22 22 C 1.34453 * 110.89635 * 180.02562 * 21 20 19 23 23 C 1.33996 * 110.15849 * 359.74937 * 22 21 20 24 24 C 1.39385 * 120.20030 * 80.00093 * 16 15 14 25 25 C 1.46849 * 111.19957 * 298.25912 * 14 13 12 26 26 H 0.97000 * 120.00149 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52389 * 57.68920 * 11 9 7 28 28 H 1.09005 * 109.56866 * 297.52696 * 11 9 7 29 29 H 1.09006 * 109.50259 * 182.40380 * 12 11 9 30 30 H 1.08999 * 109.50713 * 62.28754 * 12 11 9 31 31 H 1.09001 * 109.46159 * 299.16580 * 13 12 11 32 32 H 1.08994 * 109.46179 * 179.19684 * 13 12 11 33 33 H 1.08997 * 109.47181 * 306.04513 * 15 14 13 34 34 H 1.09000 * 109.46926 * 186.04412 * 15 14 13 35 35 H 1.08000 * 119.86549 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.65044 * 180.02562 * 18 17 16 37 37 H 1.08001 * 120.01802 * 180.02562 * 19 18 17 38 38 H 1.07996 * 124.91825 * 180.02562 * 22 21 20 39 39 H 1.07999 * 126.90614 * 180.27589 * 23 22 21 40 40 H 1.08999 * 109.46647 * 181.75701 * 25 14 13 41 41 H 1.09003 * 109.46361 * 301.72625 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6250 -2.5578 0.8909 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3447 -3.9348 -1.2723 13 6 0.6954 -5.0569 -1.2399 14 7 1.5113 -4.9348 -0.0251 15 6 2.4287 -6.0741 0.1096 16 6 3.4404 -6.0391 -1.0067 17 6 3.2814 -6.8464 -2.1115 18 6 4.2115 -6.8150 -3.1404 19 6 5.3059 -5.9794 -3.0742 20 6 5.4850 -5.1571 -1.9695 21 8 6.4289 -4.2571 -1.6272 22 6 6.1557 -3.7070 -0.4312 23 6 5.0189 -4.2163 0.0625 24 6 4.5425 -5.1893 -0.9278 25 6 2.2450 -3.6629 -0.0039 26 1 -0.4850 0.8400 -0.0004 27 1 0.9923 -2.4829 -2.1398 28 1 -0.3671 -1.7794 -1.2301 29 1 -0.9399 -4.0166 -2.1819 30 1 -0.9959 -4.0168 -0.4021 31 1 1.3374 -4.9826 -2.1176 32 1 0.1887 -6.0219 -1.2415 33 1 1.8629 -7.0043 0.0582 34 1 2.9436 -6.0145 1.0685 35 1 2.4291 -7.5065 -2.1770 36 1 4.0766 -7.4520 -4.0021 37 1 6.0231 -5.9634 -3.8816 38 1 6.7621 -2.9594 0.0583 39 1 4.5486 -3.9628 1.0011 40 1 2.8637 -3.6154 0.8922 41 1 2.8798 -3.5950 -0.8874 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236736248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:50 Heat of formation + Delta-G solvation = 30.211198 kcal Electronic energy + Delta-G solvation = -23204.594765 eV Core-core repulsion = 20050.516390 eV Total energy + Delta-G solvation = -3154.078375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.27682 -38.94662 -37.18670 -34.05736 -32.74333 -31.69491 -30.20869 -29.64606 -29.11932 -25.78688 -24.93117 -22.90416 -22.32850 -22.16839 -21.08134 -20.10063 -18.30278 -17.17256 -17.07479 -16.33816 -15.85774 -15.57481 -14.93682 -14.53658 -14.27920 -14.05857 -13.70137 -13.51053 -12.93369 -12.63988 -12.51468 -12.35897 -12.17612 -11.86582 -11.76149 -11.49132 -11.14504 -10.94136 -10.91612 -10.64634 -10.61107 -10.07265 -9.92845 -9.69744 -9.41226 -9.01439 -8.66105 -8.44765 -8.27974 -8.02603 -7.57990 -5.94722 -4.00502 1.04221 1.49384 2.60513 2.98532 3.32422 3.37428 3.39406 3.80256 4.42632 4.57440 4.73414 4.83286 4.95583 5.18477 5.29069 5.35171 5.44489 5.53837 5.57464 5.76204 5.81250 5.83962 6.00546 6.05546 6.13383 6.30796 6.32585 6.39827 6.50807 6.52530 6.62827 6.65859 6.76283 6.77904 6.82574 7.03029 7.25611 7.33618 7.43120 7.68567 7.77331 7.84004 8.11707 8.20868 8.51905 9.03222 9.63301 11.11314 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.006447 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.633589 B = 4342.363668 C = 5454.437624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.525 5.525 15 C 0.090 3.910 16 C -0.063 4.063 17 C -0.134 4.134 18 C -0.096 4.096 19 C -0.115 4.115 20 C 0.049 3.951 21 O -0.201 6.201 22 C -0.003 4.003 23 C -0.193 4.193 24 C -0.113 4.113 25 C 0.063 3.937 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.206 0.794 39 H 0.163 0.837 40 H 0.059 0.941 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.771 -12.925 -3.148 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.036 3.964 10 H 0.050 0.950 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.068 4.068 14 N -0.247 5.247 15 C -0.038 4.038 16 C -0.065 4.065 17 C -0.153 4.153 18 C -0.114 4.114 19 C -0.134 4.134 20 C 0.001 3.999 21 O -0.103 6.103 22 C -0.067 4.067 23 C -0.212 4.212 24 C -0.114 4.114 25 C -0.064 4.064 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.223 0.777 39 H 0.181 0.819 40 H 0.077 0.923 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 7.485 -12.726 -2.886 15.043 hybrid contribution 0.947 1.101 -0.691 1.608 sum 8.432 -11.625 -3.576 14.800 Atomic orbital electron populations 1.69880 1.05812 1.26341 1.50737 1.24921 0.94796 0.98830 0.95234 0.86733 0.79680 0.83509 0.78505 1.20448 1.21310 1.20306 1.21088 0.92706 0.90653 1.50561 0.92992 1.18680 0.92635 0.90474 0.94657 0.95009 1.21641 0.99987 0.94692 0.98501 1.21680 0.97189 0.96566 1.00114 1.22050 0.95467 0.98527 0.90716 1.62468 1.22267 1.02425 1.37544 1.21287 0.91384 0.95678 0.95451 1.20254 0.94221 0.94281 0.97747 1.20898 0.99860 1.00585 0.93925 1.20829 0.93484 0.98317 0.98799 1.19810 1.00162 0.97435 0.95974 1.19629 0.89490 0.93732 0.97002 1.83981 1.44830 1.46974 1.34466 1.23917 0.98647 0.99648 0.84504 1.22772 0.96860 0.99564 1.01956 1.19778 0.96441 0.99670 0.95527 1.22627 0.96505 0.88129 0.99094 0.93052 0.95376 0.89172 0.93619 0.92138 0.95468 0.92558 0.90479 0.90179 0.85714 0.85184 0.85573 0.77734 0.81932 0.92274 0.95091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 11.35 55.43 0.63 -24.90 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 13 C 0.06 1.08 5.00 -3.83 -0.02 1.06 16 14 N -0.53 -9.74 4.86 -236.11 -1.15 -10.88 16 15 C 0.09 1.37 5.52 -4.98 -0.03 1.35 16 16 C -0.06 -0.97 4.09 -104.37 -0.43 -1.39 16 17 C -0.13 -1.79 8.90 -39.58 -0.35 -2.14 16 18 C -0.10 -1.18 10.01 -39.54 -0.40 -1.58 16 19 C -0.12 -1.56 10.06 -39.48 -0.40 -1.96 16 20 C 0.05 0.78 7.41 -38.49 -0.29 0.50 16 21 O -0.20 -3.16 10.58 3.83 0.04 -3.12 16 22 C 0.00 -0.04 11.96 29.24 0.35 0.31 16 23 C -0.19 -3.03 8.83 -37.62 -0.33 -3.37 16 24 C -0.11 -1.86 4.66 -105.16 -0.49 -2.35 16 25 C 0.06 1.34 2.91 -3.83 -0.01 1.33 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.03 0.51 7.01 -51.93 -0.36 0.15 16 32 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.12 1.40 8.04 -52.49 -0.42 0.98 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.21 2.07 8.06 -52.49 -0.42 1.65 16 39 H 0.16 2.49 6.17 -52.49 -0.32 2.16 16 40 H 0.06 1.22 5.81 -51.93 -0.30 0.92 16 41 H 0.03 0.70 5.63 -51.93 -0.29 0.41 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -30.32 319.97 -9.73 -40.05 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.78 Total: 2.77 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.28 Total: -25.08 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.52 Total: -35.78 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.32 -9.73 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236736248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.261 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds