Wall clock time and date at job start Tue Mar 31 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99674 * 2 1 4 4 H 1.48502 * 109.46979 * 239.99743 * 3 2 1 5 5 H 1.48500 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47005 * 120.00158 * 3 2 1 7 7 C 1.37878 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99534 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99797 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50278 * 299.91435 * 9 7 2 11 11 C 1.53121 * 109.50734 * 59.99857 * 9 7 2 12 12 C 1.53115 * 109.15852 * 177.59562 * 11 9 7 13 13 C 1.53042 * 109.28014 * 302.34003 * 12 11 9 14 14 N 1.46841 * 109.52172 * 59.18274 * 13 12 11 15 15 C 1.46897 * 110.99969 * 174.16061 * 14 13 12 16 16 C 1.50700 * 109.47036 * 66.04753 * 15 14 13 17 17 C 1.37754 * 120.19730 * 260.02061 * 16 15 14 18 18 C 1.38727 * 120.27326 * 179.97438 * 17 16 15 19 19 C 1.37863 * 120.68918 * 0.02562 * 18 17 16 20 20 C 1.38876 * 119.95948 * 359.96046 * 19 18 17 21 21 O 1.34834 * 133.41986 * 180.02562 * 20 19 18 22 22 C 1.34453 * 110.89635 * 180.02562 * 21 20 19 23 23 C 1.33996 * 110.15849 * 359.74937 * 22 21 20 24 24 C 1.39385 * 120.20030 * 80.00093 * 16 15 14 25 25 C 1.46849 * 111.19957 * 298.25912 * 14 13 12 26 26 H 0.97000 * 120.00149 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52389 * 57.68920 * 11 9 7 28 28 H 1.09005 * 109.56866 * 297.52696 * 11 9 7 29 29 H 1.09006 * 109.50259 * 182.40380 * 12 11 9 30 30 H 1.08999 * 109.50713 * 62.28754 * 12 11 9 31 31 H 1.09001 * 109.46159 * 299.16580 * 13 12 11 32 32 H 1.08994 * 109.46179 * 179.19684 * 13 12 11 33 33 H 1.08997 * 109.47181 * 306.04513 * 15 14 13 34 34 H 1.09000 * 109.46926 * 186.04412 * 15 14 13 35 35 H 1.08000 * 119.86549 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.65044 * 180.02562 * 18 17 16 37 37 H 1.08001 * 120.01802 * 180.02562 * 19 18 17 38 38 H 1.07996 * 124.91825 * 180.02562 * 22 21 20 39 39 H 1.07999 * 126.90614 * 180.27589 * 23 22 21 40 40 H 1.08999 * 109.46647 * 181.75701 * 25 14 13 41 41 H 1.09003 * 109.46361 * 301.72625 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6250 -2.5578 0.8909 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3447 -3.9348 -1.2723 13 6 0.6954 -5.0569 -1.2399 14 7 1.5113 -4.9348 -0.0251 15 6 2.4287 -6.0741 0.1096 16 6 3.4404 -6.0391 -1.0067 17 6 3.2814 -6.8464 -2.1115 18 6 4.2115 -6.8150 -3.1404 19 6 5.3059 -5.9794 -3.0742 20 6 5.4850 -5.1571 -1.9695 21 8 6.4289 -4.2571 -1.6272 22 6 6.1557 -3.7070 -0.4312 23 6 5.0189 -4.2163 0.0625 24 6 4.5425 -5.1893 -0.9278 25 6 2.2450 -3.6629 -0.0039 26 1 -0.4850 0.8400 -0.0004 27 1 0.9923 -2.4829 -2.1398 28 1 -0.3671 -1.7794 -1.2301 29 1 -0.9399 -4.0166 -2.1819 30 1 -0.9959 -4.0168 -0.4021 31 1 1.3374 -4.9826 -2.1176 32 1 0.1887 -6.0219 -1.2415 33 1 1.8629 -7.0043 0.0582 34 1 2.9436 -6.0145 1.0685 35 1 2.4291 -7.5065 -2.1770 36 1 4.0766 -7.4520 -4.0021 37 1 6.0231 -5.9634 -3.8816 38 1 6.7621 -2.9594 0.0583 39 1 4.5486 -3.9628 1.0011 40 1 2.8637 -3.6154 0.8922 41 1 2.8798 -3.5950 -0.8874 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236736248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:49 Heat of formation + Delta-G solvation = 12.648109 kcal Electronic energy + Delta-G solvation = -23205.356357 eV Core-core repulsion = 20050.516390 eV Total energy + Delta-G solvation = -3154.839967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.39003 -40.32609 -38.47909 -35.74529 -34.22974 -33.19063 -31.70181 -31.18069 -30.24421 -27.12056 -26.91440 -24.17528 -23.67310 -23.46893 -22.62001 -21.45814 -19.96461 -18.55872 -18.17763 -18.08219 -17.08108 -16.73663 -16.59394 -16.06169 -15.81197 -15.39284 -15.01765 -14.93567 -14.38470 -14.32358 -13.93007 -13.87627 -13.53449 -13.16605 -13.03003 -12.85293 -12.81107 -12.68665 -12.50593 -12.18555 -12.05321 -11.76152 -11.73167 -11.39897 -10.95168 -10.85289 -10.61370 -10.37435 -9.54351 -9.24979 -8.93602 -8.07698 -6.21208 -0.02081 0.41717 1.39023 1.40369 1.47726 1.48797 1.92699 2.41666 2.72031 3.19009 3.22668 3.60041 3.75703 3.93395 4.17377 4.20468 4.22836 4.31212 4.36468 4.43986 4.50095 4.63474 4.68952 4.71680 4.83708 4.86451 4.93444 5.01261 5.02836 5.13248 5.21504 5.27052 5.36704 5.39615 5.48162 5.51959 5.59860 5.63275 5.75504 5.97096 6.12474 6.21229 6.23321 6.35570 6.47669 6.91017 7.46040 8.96920 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.006447 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.633589 B = 4342.363668 C = 5454.437624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.051 3.949 10 H -0.005 1.005 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.535 5.535 15 C 0.094 3.906 16 C -0.085 4.085 17 C -0.130 4.130 18 C -0.092 4.092 19 C -0.120 4.120 20 C 0.018 3.982 21 O -0.211 6.211 22 C 0.002 3.998 23 C -0.222 4.222 24 C -0.136 4.136 25 C 0.088 3.912 26 H 0.260 0.740 27 H 0.012 0.988 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.240 0.760 39 H 0.157 0.843 40 H 0.057 0.943 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 -14.626 -4.322 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.067 0.933 9 C 0.032 3.968 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.061 4.061 14 N -0.257 5.257 15 C -0.033 4.033 16 C -0.087 4.087 17 C -0.148 4.148 18 C -0.109 4.109 19 C -0.139 4.139 20 C -0.029 4.029 21 O -0.113 6.113 22 C -0.062 4.062 23 C -0.241 4.241 24 C -0.137 4.137 25 C -0.039 4.039 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.186 0.814 37 H 0.166 0.834 38 H 0.256 0.744 39 H 0.175 0.825 40 H 0.075 0.925 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.078 -14.448 -4.057 17.043 hybrid contribution 0.766 1.585 -0.342 1.794 sum 8.844 -12.862 -4.399 16.218 Atomic orbital electron populations 1.70027 1.07135 1.27031 1.51361 1.25693 0.95625 1.02174 0.94909 0.85746 0.78538 0.79413 0.78789 1.20076 1.20881 1.19285 1.21452 0.92834 0.92136 1.50536 0.93250 1.18623 0.93043 0.91688 0.93399 0.98701 1.21443 0.98990 0.96498 0.97188 1.21606 0.97630 0.94849 1.00927 1.22025 0.94704 0.99160 0.90184 1.62382 1.23074 1.02202 1.38076 1.21319 0.91247 0.95151 0.95629 1.20340 0.94288 0.95380 0.98689 1.21299 1.00626 0.99835 0.93066 1.21308 0.92253 0.97806 0.99550 1.20278 1.01079 0.96770 0.95739 1.20120 0.89856 0.94813 0.98095 1.83966 1.45134 1.47232 1.34975 1.24562 0.98448 0.99305 0.83852 1.22865 0.98045 1.00855 1.02298 1.20075 0.97371 1.00314 0.95982 1.22162 0.94990 0.88396 0.98353 0.93116 0.96911 0.92453 0.91365 0.92839 0.95965 0.88776 0.87529 0.90412 0.83002 0.81368 0.83377 0.74418 0.82520 0.92501 0.96445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.23 11.35 21.45 0.24 -53.99 16 2 C 0.01 0.83 5.30 84.65 0.45 1.28 16 3 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -30.09 8.56 25.60 0.22 -29.87 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.68 2.26 -11.49 -0.03 2.66 16 10 H -0.01 -0.31 8.14 -2.39 -0.02 -0.32 16 11 C -0.10 -5.14 5.02 30.67 0.15 -4.98 16 12 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 13 C 0.07 2.25 5.00 86.33 0.43 2.68 16 14 N -0.54 -19.32 4.86 -900.93 -4.38 -23.70 16 15 C 0.09 2.69 5.52 85.56 0.47 3.16 16 16 C -0.08 -2.47 4.09 -19.70 -0.08 -2.55 16 17 C -0.13 -3.02 8.90 22.27 0.20 -2.83 16 18 C -0.09 -1.92 10.01 22.30 0.22 -1.70 16 19 C -0.12 -3.00 10.06 22.33 0.22 -2.77 16 20 C 0.02 0.56 7.41 22.98 0.17 0.73 16 21 O -0.21 -6.60 10.58 -9.23 -0.10 -6.70 16 22 C 0.00 0.06 11.96 66.85 0.80 0.86 16 23 C -0.22 -7.12 8.83 23.54 0.21 -6.92 16 24 C -0.14 -4.45 4.66 -20.21 -0.09 -4.55 16 25 C 0.09 3.82 2.91 86.33 0.25 4.07 16 26 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 3.22 6.15 -2.38 -0.01 3.20 16 29 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.02 0.78 7.01 -2.39 -0.02 0.76 16 32 H 0.09 2.51 8.06 -2.39 -0.02 2.49 16 33 H 0.11 2.41 7.93 -2.39 -0.02 2.39 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.15 2.66 8.04 -2.91 -0.02 2.64 16 36 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 38 H 0.24 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.16 5.03 6.17 -2.91 -0.02 5.01 16 40 H 0.06 2.44 5.81 -2.39 -0.01 2.43 16 41 H 0.02 0.81 5.63 -2.39 -0.01 0.79 16 Total: -1.00 -68.11 319.97 2.60 -65.51 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.02 Total: 17.36 kcal Atomic # 6 Polarization: -48.74 SS G_CDS: 3.79 Total: -44.96 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -4.13 Total: -77.68 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.10 Total: -6.70 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.11 2.60 -65.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236736248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.158 kcal (2) G-P(sol) polarization free energy of solvation -68.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds