Wall clock time and date at job start Tue Mar 31 2020 06:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99947 * 2 1 4 4 H 1.48495 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46965 * 299.99850 * 3 2 1 6 6 H 1.48507 * 109.47599 * 59.99442 * 3 2 1 7 7 C 1.37879 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99433 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99725 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50581 * 60.07674 * 9 7 2 11 11 C 1.53117 * 109.50470 * 299.99497 * 9 7 2 12 12 C 1.53125 * 109.16218 * 182.36772 * 11 9 7 13 13 C 1.53041 * 109.27327 * 57.65600 * 12 11 9 14 14 N 1.46846 * 109.52485 * 300.81903 * 13 12 11 15 15 C 1.46903 * 111.00068 * 185.84433 * 14 13 12 16 16 C 1.50700 * 109.46954 * 66.04875 * 15 14 13 17 17 C 1.37762 * 120.19655 * 259.99988 * 16 15 14 18 18 C 1.38721 * 120.27572 * 180.02562 * 17 16 15 19 19 C 1.37858 * 120.69273 * 359.94987 * 18 17 16 20 20 C 1.38879 * 119.95503 * 0.02569 * 19 18 17 21 21 O 1.34840 * 133.42011 * 179.97438 * 20 19 18 22 22 C 1.34443 * 110.89865 * 180.02562 * 21 20 19 23 23 C 1.33999 * 110.16062 * 359.97438 * 22 21 20 24 24 C 1.39385 * 120.20402 * 80.26109 * 16 15 14 25 25 C 1.46845 * 111.19910 * 61.74365 * 14 13 12 26 26 H 0.97001 * 119.99878 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.52385 * 62.46381 * 11 9 7 28 28 H 1.08996 * 109.57687 * 302.30520 * 11 9 7 29 29 H 1.08998 * 109.50033 * 297.71844 * 12 11 9 30 30 H 1.08992 * 109.50451 * 177.59427 * 12 11 9 31 31 H 1.09004 * 109.45990 * 180.80597 * 13 12 11 32 32 H 1.08992 * 109.46868 * 60.83983 * 13 12 11 33 33 H 1.08998 * 109.47051 * 306.04828 * 15 14 13 34 34 H 1.08998 * 109.46822 * 186.04270 * 15 14 13 35 35 H 1.08002 * 119.86448 * 359.97191 * 17 16 15 36 36 H 1.08004 * 119.65369 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.02445 * 180.02562 * 19 18 17 38 38 H 1.07996 * 124.92423 * 180.02562 * 22 21 20 39 39 H 1.08002 * 126.90480 * 179.97438 * 23 22 21 40 40 H 1.09006 * 109.45568 * 58.27670 * 25 14 13 41 41 H 1.09003 * 109.46425 * 178.24091 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6256 -2.5582 -0.8901 11 6 0.3701 -2.5807 1.2502 12 6 -0.3464 -3.9338 1.2725 13 6 0.6932 -5.0565 1.2407 14 7 1.5099 -4.9348 0.0264 15 6 2.4268 -6.0747 -0.1078 16 6 1.6319 -7.3347 -0.3351 17 6 1.3912 -8.2001 0.7094 18 6 0.6602 -9.3606 0.5019 19 6 0.1636 -9.6655 -0.7474 20 6 0.3943 -8.8064 -1.8140 21 8 0.0476 -8.8325 -3.1168 22 6 0.5177 -7.7494 -3.7599 23 6 1.1928 -6.9642 -2.9094 24 6 1.1403 -7.6343 -1.6045 25 6 2.2443 -3.6634 0.0055 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3674 -1.7784 1.2291 28 1 0.9901 -2.4822 2.1412 29 1 -0.9970 -4.0155 0.4018 30 1 -0.9421 -4.0152 2.1816 31 1 0.1859 -6.0213 1.2421 32 1 1.3347 -4.9825 2.1187 33 1 3.0160 -6.1763 0.8036 34 1 3.0927 -5.9076 -0.9544 35 1 1.7741 -7.9745 1.6938 36 1 0.4779 -10.0322 1.3279 37 1 -0.4046 -10.5718 -0.8967 38 1 0.3716 -7.5418 -4.8096 39 1 1.6817 -6.0290 -3.1392 40 1 2.8786 -3.5960 0.8894 41 1 2.8636 -3.6163 -0.8902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236736253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:52 Heat of formation + Delta-G solvation = 24.460910 kcal Electronic energy + Delta-G solvation = -22374.418296 eV Core-core repulsion = 19220.090570 eV Total energy + Delta-G solvation = -3154.327726 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30466 -38.74992 -37.39485 -34.06977 -32.72118 -31.76907 -30.40327 -29.66030 -29.24699 -25.77661 -24.91540 -22.91498 -22.32673 -21.91737 -21.31474 -20.10294 -18.57290 -17.23084 -16.97883 -16.35887 -15.97710 -15.61444 -15.05545 -14.60124 -14.37027 -14.11516 -13.51520 -13.30257 -13.07464 -12.78788 -12.55103 -12.47987 -12.17313 -12.00332 -11.84262 -11.67700 -11.16590 -10.96328 -10.89092 -10.66356 -10.56561 -10.09108 -9.99472 -9.82155 -9.45869 -9.03436 -8.68325 -8.53100 -8.29399 -8.06063 -7.62794 -5.96531 -4.02854 0.97159 1.41918 2.51083 2.88248 3.30036 3.38234 3.41665 3.71529 4.42044 4.55946 4.65963 4.72546 4.96844 5.12323 5.24384 5.33561 5.38806 5.45774 5.56047 5.70216 5.77172 5.84576 5.88726 6.02017 6.11450 6.24189 6.29323 6.33707 6.40469 6.49029 6.53162 6.64823 6.69509 6.75598 6.77679 6.98367 7.23693 7.24989 7.41626 7.68354 7.76244 7.82733 8.09840 8.19333 8.49210 9.01580 9.61506 11.09350 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025569 B = 0.004043 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.820743 B = 6923.477309 C = 7375.283514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.529 5.529 15 C 0.090 3.910 16 C -0.014 4.014 17 C -0.139 4.139 18 C -0.093 4.093 19 C -0.117 4.117 20 C 0.048 3.952 21 O -0.201 6.201 22 C -0.010 4.010 23 C -0.185 4.185 24 C -0.109 4.109 25 C 0.068 3.932 26 H 0.259 0.741 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.205 0.795 39 H 0.160 0.840 40 H 0.019 0.981 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 -17.574 -1.627 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.253 5.253 15 C -0.037 4.037 16 C -0.015 4.015 17 C -0.158 4.158 18 C -0.111 4.111 19 C -0.136 4.136 20 C 0.000 4.000 21 O -0.103 6.103 22 C -0.074 4.074 23 C -0.204 4.204 24 C -0.110 4.110 25 C -0.059 4.059 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.222 0.778 39 H 0.177 0.823 40 H 0.037 0.963 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.695 -17.642 -2.142 17.786 hybrid contribution 1.033 1.150 0.706 1.699 sum 1.728 -16.493 -1.437 16.645 Atomic orbital electron populations 1.69908 1.05840 1.26179 1.50748 1.24933 0.94807 0.98929 0.95152 0.86585 0.80127 0.84010 0.77538 1.19867 1.21056 1.21106 1.21186 0.92841 0.90669 1.50589 0.92812 1.18654 0.92580 0.90187 0.94876 0.94806 1.21650 1.00021 0.94742 0.98415 1.21663 0.97206 0.96447 1.00113 1.22062 0.95639 0.98998 0.89887 1.62019 1.23507 1.01500 1.38322 1.21017 0.93420 0.88580 1.00730 1.19337 0.96228 0.95162 0.90788 1.20938 1.01276 0.94981 0.98594 1.20820 0.97478 0.97138 0.95655 1.19803 1.04401 0.99567 0.89800 1.19643 0.99446 0.97335 0.83541 1.83978 1.65121 1.41923 1.19289 1.23897 0.98968 0.86103 0.98419 1.22584 1.04944 1.01769 0.91088 1.19712 1.01584 0.95207 0.94544 1.22334 0.96445 0.88343 0.98732 0.93132 0.89145 0.95212 0.92216 0.93625 0.92185 0.96015 0.94484 0.90173 0.85705 0.85082 0.85530 0.77808 0.82276 0.96275 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 11.35 55.43 0.63 -24.74 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.04 8.57 -34.44 -0.30 -14.33 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C 0.06 1.12 5.26 -3.83 -0.02 1.10 16 14 N -0.53 -9.83 4.65 -236.11 -1.10 -10.93 16 15 C 0.09 1.40 5.03 -4.97 -0.03 1.37 16 16 C -0.01 -0.21 4.61 -104.37 -0.48 -0.69 16 17 C -0.14 -1.75 8.57 -39.58 -0.34 -2.09 16 18 C -0.09 -1.03 10.01 -39.54 -0.40 -1.42 16 19 C -0.12 -1.40 10.06 -39.48 -0.40 -1.80 16 20 C 0.05 0.68 7.41 -38.49 -0.29 0.39 16 21 O -0.20 -2.75 10.58 3.84 0.04 -2.71 16 22 C -0.01 -0.11 11.96 29.24 0.35 0.24 16 23 C -0.18 -2.56 11.02 -37.62 -0.41 -2.97 16 24 C -0.11 -1.65 6.17 -105.16 -0.65 -2.30 16 25 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.01 6.32 -51.93 -0.33 0.68 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.04 0.54 7.99 -51.93 -0.41 0.13 16 34 H 0.08 1.20 7.98 -51.93 -0.41 0.79 16 35 H 0.13 1.38 8.04 -52.49 -0.42 0.96 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.21 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 1.21 8.01 -51.93 -0.42 0.80 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -29.97 331.08 -10.11 -40.08 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.08 Total: 0.66 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -3.57 Total: -23.54 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.47 Total: -35.67 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.97 -10.11 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236736253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.546 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds