Wall clock time and date at job start Tue Mar 31 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99947 * 2 1 4 4 H 1.48495 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46965 * 299.99850 * 3 2 1 6 6 H 1.48507 * 109.47599 * 59.99442 * 3 2 1 7 7 C 1.37879 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99433 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99725 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.50581 * 60.07674 * 9 7 2 11 11 C 1.53117 * 109.50470 * 299.99497 * 9 7 2 12 12 C 1.53125 * 109.16218 * 182.36772 * 11 9 7 13 13 C 1.53041 * 109.27327 * 57.65600 * 12 11 9 14 14 N 1.46846 * 109.52485 * 300.81903 * 13 12 11 15 15 C 1.46903 * 111.00068 * 185.84433 * 14 13 12 16 16 C 1.50700 * 109.46954 * 66.04875 * 15 14 13 17 17 C 1.37762 * 120.19655 * 259.99988 * 16 15 14 18 18 C 1.38721 * 120.27572 * 180.02562 * 17 16 15 19 19 C 1.37858 * 120.69273 * 359.94987 * 18 17 16 20 20 C 1.38879 * 119.95503 * 0.02569 * 19 18 17 21 21 O 1.34840 * 133.42011 * 179.97438 * 20 19 18 22 22 C 1.34443 * 110.89865 * 180.02562 * 21 20 19 23 23 C 1.33999 * 110.16062 * 359.97438 * 22 21 20 24 24 C 1.39385 * 120.20402 * 80.26109 * 16 15 14 25 25 C 1.46845 * 111.19910 * 61.74365 * 14 13 12 26 26 H 0.97001 * 119.99878 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.52385 * 62.46381 * 11 9 7 28 28 H 1.08996 * 109.57687 * 302.30520 * 11 9 7 29 29 H 1.08998 * 109.50033 * 297.71844 * 12 11 9 30 30 H 1.08992 * 109.50451 * 177.59427 * 12 11 9 31 31 H 1.09004 * 109.45990 * 180.80597 * 13 12 11 32 32 H 1.08992 * 109.46868 * 60.83983 * 13 12 11 33 33 H 1.08998 * 109.47051 * 306.04828 * 15 14 13 34 34 H 1.08998 * 109.46822 * 186.04270 * 15 14 13 35 35 H 1.08002 * 119.86448 * 359.97191 * 17 16 15 36 36 H 1.08004 * 119.65369 * 179.97438 * 18 17 16 37 37 H 1.08001 * 120.02445 * 180.02562 * 19 18 17 38 38 H 1.07996 * 124.92423 * 180.02562 * 22 21 20 39 39 H 1.08002 * 126.90480 * 179.97438 * 23 22 21 40 40 H 1.09006 * 109.45568 * 58.27670 * 25 14 13 41 41 H 1.09003 * 109.46425 * 178.24091 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6256 -2.5582 -0.8901 11 6 0.3701 -2.5807 1.2502 12 6 -0.3464 -3.9338 1.2725 13 6 0.6932 -5.0565 1.2407 14 7 1.5099 -4.9348 0.0264 15 6 2.4268 -6.0747 -0.1078 16 6 1.6319 -7.3347 -0.3351 17 6 1.3912 -8.2001 0.7094 18 6 0.6602 -9.3606 0.5019 19 6 0.1636 -9.6655 -0.7474 20 6 0.3943 -8.8064 -1.8140 21 8 0.0476 -8.8325 -3.1168 22 6 0.5177 -7.7494 -3.7599 23 6 1.1928 -6.9642 -2.9094 24 6 1.1403 -7.6343 -1.6045 25 6 2.2443 -3.6634 0.0055 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3674 -1.7784 1.2291 28 1 0.9901 -2.4822 2.1412 29 1 -0.9970 -4.0155 0.4018 30 1 -0.9421 -4.0152 2.1816 31 1 0.1859 -6.0213 1.2421 32 1 1.3347 -4.9825 2.1187 33 1 3.0160 -6.1763 0.8036 34 1 3.0927 -5.9076 -0.9544 35 1 1.7741 -7.9745 1.6938 36 1 0.4779 -10.0322 1.3279 37 1 -0.4046 -10.5718 -0.8967 38 1 0.3716 -7.5418 -4.8096 39 1 1.6817 -6.0290 -3.1392 40 1 2.8786 -3.5960 0.8894 41 1 2.8636 -3.6163 -0.8902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236736253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:51 Heat of formation + Delta-G solvation = 8.045433 kcal Electronic energy + Delta-G solvation = -22375.130125 eV Core-core repulsion = 19220.090570 eV Total energy + Delta-G solvation = -3155.039554 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.28016 -40.12350 -38.62808 -35.72926 -34.12977 -33.18918 -31.85801 -31.19443 -30.26533 -27.04893 -26.91096 -24.08458 -23.45858 -23.39735 -22.78499 -21.22595 -20.35235 -18.47041 -18.13866 -17.93586 -17.03396 -16.75090 -16.52463 -16.30167 -15.77191 -15.41283 -14.98986 -14.67056 -14.43823 -14.33192 -14.02309 -13.70684 -13.51755 -13.35621 -13.09161 -12.87554 -12.85649 -12.62225 -12.50462 -12.37736 -11.87481 -11.80325 -11.70456 -11.38428 -11.03856 -10.83871 -10.66197 -10.38271 -9.51386 -9.16756 -8.96720 -8.07717 -6.22167 0.01427 0.43939 1.40362 1.42140 1.53373 1.54081 1.96651 2.42703 2.69292 3.19334 3.26504 3.57395 3.80902 3.99493 4.16794 4.20817 4.23221 4.26010 4.40287 4.41920 4.53378 4.61007 4.62631 4.69662 4.76085 4.83738 4.88682 4.97255 5.03163 5.09323 5.17354 5.30968 5.37346 5.41587 5.50130 5.54055 5.63432 5.65551 5.76626 5.96117 6.12132 6.20936 6.27058 6.33674 6.46086 6.90933 7.46002 8.97116 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025569 B = 0.004043 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.820743 B = 6923.477309 C = 7375.283514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.055 3.945 10 H -0.007 1.007 11 C -0.102 4.102 12 C -0.110 4.110 13 C 0.069 3.931 14 N -0.540 5.540 15 C 0.096 3.904 16 C -0.040 4.040 17 C -0.136 4.136 18 C -0.088 4.088 19 C -0.115 4.115 20 C 0.022 3.978 21 O -0.209 6.209 22 C 0.007 3.993 23 C -0.221 4.221 24 C -0.132 4.132 25 C 0.083 3.917 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.169 0.831 37 H 0.152 0.848 38 H 0.245 0.755 39 H 0.153 0.847 40 H 0.018 0.982 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -19.385 -0.852 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.012 0.988 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.058 4.058 14 N -0.264 5.264 15 C -0.031 4.031 16 C -0.041 4.041 17 C -0.155 4.155 18 C -0.106 4.106 19 C -0.134 4.134 20 C -0.025 4.025 21 O -0.111 6.111 22 C -0.057 4.057 23 C -0.240 4.240 24 C -0.134 4.134 25 C -0.044 4.044 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.170 0.830 38 H 0.261 0.739 39 H 0.171 0.829 40 H 0.037 0.963 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.030 -19.473 -1.364 19.548 hybrid contribution 0.896 1.652 0.428 1.928 sum 1.926 -17.821 -0.936 17.949 Atomic orbital electron populations 1.70055 1.07239 1.26973 1.51326 1.25722 0.95619 1.02339 0.94768 0.85562 0.79110 0.79737 0.77568 1.19076 1.20693 1.20623 1.21548 0.93015 0.92088 1.50664 0.92929 1.18561 0.92925 0.91324 0.93602 0.98832 1.21452 0.99110 0.96006 0.97501 1.21571 0.97546 0.95123 1.00510 1.21995 0.95123 0.98750 0.89953 1.61910 1.24233 1.01387 1.38865 1.20972 0.93098 0.87849 1.01156 1.19328 0.97787 0.95458 0.91509 1.21240 1.00646 0.94942 0.98683 1.21247 0.96078 0.96924 0.96348 1.20265 1.03800 0.99876 0.89447 1.20062 1.00290 0.97910 0.84213 1.83978 1.65254 1.42465 1.19361 1.24608 0.96752 0.84681 0.99616 1.22706 1.07008 1.02529 0.91761 1.20012 1.02218 0.96013 0.95123 1.21989 0.95300 0.88555 0.98598 0.93109 0.92465 0.95648 0.93856 0.91310 0.90221 0.95124 0.93193 0.90507 0.83963 0.81389 0.83011 0.73918 0.82902 0.96337 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.89 11.35 21.45 0.24 -53.65 16 2 C 0.01 0.79 5.30 84.65 0.45 1.24 16 3 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.53 -29.92 8.57 25.60 0.22 -29.70 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.05 2.83 2.26 -11.49 -0.03 2.81 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 11 C -0.10 -5.02 5.02 30.68 0.15 -4.87 16 12 C -0.11 -4.40 6.09 30.65 0.19 -4.22 16 13 C 0.07 2.42 5.26 86.33 0.45 2.87 16 14 N -0.54 -19.94 4.65 -900.92 -4.19 -24.12 16 15 C 0.10 2.91 5.03 85.56 0.43 3.34 16 16 C -0.04 -1.13 4.61 -19.70 -0.09 -1.22 16 17 C -0.14 -3.06 8.57 22.27 0.19 -2.87 16 18 C -0.09 -1.64 10.01 22.30 0.22 -1.42 16 19 C -0.12 -2.45 10.06 22.33 0.22 -2.23 16 20 C 0.02 0.60 7.41 22.98 0.17 0.77 16 21 O -0.21 -5.46 10.58 -9.19 -0.10 -5.55 16 22 C 0.01 0.16 11.96 66.85 0.80 0.96 16 23 C -0.22 -6.18 11.02 23.54 0.26 -5.92 16 24 C -0.13 -3.94 6.17 -20.21 -0.12 -4.06 16 25 C 0.08 3.55 4.68 86.33 0.40 3.96 16 26 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.06 3.17 6.15 -2.39 -0.01 3.16 16 28 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.50 6.32 -2.38 -0.02 2.48 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.37 7.99 -2.39 -0.02 1.35 16 34 H 0.08 2.32 7.98 -2.39 -0.02 2.31 16 35 H 0.14 2.63 8.04 -2.91 -0.02 2.61 16 36 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.24 3.13 8.06 -2.91 -0.02 3.10 16 39 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.06 2.42 8.01 -2.39 -0.02 2.40 16 Total: -1.00 -66.67 331.08 2.92 -63.75 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.01 Total: 14.12 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 3.92 Total: -40.54 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -3.94 Total: -77.77 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.10 Total: -5.55 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.67 2.92 -63.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236736253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.794 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds