Wall clock time and date at job start Tue Mar 31 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50515 * 300.07965 * 9 7 2 11 11 C 1.53116 * 109.50594 * 60.19850 * 9 7 2 12 12 C 1.53112 * 109.16591 * 177.59490 * 11 9 7 13 13 C 1.53044 * 109.28010 * 302.34710 * 12 11 9 14 14 N 1.46852 * 109.52198 * 59.17582 * 13 12 11 15 15 C 1.46898 * 110.99758 * 174.16640 * 14 13 12 16 16 C 1.50703 * 109.47016 * 294.20710 * 15 14 13 17 17 C 1.37861 * 120.02020 * 260.00324 * 16 15 14 18 18 C 1.38715 * 120.69196 * 179.97438 * 17 16 15 19 19 C 1.37765 * 120.27113 * 359.97438 * 18 17 16 20 20 C 1.39376 * 119.60237 * 0.02562 * 19 18 17 21 21 C 1.46793 * 134.34217 * 179.97438 * 20 19 18 22 22 C 1.33999 * 106.18055 * 179.31502 * 21 20 19 23 23 O 1.34452 * 110.16072 * 0.61311 * 22 21 20 24 24 C 1.34842 * 110.89453 * 359.45256 * 23 22 21 25 25 C 1.46849 * 111.19598 * 298.26251 * 14 13 12 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.52193 * 297.50264 * 11 9 7 28 28 H 1.09001 * 109.52141 * 57.68706 * 11 9 7 29 29 H 1.08999 * 109.50932 * 182.40546 * 12 11 9 30 30 H 1.09002 * 109.50350 * 62.28609 * 12 11 9 31 31 H 1.08998 * 109.45604 * 299.16544 * 13 12 11 32 32 H 1.08994 * 109.46418 * 179.19453 * 13 12 11 33 33 H 1.08997 * 109.47496 * 54.21105 * 15 14 13 34 34 H 1.09004 * 109.46482 * 174.21014 * 15 14 13 35 35 H 1.07999 * 119.65284 * 0.02562 * 17 16 15 36 36 H 1.07998 * 119.86436 * 180.02562 * 18 17 16 37 37 H 1.08004 * 120.19794 * 179.97438 * 19 18 17 38 38 H 1.07996 * 126.90686 * 0.02562 * 21 20 19 39 39 H 1.08002 * 124.92059 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.46434 * 301.72196 * 25 14 13 41 41 H 1.08994 * 109.46147 * 181.75810 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6234 -2.5570 0.8888 11 6 0.3737 -2.5830 -1.2526 12 6 -0.3419 -3.9363 -1.2753 13 6 0.6980 -5.0586 -1.2389 14 7 1.5112 -4.9349 -0.0223 15 6 2.4283 -6.0740 0.1159 16 6 1.6332 -7.3352 0.3362 17 6 1.4883 -7.8457 1.6086 18 6 0.7591 -9.0053 1.8274 19 6 0.1676 -9.6634 0.7715 20 6 0.3065 -9.1575 -0.5198 21 6 -0.1686 -9.5787 -1.8433 22 6 0.2841 -8.6636 -2.7112 23 8 1.0011 -7.7273 -2.0654 24 6 1.0407 -7.9802 -0.7415 25 6 2.2448 -3.6630 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3642 -1.7809 -1.2347 28 1 0.9972 -2.4856 -2.1414 29 1 -0.9350 -4.0193 -2.1860 30 1 -0.9951 -4.0172 -0.4064 31 1 1.3421 -4.9852 -2.1152 32 1 0.1913 -6.0235 -1.2405 33 1 3.0234 -6.1736 -0.7918 34 1 3.0887 -5.9075 0.9669 35 1 1.9468 -7.3372 2.4438 36 1 0.6539 -9.3933 2.8298 37 1 -0.3995 -10.5663 0.9432 38 1 -0.7724 -10.4449 -2.0702 39 1 0.1074 -8.6812 -3.7765 40 1 2.8817 -3.5963 -0.8832 41 1 2.8615 -3.6144 0.8963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236738593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:03 Heat of formation + Delta-G solvation = 27.953146 kcal Electronic energy + Delta-G solvation = -22551.648911 eV Core-core repulsion = 19397.472620 eV Total energy + Delta-G solvation = -3154.176291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.46574 -38.53576 -37.51829 -34.23947 -32.68720 -31.72125 -30.34402 -29.61872 -29.31652 -25.82012 -24.89179 -22.91646 -22.35000 -21.92343 -21.38690 -20.10076 -18.54352 -17.36577 -17.05522 -16.44850 -16.18891 -15.54875 -14.80512 -14.49461 -14.40703 -14.09537 -13.46150 -13.29561 -13.17970 -12.71263 -12.66063 -12.46362 -12.23974 -12.00314 -11.87584 -11.60687 -11.15084 -10.91452 -10.89507 -10.63348 -10.58493 -10.18398 -9.92283 -9.76911 -9.41496 -9.01336 -8.66358 -8.55226 -8.25807 -8.12667 -7.59117 -5.93442 -3.99724 0.93482 1.40408 2.35745 2.84200 3.34633 3.39239 3.41615 3.70415 4.43259 4.45386 4.60022 4.76333 4.91155 5.02277 5.20986 5.33042 5.36417 5.42253 5.54453 5.63400 5.77013 5.86517 5.91139 5.97046 6.14132 6.26638 6.33661 6.39070 6.41821 6.45597 6.54810 6.57736 6.68406 6.80376 6.81667 7.01575 7.19284 7.27917 7.44702 7.72530 7.78883 7.86112 8.13060 8.22112 8.52337 9.04152 9.64200 11.12490 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.003994 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.178033 B = 7008.096511 C = 7430.983940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.532 5.532 15 C 0.091 3.909 16 C -0.052 4.052 17 C -0.081 4.081 18 C -0.133 4.133 19 C -0.082 4.082 20 C -0.134 4.134 21 C -0.217 4.217 22 C 0.006 3.994 23 O -0.190 6.190 24 C 0.062 3.938 25 C 0.067 3.933 26 H 0.260 0.740 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.154 0.846 39 H 0.204 0.796 40 H 0.019 0.981 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -19.506 -1.714 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.256 5.256 15 C -0.037 4.037 16 C -0.053 4.053 17 C -0.100 4.100 18 C -0.151 4.151 19 C -0.100 4.100 20 C -0.135 4.135 21 C -0.236 4.236 22 C -0.059 4.059 23 O -0.091 6.091 24 C 0.014 3.986 25 C -0.059 4.059 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.172 0.828 39 H 0.221 0.779 40 H 0.037 0.963 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.007 -19.128 -1.434 19.182 hybrid contribution 0.810 0.703 -0.842 1.364 sum 0.817 -18.424 -2.277 18.583 Atomic orbital electron populations 1.69890 1.05840 1.26377 1.50600 1.24932 0.94813 0.98898 0.95152 0.86692 0.79610 0.83331 0.78529 1.21336 1.20305 1.20414 1.21115 0.92773 0.90687 1.50805 0.92905 1.18652 0.92606 0.90172 0.94860 0.94754 1.21645 0.99986 0.94678 0.98455 1.21671 0.97248 0.96523 0.99973 1.22160 0.95676 0.98907 0.89851 1.62094 1.23658 1.01589 1.38281 1.21006 0.93397 0.88268 1.01039 1.18829 1.00074 0.96675 0.89728 1.20846 0.98481 0.95591 0.95091 1.20992 0.99141 0.96215 0.98793 1.20443 0.99548 0.99757 0.90270 1.19917 1.02251 0.96812 0.94533 1.22455 1.07275 1.02846 0.90989 1.23965 0.95159 0.88354 0.98435 1.84165 1.61114 1.45920 1.17876 1.19368 1.00666 0.95884 0.82640 1.22338 0.96483 0.88332 0.98762 0.93036 0.89178 0.95227 0.93750 0.92287 0.95925 0.91918 0.94489 0.89828 0.84675 0.85433 0.85885 0.82791 0.77925 0.96292 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 11.36 55.43 0.63 -25.05 16 2 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.31 8.56 -34.44 -0.29 -14.60 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.43 2.26 -91.70 -0.21 1.23 16 10 H 0.03 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.69 5.03 -26.61 -0.13 -2.83 16 12 C -0.12 -2.45 6.09 -26.65 -0.16 -2.61 16 13 C 0.06 1.20 4.52 -3.83 -0.02 1.18 16 14 N -0.53 -10.42 4.65 -236.11 -1.10 -11.52 16 15 C 0.09 1.48 5.18 -4.98 -0.03 1.45 16 16 C -0.05 -0.79 5.17 -104.52 -0.54 -1.33 16 17 C -0.08 -1.05 9.64 -39.54 -0.38 -1.44 16 18 C -0.13 -1.51 10.03 -39.58 -0.40 -1.91 16 19 C -0.08 -0.96 10.10 -39.33 -0.40 -1.35 16 20 C -0.13 -1.80 6.40 -105.16 -0.67 -2.47 16 21 C -0.22 -2.38 11.14 -37.62 -0.42 -2.80 16 22 C 0.01 0.07 11.96 29.24 0.35 0.42 16 23 O -0.19 -2.78 8.51 3.81 0.03 -2.75 16 24 C 0.06 0.94 5.50 -38.49 -0.21 0.73 16 25 C 0.07 1.48 4.68 -3.83 -0.02 1.46 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 1.17 4.43 -51.93 -0.23 0.94 16 33 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.08 1.23 7.84 -51.93 -0.41 0.82 16 35 H 0.14 1.52 8.02 -52.49 -0.42 1.09 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -30.80 326.67 -10.14 -40.94 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.99 Total: 0.24 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -3.62 Total: -23.20 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.47 Total: -36.57 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: 0.03 Total: -2.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.80 -10.14 -40.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236738593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.893 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds