Wall clock time and date at job start Tue Mar 31 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50515 * 300.07965 * 9 7 2 11 11 C 1.53116 * 109.50594 * 60.19850 * 9 7 2 12 12 C 1.53112 * 109.16591 * 177.59490 * 11 9 7 13 13 C 1.53044 * 109.28010 * 302.34710 * 12 11 9 14 14 N 1.46852 * 109.52198 * 59.17582 * 13 12 11 15 15 C 1.46898 * 110.99758 * 174.16640 * 14 13 12 16 16 C 1.50703 * 109.47016 * 294.20710 * 15 14 13 17 17 C 1.37861 * 120.02020 * 260.00324 * 16 15 14 18 18 C 1.38715 * 120.69196 * 179.97438 * 17 16 15 19 19 C 1.37765 * 120.27113 * 359.97438 * 18 17 16 20 20 C 1.39376 * 119.60237 * 0.02562 * 19 18 17 21 21 C 1.46793 * 134.34217 * 179.97438 * 20 19 18 22 22 C 1.33999 * 106.18055 * 179.31502 * 21 20 19 23 23 O 1.34452 * 110.16072 * 0.61311 * 22 21 20 24 24 C 1.34842 * 110.89453 * 359.45256 * 23 22 21 25 25 C 1.46849 * 111.19598 * 298.26251 * 14 13 12 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.52193 * 297.50264 * 11 9 7 28 28 H 1.09001 * 109.52141 * 57.68706 * 11 9 7 29 29 H 1.08999 * 109.50932 * 182.40546 * 12 11 9 30 30 H 1.09002 * 109.50350 * 62.28609 * 12 11 9 31 31 H 1.08998 * 109.45604 * 299.16544 * 13 12 11 32 32 H 1.08994 * 109.46418 * 179.19453 * 13 12 11 33 33 H 1.08997 * 109.47496 * 54.21105 * 15 14 13 34 34 H 1.09004 * 109.46482 * 174.21014 * 15 14 13 35 35 H 1.07999 * 119.65284 * 0.02562 * 17 16 15 36 36 H 1.07998 * 119.86436 * 180.02562 * 18 17 16 37 37 H 1.08004 * 120.19794 * 179.97438 * 19 18 17 38 38 H 1.07996 * 126.90686 * 0.02562 * 21 20 19 39 39 H 1.08002 * 124.92059 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.46434 * 301.72196 * 25 14 13 41 41 H 1.08994 * 109.46147 * 181.75810 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6234 -2.5570 0.8888 11 6 0.3737 -2.5830 -1.2526 12 6 -0.3419 -3.9363 -1.2753 13 6 0.6980 -5.0586 -1.2389 14 7 1.5112 -4.9349 -0.0223 15 6 2.4283 -6.0740 0.1159 16 6 1.6332 -7.3352 0.3362 17 6 1.4883 -7.8457 1.6086 18 6 0.7591 -9.0053 1.8274 19 6 0.1676 -9.6634 0.7715 20 6 0.3065 -9.1575 -0.5198 21 6 -0.1686 -9.5787 -1.8433 22 6 0.2841 -8.6636 -2.7112 23 8 1.0011 -7.7273 -2.0654 24 6 1.0407 -7.9802 -0.7415 25 6 2.2448 -3.6630 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 -0.3642 -1.7809 -1.2347 28 1 0.9972 -2.4856 -2.1414 29 1 -0.9350 -4.0193 -2.1860 30 1 -0.9951 -4.0172 -0.4064 31 1 1.3421 -4.9852 -2.1152 32 1 0.1913 -6.0235 -1.2405 33 1 3.0234 -6.1736 -0.7918 34 1 3.0887 -5.9075 0.9669 35 1 1.9468 -7.3372 2.4438 36 1 0.6539 -9.3933 2.8298 37 1 -0.3995 -10.5663 0.9432 38 1 -0.7724 -10.4449 -2.0702 39 1 0.1074 -8.6812 -3.7765 40 1 2.8817 -3.5963 -0.8832 41 1 2.8615 -3.6144 0.8963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236738593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:02 Heat of formation + Delta-G solvation = 10.715583 kcal Electronic energy + Delta-G solvation = -22552.396388 eV Core-core repulsion = 19397.472620 eV Total energy + Delta-G solvation = -3154.923768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.40050 -40.00333 -38.69289 -35.88461 -34.21071 -33.09831 -31.82332 -31.21240 -30.24469 -27.14506 -26.92694 -24.10137 -23.51865 -23.35620 -22.83631 -21.24826 -20.38551 -18.49603 -18.26330 -17.92365 -17.46123 -16.70844 -16.41613 -16.07489 -15.72580 -15.44189 -14.98245 -14.72278 -14.46797 -14.30818 -14.05149 -13.71200 -13.53256 -13.46415 -13.01637 -12.88406 -12.81422 -12.62559 -12.55215 -12.42682 -11.88985 -11.85457 -11.72156 -11.40535 -10.99858 -10.87277 -10.68623 -10.37856 -9.52645 -9.22046 -9.00205 -8.07341 -6.22018 0.00721 0.44483 1.42245 1.43878 1.49591 1.51552 1.96695 2.43311 2.70962 3.19434 3.24126 3.58079 3.72442 3.88786 4.09422 4.16442 4.21038 4.33654 4.38089 4.43400 4.52597 4.57456 4.59432 4.69065 4.73822 4.79740 4.86044 4.92316 4.97202 5.05437 5.14669 5.32266 5.33763 5.46668 5.48867 5.56689 5.56728 5.62631 5.80973 5.93537 6.09001 6.17746 6.24503 6.29028 6.44232 6.89852 7.45799 8.97391 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030192 B = 0.003994 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.178033 B = 7008.096511 C = 7430.983940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.284 1.284 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.054 3.946 10 H -0.002 1.002 11 C -0.101 4.101 12 C -0.109 4.109 13 C 0.073 3.927 14 N -0.540 5.540 15 C 0.095 3.905 16 C -0.080 4.080 17 C -0.087 4.087 18 C -0.133 4.133 19 C -0.081 4.081 20 C -0.152 4.152 21 C -0.218 4.218 22 C -0.001 4.001 23 O -0.214 6.214 24 C 0.032 3.968 25 C 0.081 3.919 26 H 0.260 0.740 27 H 0.060 0.940 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.096 0.904 35 H 0.148 0.852 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.184 0.816 39 H 0.241 0.759 40 H 0.014 0.986 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 -21.320 -1.722 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.209 1.209 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.016 0.984 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.054 4.054 14 N -0.264 5.264 15 C -0.032 4.032 16 C -0.080 4.080 17 C -0.105 4.105 18 C -0.151 4.151 19 C -0.099 4.099 20 C -0.153 4.153 21 C -0.236 4.236 22 C -0.065 4.065 23 O -0.117 6.117 24 C -0.015 4.015 25 C -0.047 4.047 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.170 0.830 38 H 0.202 0.798 39 H 0.257 0.743 40 H 0.032 0.968 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.070 -20.964 -1.440 21.013 hybrid contribution 0.749 1.173 -0.823 1.617 sum 0.819 -19.790 -2.264 19.936 Atomic orbital electron populations 1.70039 1.07253 1.27168 1.51075 1.25737 0.95654 1.02375 0.94667 0.85647 0.78390 0.78974 0.78838 1.20917 1.19496 1.19739 1.21481 0.93034 0.92025 1.51065 0.92869 1.18569 0.92937 0.91333 0.93612 0.98409 1.21450 0.99120 0.95813 0.97564 1.21585 0.97485 0.95156 1.00495 1.22032 0.95103 0.98634 0.89677 1.62034 1.24360 1.01691 1.38328 1.21001 0.93173 0.87737 1.01268 1.18835 1.01618 0.96653 0.90943 1.21131 0.98471 0.96252 0.94653 1.21369 0.98024 0.95357 1.00337 1.20882 0.98960 1.00431 0.89638 1.20380 1.02227 0.96532 0.96198 1.22848 1.07273 1.03713 0.89787 1.24791 0.94194 0.87509 1.00036 1.84124 1.62108 1.47445 1.17979 1.19637 1.01788 0.97090 0.82950 1.22036 0.95415 0.88493 0.98727 0.93042 0.92174 0.95984 0.91651 0.93422 0.96352 0.90520 0.95045 0.88583 0.83465 0.82320 0.82979 0.79827 0.74286 0.96810 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.32 11.36 21.45 0.24 -54.08 16 2 C 0.01 0.82 5.31 84.66 0.45 1.27 16 3 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.54 -30.55 8.56 25.60 0.22 -30.33 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.05 2.88 2.26 -11.49 -0.03 2.86 16 10 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 11 C -0.10 -5.14 5.03 30.67 0.15 -4.99 16 12 C -0.11 -4.66 6.09 30.65 0.19 -4.48 16 13 C 0.07 2.85 4.52 86.33 0.39 3.24 16 14 N -0.54 -21.33 4.65 -900.91 -4.19 -25.52 16 15 C 0.10 3.10 5.18 85.56 0.44 3.54 16 16 C -0.08 -2.36 5.17 -19.80 -0.10 -2.46 16 17 C -0.09 -2.12 9.64 22.29 0.21 -1.90 16 18 C -0.13 -2.67 10.03 22.27 0.22 -2.45 16 19 C -0.08 -1.67 10.10 22.43 0.23 -1.44 16 20 C -0.15 -3.80 6.40 -20.21 -0.13 -3.93 16 21 C -0.22 -4.23 11.14 23.54 0.26 -3.97 16 22 C 0.00 -0.03 11.96 66.85 0.80 0.77 16 23 O -0.21 -6.12 8.51 -9.29 -0.08 -6.20 16 24 C 0.03 0.96 5.50 22.98 0.13 1.08 16 25 C 0.08 3.60 4.68 86.33 0.40 4.00 16 26 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.06 3.40 6.16 -2.39 -0.01 3.39 16 28 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 2.83 4.43 -2.39 -0.01 2.82 16 33 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 34 H 0.10 2.79 7.84 -2.38 -0.02 2.77 16 35 H 0.15 3.09 8.02 -2.91 -0.02 3.06 16 36 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.24 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 2.78 8.01 -2.39 -0.02 2.76 16 Total: -1.00 -68.20 326.67 2.86 -65.34 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.01 Total: 13.26 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 3.84 Total: -39.17 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.94 Total: -79.60 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.08 Total: -6.20 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.20 2.86 -65.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236738593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.057 kcal (2) G-P(sol) polarization free energy of solvation -68.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds