Wall clock time and date at job start Tue Mar 31 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48499 * 109.47596 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47312 * 300.00399 * 3 2 1 6 6 H 1.48504 * 109.46890 * 59.99905 * 3 2 1 7 7 C 1.37882 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00302 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.53305 * 60.10234 * 9 7 2 11 11 C 1.53120 * 109.50530 * 300.00619 * 9 7 2 12 12 C 1.53120 * 109.16070 * 182.39814 * 11 9 7 13 13 C 1.53041 * 109.27605 * 57.65678 * 12 11 9 14 14 N 1.46850 * 109.52038 * 300.81667 * 13 12 11 15 15 C 1.46899 * 110.99689 * 185.84175 * 14 13 12 16 16 C 1.50699 * 109.47348 * 66.04723 * 15 14 13 17 17 C 1.37854 * 120.02026 * 260.02094 * 16 15 14 18 18 C 1.38720 * 120.68807 * 179.97438 * 17 16 15 19 19 C 1.37759 * 120.27884 * 0.06188 * 18 17 16 20 20 C 1.39383 * 119.60062 * 359.91756 * 19 18 17 21 21 C 1.46785 * 134.34779 * 180.02562 * 20 19 18 22 22 C 1.34000 * 106.18159 * 180.02562 * 21 20 19 23 23 O 1.34441 * 110.16252 * 0.22997 * 22 21 20 24 24 C 1.34841 * 110.89425 * 359.60731 * 23 22 21 25 25 C 1.46846 * 111.19905 * 61.74516 * 14 13 12 26 26 H 0.96998 * 120.00400 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.52132 * 62.49570 * 11 9 7 28 28 H 1.08997 * 109.57304 * 302.33873 * 11 9 7 29 29 H 1.08992 * 109.50491 * 297.71121 * 12 11 9 30 30 H 1.09003 * 109.50065 * 177.59032 * 12 11 9 31 31 H 1.09000 * 109.46326 * 180.80395 * 13 12 11 32 32 H 1.08998 * 109.46764 * 60.83407 * 13 12 11 33 33 H 1.08998 * 109.47598 * 306.04123 * 15 14 13 34 34 H 1.09006 * 109.46874 * 186.04770 * 15 14 13 35 35 H 1.07996 * 119.65724 * 359.97364 * 17 16 15 36 36 H 1.08001 * 119.86257 * 180.02562 * 18 17 16 37 37 H 1.08005 * 120.20199 * 180.02562 * 19 18 17 38 38 H 1.07996 * 126.91394 * 0.04574 * 21 20 19 39 39 H 1.08002 * 124.91550 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.46312 * 58.26802 * 25 14 13 41 41 H 1.08996 * 109.46291 * 178.23906 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6251 -2.5586 -0.8909 11 6 0.3709 -2.5814 1.2497 12 6 -0.3448 -3.9348 1.2723 13 6 0.6954 -5.0570 1.2398 14 7 1.5113 -4.9348 0.0250 15 6 2.4287 -6.0741 -0.1098 16 6 1.6345 -7.3346 -0.3366 17 6 1.3966 -8.1979 0.7115 18 6 0.6669 -9.3617 0.5184 19 6 0.1698 -9.6711 -0.7286 20 6 0.4028 -8.8063 -1.7966 21 6 0.0386 -8.8105 -3.2186 22 6 0.5595 -7.6918 -3.7408 23 8 1.2122 -6.9979 -2.7922 24 6 1.1414 -7.6270 -1.6016 25 6 2.2450 -3.6629 0.0038 26 1 -0.4850 0.8400 0.0004 27 1 -0.3670 -1.7795 1.2289 28 1 0.9914 -2.4824 2.1403 29 1 -0.9959 -4.0168 0.4021 30 1 -0.9399 -4.0166 2.1819 31 1 0.1887 -6.0220 1.2414 32 1 1.3375 -4.9827 2.1175 33 1 3.0186 -6.1753 0.8011 34 1 3.0941 -5.9065 -0.9567 35 1 1.7825 -7.9658 1.6931 36 1 0.4881 -10.0284 1.3491 37 1 -0.3986 -10.5773 -0.8774 38 1 -0.5342 -9.5636 -3.7392 39 1 0.4714 -7.3931 -4.7749 40 1 2.8797 -3.5950 0.8873 41 1 2.8637 -3.6155 -0.8923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236738597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:06 Heat of formation + Delta-G solvation = 25.045216 kcal Electronic energy + Delta-G solvation = -22405.054361 eV Core-core repulsion = 19250.751972 eV Total energy + Delta-G solvation = -3154.302388 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.31009 -38.65426 -37.42430 -34.20227 -32.69472 -31.68467 -30.28724 -29.73556 -29.19673 -25.83295 -24.89174 -22.92380 -22.23877 -21.89179 -21.36788 -20.18231 -18.55082 -17.29075 -16.96339 -16.35907 -15.93563 -15.54907 -15.01923 -14.54848 -14.39392 -14.02068 -13.59577 -13.31284 -13.04670 -12.74050 -12.61277 -12.47713 -12.17304 -11.99674 -11.92682 -11.65212 -11.15694 -10.94462 -10.88971 -10.64820 -10.55380 -10.13107 -9.95315 -9.79395 -9.42989 -9.01929 -8.65386 -8.49356 -8.27222 -8.10362 -7.59615 -5.93932 -4.00024 0.94662 1.44326 2.41675 2.95422 3.31947 3.39916 3.43672 3.71687 4.43972 4.48970 4.64083 4.68236 4.96064 5.06481 5.21334 5.36090 5.37579 5.42792 5.55399 5.61342 5.74372 5.82552 5.90655 5.96800 6.12924 6.25932 6.31780 6.39461 6.42967 6.44294 6.51546 6.57273 6.70161 6.77570 6.79998 7.01672 7.26426 7.28584 7.44256 7.71717 7.79005 7.85950 8.13360 8.22069 8.52205 9.04334 9.64071 11.12068 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.004081 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.879674 B = 6859.532125 C = 7311.844239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.531 5.531 15 C 0.092 3.908 16 C -0.052 4.052 17 C -0.096 4.096 18 C -0.136 4.136 19 C -0.081 4.081 20 C -0.136 4.136 21 C -0.222 4.222 22 C 0.013 3.987 23 O -0.181 6.181 24 C 0.078 3.922 25 C 0.069 3.931 26 H 0.258 0.742 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.154 0.846 39 H 0.205 0.795 40 H 0.019 0.981 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 -18.883 -1.878 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.255 5.255 15 C -0.036 4.036 16 C -0.053 4.053 17 C -0.115 4.115 18 C -0.154 4.154 19 C -0.099 4.099 20 C -0.137 4.137 21 C -0.241 4.241 22 C -0.053 4.053 23 O -0.081 6.081 24 C 0.030 3.970 25 C -0.058 4.058 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.172 0.828 39 H 0.221 0.779 40 H 0.037 0.963 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.198 -18.484 -2.312 18.629 hybrid contribution 0.787 0.748 0.602 1.241 sum 0.986 -17.736 -1.710 17.846 Atomic orbital electron populations 1.69905 1.05841 1.26147 1.50829 1.24933 0.94809 0.98923 0.95182 0.86580 0.80135 0.84010 0.77511 1.19864 1.21065 1.21121 1.21192 0.92852 0.90665 1.50482 0.92799 1.18660 0.92609 0.90211 0.94871 0.94803 1.21647 1.00024 0.94714 0.98418 1.21664 0.97203 0.96480 1.00083 1.22067 0.95675 0.98962 0.89912 1.62016 1.23687 1.01622 1.38215 1.20984 0.93370 0.88340 1.00894 1.18784 1.00649 0.97317 0.88553 1.20833 0.99002 0.93959 0.97703 1.20927 0.99858 0.97693 0.96887 1.20428 0.99646 0.98531 0.91310 1.19960 1.02566 0.96650 0.94477 1.22434 1.07888 1.00971 0.92855 1.23998 0.95420 0.91829 0.94043 1.84117 1.62270 1.45895 1.15852 1.19317 0.99786 0.91637 0.86297 1.22322 0.96451 0.88260 0.98746 0.93155 0.89147 0.95190 0.92246 0.93610 0.92238 0.95974 0.94271 0.90161 0.85210 0.85582 0.85917 0.82835 0.77853 0.96261 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.35 55.43 0.63 -25.06 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.27 8.56 -34.44 -0.29 -14.57 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.03 0.97 8.14 -51.92 -0.42 0.55 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.80 16 12 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 13 C 0.06 1.14 5.26 -3.83 -0.02 1.12 16 14 N -0.53 -10.32 4.65 -236.11 -1.10 -11.42 16 15 C 0.09 1.49 5.11 -4.98 -0.03 1.47 16 16 C -0.05 -0.79 4.60 -104.52 -0.48 -1.27 16 17 C -0.10 -1.22 8.53 -39.54 -0.34 -1.56 16 18 C -0.14 -1.52 10.03 -39.58 -0.40 -1.92 16 19 C -0.08 -0.95 10.10 -39.33 -0.40 -1.35 16 20 C -0.14 -1.87 6.40 -105.16 -0.67 -2.54 16 21 C -0.22 -2.57 11.14 -37.62 -0.42 -2.99 16 22 C 0.01 0.15 11.96 29.24 0.35 0.50 16 23 O -0.18 -2.88 10.58 3.84 0.04 -2.84 16 24 C 0.08 1.23 7.11 -38.49 -0.27 0.95 16 25 C 0.07 1.51 4.68 -3.84 -0.02 1.49 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.09 2.44 6.15 -51.93 -0.32 2.13 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.01 6.31 -51.93 -0.33 0.68 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.04 0.58 7.97 -51.93 -0.41 0.17 16 34 H 0.08 1.31 7.98 -51.93 -0.41 0.89 16 35 H 0.13 1.41 8.02 -52.49 -0.42 0.99 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.29 8.01 -51.93 -0.42 0.87 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -30.90 331.18 -10.12 -41.02 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.08 Total: 0.02 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -3.58 Total: -23.14 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.47 Total: -36.48 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.90 -10.12 -41.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236738597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.064 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds