Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48499 * 109.47596 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47312 * 300.00399 * 3 2 1 6 6 H 1.48504 * 109.46890 * 59.99905 * 3 2 1 7 7 C 1.37882 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00302 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.53305 * 60.10234 * 9 7 2 11 11 C 1.53120 * 109.50530 * 300.00619 * 9 7 2 12 12 C 1.53120 * 109.16070 * 182.39814 * 11 9 7 13 13 C 1.53041 * 109.27605 * 57.65678 * 12 11 9 14 14 N 1.46850 * 109.52038 * 300.81667 * 13 12 11 15 15 C 1.46899 * 110.99689 * 185.84175 * 14 13 12 16 16 C 1.50699 * 109.47348 * 66.04723 * 15 14 13 17 17 C 1.37854 * 120.02026 * 260.02094 * 16 15 14 18 18 C 1.38720 * 120.68807 * 179.97438 * 17 16 15 19 19 C 1.37759 * 120.27884 * 0.06188 * 18 17 16 20 20 C 1.39383 * 119.60062 * 359.91756 * 19 18 17 21 21 C 1.46785 * 134.34779 * 180.02562 * 20 19 18 22 22 C 1.34000 * 106.18159 * 180.02562 * 21 20 19 23 23 O 1.34441 * 110.16252 * 0.22997 * 22 21 20 24 24 C 1.34841 * 110.89425 * 359.60731 * 23 22 21 25 25 C 1.46846 * 111.19905 * 61.74516 * 14 13 12 26 26 H 0.96998 * 120.00400 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.52132 * 62.49570 * 11 9 7 28 28 H 1.08997 * 109.57304 * 302.33873 * 11 9 7 29 29 H 1.08992 * 109.50491 * 297.71121 * 12 11 9 30 30 H 1.09003 * 109.50065 * 177.59032 * 12 11 9 31 31 H 1.09000 * 109.46326 * 180.80395 * 13 12 11 32 32 H 1.08998 * 109.46764 * 60.83407 * 13 12 11 33 33 H 1.08998 * 109.47598 * 306.04123 * 15 14 13 34 34 H 1.09006 * 109.46874 * 186.04770 * 15 14 13 35 35 H 1.07996 * 119.65724 * 359.97364 * 17 16 15 36 36 H 1.08001 * 119.86257 * 180.02562 * 18 17 16 37 37 H 1.08005 * 120.20199 * 180.02562 * 19 18 17 38 38 H 1.07996 * 126.91394 * 0.04574 * 21 20 19 39 39 H 1.08002 * 124.91550 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.46312 * 58.26802 * 25 14 13 41 41 H 1.08996 * 109.46291 * 178.23906 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 1 0.6251 -2.5586 -0.8909 11 6 0.3709 -2.5814 1.2497 12 6 -0.3448 -3.9348 1.2723 13 6 0.6954 -5.0570 1.2398 14 7 1.5113 -4.9348 0.0250 15 6 2.4287 -6.0741 -0.1098 16 6 1.6345 -7.3346 -0.3366 17 6 1.3966 -8.1979 0.7115 18 6 0.6669 -9.3617 0.5184 19 6 0.1698 -9.6711 -0.7286 20 6 0.4028 -8.8063 -1.7966 21 6 0.0386 -8.8105 -3.2186 22 6 0.5595 -7.6918 -3.7408 23 8 1.2122 -6.9979 -2.7922 24 6 1.1414 -7.6270 -1.6016 25 6 2.2450 -3.6629 0.0038 26 1 -0.4850 0.8400 0.0004 27 1 -0.3670 -1.7795 1.2289 28 1 0.9914 -2.4824 2.1403 29 1 -0.9959 -4.0168 0.4021 30 1 -0.9399 -4.0166 2.1819 31 1 0.1887 -6.0220 1.2414 32 1 1.3375 -4.9827 2.1175 33 1 3.0186 -6.1753 0.8011 34 1 3.0941 -5.9065 -0.9567 35 1 1.7825 -7.9658 1.6931 36 1 0.4881 -10.0284 1.3491 37 1 -0.3986 -10.5773 -0.8774 38 1 -0.5342 -9.5636 -3.7392 39 1 0.4714 -7.3931 -4.7749 40 1 2.8797 -3.5950 0.8873 41 1 2.8637 -3.6155 -0.8923 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236738597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = 7.530320 kcal Electronic energy + Delta-G solvation = -22405.813864 eV Core-core repulsion = 19250.751972 eV Total energy + Delta-G solvation = -3155.061891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.28381 -40.08284 -38.63354 -35.84580 -34.22652 -33.05771 -31.77806 -31.26011 -30.18485 -27.14579 -26.92323 -24.11242 -23.50664 -23.11967 -22.96247 -21.29248 -20.36815 -18.48144 -18.23725 -17.87055 -17.08578 -16.75023 -16.46458 -16.25122 -15.82689 -15.27885 -15.00052 -14.80275 -14.41223 -14.32589 -14.03870 -13.66129 -13.49757 -13.39428 -13.09859 -12.90664 -12.86217 -12.66678 -12.52822 -12.34884 -11.89383 -11.81742 -11.72318 -11.39560 -11.01431 -10.85526 -10.67258 -10.39082 -9.47434 -9.19310 -8.97876 -8.08371 -6.23082 0.00086 0.47801 1.40078 1.41389 1.50554 1.53296 2.05327 2.42399 2.72250 3.18400 3.23822 3.58819 3.70570 3.98723 4.08309 4.18689 4.22566 4.32671 4.38953 4.45952 4.49626 4.59985 4.61304 4.66997 4.73725 4.80231 4.87077 4.95021 4.98189 5.08760 5.16147 5.35443 5.36012 5.45757 5.50394 5.54403 5.57999 5.62774 5.83001 5.94520 6.11503 6.19525 6.29637 6.34804 6.45064 6.89539 7.44947 8.96669 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.004081 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.879674 B = 6859.532125 C = 7311.844239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.052 0.948 9 C 0.054 3.946 10 H -0.010 1.010 11 C -0.102 4.102 12 C -0.110 4.110 13 C 0.069 3.931 14 N -0.546 5.546 15 C 0.098 3.902 16 C -0.078 4.078 17 C -0.094 4.094 18 C -0.132 4.132 19 C -0.080 4.080 20 C -0.155 4.155 21 C -0.221 4.221 22 C -0.002 4.002 23 O -0.216 6.216 24 C 0.042 3.958 25 C 0.084 3.916 26 H 0.260 0.740 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.185 0.815 39 H 0.238 0.762 40 H 0.021 0.979 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 -20.968 -0.987 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.035 3.965 10 H 0.008 0.992 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.058 4.058 14 N -0.270 5.270 15 C -0.029 4.029 16 C -0.079 4.079 17 C -0.113 4.113 18 C -0.150 4.150 19 C -0.098 4.098 20 C -0.156 4.156 21 C -0.239 4.239 22 C -0.066 4.066 23 O -0.118 6.118 24 C -0.006 4.006 25 C -0.044 4.044 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.170 0.830 38 H 0.202 0.798 39 H 0.254 0.746 40 H 0.039 0.961 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.243 -20.593 -1.422 20.643 hybrid contribution 0.729 1.316 0.285 1.531 sum 0.972 -19.277 -1.137 19.335 Atomic orbital electron populations 1.70052 1.07263 1.27026 1.51257 1.25741 0.95655 1.02404 0.94695 0.85533 0.79060 0.79582 0.77630 1.19106 1.20670 1.20437 1.21542 0.93004 0.92078 1.50805 0.92961 1.18568 0.92931 0.91354 0.93614 0.99172 1.21443 0.99095 0.96044 0.97408 1.21578 0.97540 0.95116 1.00545 1.22009 0.95132 0.98824 0.89851 1.61905 1.24513 1.01498 1.39098 1.20927 0.93071 0.87803 1.01146 1.18821 1.02184 0.97488 0.89403 1.21139 0.98492 0.93904 0.97726 1.21345 0.98469 0.97391 0.97772 1.20878 0.99057 0.98955 0.90912 1.20407 1.02612 0.96484 0.96062 1.22848 1.07585 1.01397 0.92104 1.24780 0.95016 0.91954 0.94874 1.84074 1.63499 1.47414 1.16770 1.19736 1.01269 0.92946 0.86610 1.21972 0.95351 0.88609 0.98449 0.93060 0.92392 0.95441 0.94027 0.91022 0.90101 0.94837 0.92592 0.91290 0.83316 0.82107 0.82990 0.79764 0.74573 0.96056 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 11.35 21.45 0.24 -54.38 16 2 C 0.01 0.78 5.30 84.66 0.45 1.23 16 3 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.54 -30.68 8.56 25.60 0.22 -30.46 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.05 2.89 2.26 -11.49 -0.03 2.87 16 10 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 11 C -0.10 -5.07 5.02 30.67 0.15 -4.92 16 12 C -0.11 -4.50 6.09 30.65 0.19 -4.31 16 13 C 0.07 2.48 5.26 86.33 0.45 2.93 16 14 N -0.55 -21.34 4.65 -900.92 -4.19 -25.53 16 15 C 0.10 3.15 5.11 85.56 0.44 3.59 16 16 C -0.08 -2.29 4.60 -19.80 -0.09 -2.38 16 17 C -0.09 -2.14 8.53 22.29 0.19 -1.95 16 18 C -0.13 -2.48 10.03 22.27 0.22 -2.26 16 19 C -0.08 -1.64 10.10 22.43 0.23 -1.41 16 20 C -0.15 -4.04 6.40 -20.21 -0.13 -4.17 16 21 C -0.22 -4.75 11.14 23.54 0.26 -4.49 16 22 C 0.00 -0.05 11.96 66.85 0.80 0.75 16 23 O -0.22 -7.06 10.58 -9.18 -0.10 -7.15 16 24 C 0.04 1.32 7.11 22.98 0.16 1.48 16 25 C 0.08 3.76 4.68 86.33 0.40 4.16 16 26 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.06 3.26 6.15 -2.39 -0.01 3.24 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.08 2.57 6.31 -2.39 -0.02 2.56 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.59 7.97 -2.39 -0.02 1.57 16 34 H 0.07 2.32 7.98 -2.38 -0.02 2.31 16 35 H 0.15 2.71 8.02 -2.91 -0.02 2.69 16 36 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.24 3.28 8.06 -2.91 -0.02 3.25 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 2.36 8.01 -2.39 -0.02 2.34 16 Total: -1.00 -69.74 331.18 2.92 -66.83 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.01 Total: 12.94 kcal Atomic # 6 Polarization: -43.26 SS G_CDS: 3.92 Total: -39.34 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -3.94 Total: -79.90 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.10 Total: -7.15 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.74 2.92 -66.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236738597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.357 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds