Wall clock time and date at job start Tue Mar 31 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48491 * 109.47033 * 239.99883 * 3 2 1 5 5 H 1.48497 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46985 * 119.99567 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.51728 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.27589 * 182.37636 * 10 9 7 12 12 N 1.46847 * 109.51335 * 59.18419 * 11 10 9 13 13 C 1.46899 * 110.99862 * 174.15436 * 12 11 10 14 14 C 1.50705 * 109.46990 * 170.00184 * 13 12 11 15 15 C 1.37758 * 120.20063 * 260.00342 * 14 13 12 16 16 C 1.38720 * 120.27716 * 179.97438 * 15 14 13 17 17 C 1.37864 * 120.68862 * 359.97400 * 16 15 14 18 18 C 1.38881 * 119.95909 * 0.02562 * 17 16 15 19 19 O 1.34839 * 133.42098 * 179.97438 * 18 17 16 20 20 C 1.34446 * 110.89381 * 180.02562 * 19 18 17 21 21 C 1.33995 * 110.16150 * 0.02562 * 20 19 18 22 22 C 1.39385 * 120.19793 * 79.72182 * 14 13 12 23 23 C 1.46847 * 111.20163 * 298.24410 * 12 11 10 24 24 C 1.53041 * 109.51486 * 61.75514 * 23 12 11 25 25 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.52260 * 300.12099 * 9 7 2 27 27 H 1.09000 * 109.50507 * 62.44301 * 10 9 7 28 28 H 1.08999 * 109.54263 * 302.33234 * 10 9 7 29 29 H 1.09002 * 109.46396 * 179.19729 * 11 10 9 30 30 H 1.08994 * 109.46485 * 299.17654 * 11 10 9 31 31 H 1.09002 * 109.47485 * 289.99621 * 13 12 11 32 32 H 1.08997 * 109.47251 * 50.00559 * 13 12 11 33 33 H 1.08002 * 119.85993 * 359.95045 * 15 14 13 34 34 H 1.08002 * 119.65354 * 179.97438 * 16 15 14 35 35 H 1.08002 * 120.01687 * 180.02562 * 17 16 15 36 36 H 1.08001 * 124.91642 * 180.02562 * 20 19 18 37 37 H 1.08001 * 126.90154 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46836 * 301.74653 * 23 12 11 39 39 H 1.08995 * 109.45748 * 181.76188 * 23 12 11 40 40 H 1.08996 * 109.50341 * 180.87808 * 24 23 12 41 41 H 1.08996 * 109.50165 * 60.75338 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9852 -0.0594 12 7 0.6532 -5.0194 -1.2760 13 6 0.0068 -6.3285 -1.4380 14 6 -1.0109 -6.2524 -2.5469 15 6 -2.3484 -6.1065 -2.2510 16 6 -3.2865 -6.0357 -3.2705 17 6 -2.8975 -6.1094 -4.5910 18 6 -1.5541 -6.2565 -4.9111 19 8 -0.8848 -6.3557 -6.0774 20 6 0.4359 -6.4873 -5.8626 21 6 0.6928 -6.4810 -4.5475 22 6 -0.6040 -6.3233 -3.8781 23 6 -0.3407 -3.9383 -1.2761 24 6 0.3751 -2.5858 -1.2525 25 1 -0.4850 0.8401 0.0004 26 1 0.6219 -2.5566 0.8889 27 1 2.8426 -3.6321 0.9114 28 1 2.8994 -3.5846 -0.8674 29 1 2.1801 -5.8162 -0.0739 30 1 0.8312 -5.0704 0.8161 31 1 0.7593 -7.0770 -1.6864 32 1 -0.4892 -6.6064 -0.5081 33 1 -2.6680 -6.0473 -1.2211 34 1 -4.3326 -5.9217 -3.0271 35 1 -3.6371 -6.0527 -5.3761 36 1 1.1817 -6.5841 -6.6377 37 1 1.6600 -6.5699 -4.0752 38 1 -0.9757 -4.0285 -0.3948 39 1 -0.9539 -4.0090 -2.1744 40 1 -0.3629 -1.7838 -1.2369 41 1 0.9998 -2.4892 -2.1404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236744197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:35 Heat of formation + Delta-G solvation = 26.604657 kcal Electronic energy + Delta-G solvation = -22488.662030 eV Core-core repulsion = 19334.427264 eV Total energy + Delta-G solvation = -3154.234766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.31947 -38.85797 -37.33376 -34.18769 -32.71272 -31.62199 -30.12209 -29.67522 -29.26837 -26.48587 -24.42173 -22.78064 -22.35088 -21.95628 -21.38627 -20.08315 -18.53987 -17.22788 -16.96234 -16.34755 -16.00076 -15.59754 -15.21157 -14.42769 -14.36918 -14.33404 -13.51456 -13.23089 -12.92563 -12.83518 -12.56430 -12.50262 -12.09908 -12.03794 -11.91815 -11.48146 -11.26883 -10.91709 -10.78857 -10.70138 -10.41481 -10.18079 -10.00401 -9.92535 -9.38694 -8.92741 -8.69164 -8.49075 -8.25259 -8.07348 -7.66826 -5.93440 -3.98717 0.97063 1.43611 2.49458 2.87929 3.35070 3.39529 3.42310 3.72316 4.47942 4.53112 4.59834 4.70428 4.97544 5.13350 5.21391 5.36573 5.39920 5.44572 5.55612 5.71001 5.75127 5.79837 5.91909 5.99716 6.14924 6.23442 6.27138 6.35094 6.37181 6.49203 6.63272 6.66124 6.68052 6.70955 6.88934 7.10976 7.20563 7.24268 7.48714 7.65219 7.72205 7.87007 8.09342 8.20643 8.52403 9.04685 9.65358 11.12719 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.004282 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.127515 B = 6537.453495 C = 6670.337619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.526 5.526 13 C 0.091 3.909 14 C -0.021 4.021 15 C -0.135 4.135 16 C -0.091 4.091 17 C -0.115 4.115 18 C 0.048 3.952 19 O -0.200 6.200 20 C -0.009 4.009 21 C -0.187 4.187 22 C -0.111 4.111 23 C 0.057 3.943 24 C -0.102 4.102 25 H 0.259 0.741 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.205 0.795 37 H 0.158 0.842 38 H 0.020 0.980 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -15.132 -7.805 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.251 5.251 13 C -0.036 4.036 14 C -0.021 4.021 15 C -0.154 4.154 16 C -0.109 4.109 17 C -0.134 4.134 18 C 0.001 3.999 19 O -0.102 6.102 20 C -0.073 4.073 21 C -0.206 4.206 22 C -0.112 4.112 23 C -0.070 4.070 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.221 0.779 37 H 0.176 0.824 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.686 -14.917 -8.438 17.530 hybrid contribution 0.083 0.874 0.768 1.166 sum -3.603 -14.043 -7.670 16.402 Atomic orbital electron populations 1.69870 1.05866 1.26357 1.51028 1.24963 0.94823 0.98957 0.95229 0.86705 0.79636 0.83381 0.78543 1.20337 1.21382 1.20380 1.21173 0.92810 0.90710 1.50193 0.92852 1.18678 0.92684 0.91706 0.93963 1.21670 0.98691 0.93710 1.00244 1.22140 0.95792 0.99341 0.89476 1.62175 1.23388 1.01291 1.38254 1.21062 0.94677 0.93525 0.94380 1.19255 0.93925 0.96585 0.92369 1.20965 0.92143 1.02604 0.99639 1.20843 0.99749 0.99157 0.91131 1.19827 0.90867 1.05673 0.97021 1.19631 0.93912 1.03164 0.83204 1.83981 1.18937 1.76021 1.31300 1.23883 0.82248 1.03251 0.97914 1.22528 0.97952 1.07235 0.92874 1.19681 0.92979 1.05185 0.93381 1.22327 0.93142 0.92854 0.98714 1.21643 1.00109 0.93080 0.99238 0.93081 0.96223 0.93192 0.92511 0.92451 0.95763 0.90444 0.94448 0.85589 0.84922 0.85434 0.77869 0.82400 0.96159 0.92254 0.89080 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 11.37 55.43 0.63 -25.13 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.21 8.57 -34.44 -0.29 -14.50 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 10 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 11 C 0.06 1.08 5.43 -3.83 -0.02 1.06 16 12 N -0.53 -9.50 4.80 -236.11 -1.13 -10.63 16 13 C 0.09 1.36 5.34 -4.97 -0.03 1.33 16 14 C -0.02 -0.31 3.71 -104.37 -0.39 -0.70 16 15 C -0.13 -1.81 8.64 -39.58 -0.34 -2.16 16 16 C -0.09 -1.09 10.01 -39.54 -0.40 -1.48 16 17 C -0.12 -1.46 10.06 -39.48 -0.40 -1.85 16 18 C 0.05 0.70 7.41 -38.49 -0.29 0.42 16 19 O -0.20 -2.77 10.58 3.83 0.04 -2.73 16 20 C -0.01 -0.10 11.96 29.24 0.35 0.25 16 21 C -0.19 -2.49 11.02 -37.62 -0.41 -2.90 16 22 C -0.11 -1.68 6.17 -105.16 -0.65 -2.33 16 23 C 0.06 1.15 4.81 -3.83 -0.02 1.14 16 24 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.90 8.12 -51.93 -0.42 0.47 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.53 7.94 -51.93 -0.41 0.12 16 33 H 0.13 1.54 8.04 -52.49 -0.42 1.12 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.20 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 1.19 6.03 -51.93 -0.31 0.88 16 40 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 41 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -30.50 330.22 -10.04 -40.54 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.08 Total: 0.54 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -3.45 Total: -24.10 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.50 Total: -35.76 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.50 -10.04 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236744197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.146 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds