Wall clock time and date at job start Tue Mar 31 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48491 * 109.47033 * 239.99883 * 3 2 1 5 5 H 1.48497 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46985 * 119.99567 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.51728 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.27589 * 182.37636 * 10 9 7 12 12 N 1.46847 * 109.51335 * 59.18419 * 11 10 9 13 13 C 1.46899 * 110.99862 * 174.15436 * 12 11 10 14 14 C 1.50705 * 109.46990 * 170.00184 * 13 12 11 15 15 C 1.37758 * 120.20063 * 260.00342 * 14 13 12 16 16 C 1.38720 * 120.27716 * 179.97438 * 15 14 13 17 17 C 1.37864 * 120.68862 * 359.97400 * 16 15 14 18 18 C 1.38881 * 119.95909 * 0.02562 * 17 16 15 19 19 O 1.34839 * 133.42098 * 179.97438 * 18 17 16 20 20 C 1.34446 * 110.89381 * 180.02562 * 19 18 17 21 21 C 1.33995 * 110.16150 * 0.02562 * 20 19 18 22 22 C 1.39385 * 120.19793 * 79.72182 * 14 13 12 23 23 C 1.46847 * 111.20163 * 298.24410 * 12 11 10 24 24 C 1.53041 * 109.51486 * 61.75514 * 23 12 11 25 25 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.52260 * 300.12099 * 9 7 2 27 27 H 1.09000 * 109.50507 * 62.44301 * 10 9 7 28 28 H 1.08999 * 109.54263 * 302.33234 * 10 9 7 29 29 H 1.09002 * 109.46396 * 179.19729 * 11 10 9 30 30 H 1.08994 * 109.46485 * 299.17654 * 11 10 9 31 31 H 1.09002 * 109.47485 * 289.99621 * 13 12 11 32 32 H 1.08997 * 109.47251 * 50.00559 * 13 12 11 33 33 H 1.08002 * 119.85993 * 359.95045 * 15 14 13 34 34 H 1.08002 * 119.65354 * 179.97438 * 16 15 14 35 35 H 1.08002 * 120.01687 * 180.02562 * 17 16 15 36 36 H 1.08001 * 124.91642 * 180.02562 * 20 19 18 37 37 H 1.08001 * 126.90154 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46836 * 301.74653 * 23 12 11 39 39 H 1.08995 * 109.45748 * 181.76188 * 23 12 11 40 40 H 1.08996 * 109.50341 * 180.87808 * 24 23 12 41 41 H 1.08996 * 109.50165 * 60.75338 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9852 -0.0594 12 7 0.6532 -5.0194 -1.2760 13 6 0.0068 -6.3285 -1.4380 14 6 -1.0109 -6.2524 -2.5469 15 6 -2.3484 -6.1065 -2.2510 16 6 -3.2865 -6.0357 -3.2705 17 6 -2.8975 -6.1094 -4.5910 18 6 -1.5541 -6.2565 -4.9111 19 8 -0.8848 -6.3557 -6.0774 20 6 0.4359 -6.4873 -5.8626 21 6 0.6928 -6.4810 -4.5475 22 6 -0.6040 -6.3233 -3.8781 23 6 -0.3407 -3.9383 -1.2761 24 6 0.3751 -2.5858 -1.2525 25 1 -0.4850 0.8401 0.0004 26 1 0.6219 -2.5566 0.8889 27 1 2.8426 -3.6321 0.9114 28 1 2.8994 -3.5846 -0.8674 29 1 2.1801 -5.8162 -0.0739 30 1 0.8312 -5.0704 0.8161 31 1 0.7593 -7.0770 -1.6864 32 1 -0.4892 -6.6064 -0.5081 33 1 -2.6680 -6.0473 -1.2211 34 1 -4.3326 -5.9217 -3.0271 35 1 -3.6371 -6.0527 -5.3761 36 1 1.1817 -6.5841 -6.6377 37 1 1.6600 -6.5699 -4.0752 38 1 -0.9757 -4.0285 -0.3948 39 1 -0.9539 -4.0090 -2.1744 40 1 -0.3629 -1.7838 -1.2369 41 1 0.9998 -2.4892 -2.1404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236744197.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:33 Heat of formation + Delta-G solvation = 9.583445 kcal Electronic energy + Delta-G solvation = -22489.400125 eV Core-core repulsion = 19334.427264 eV Total energy + Delta-G solvation = -3154.972861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29972 -40.21593 -38.60423 -35.86983 -34.05186 -33.11273 -31.59994 -31.21084 -30.30378 -28.10630 -26.02925 -23.98658 -23.68836 -23.33430 -22.82424 -21.20387 -20.32450 -18.45452 -18.17227 -17.96350 -17.11359 -16.79844 -16.54502 -16.28255 -15.77337 -15.50590 -14.89893 -14.59058 -14.53054 -14.28132 -14.08138 -13.66574 -13.48586 -13.33248 -13.18179 -12.85522 -12.72566 -12.69034 -12.49308 -12.31919 -12.03797 -11.88808 -11.70903 -11.33875 -11.01666 -10.79389 -10.65374 -10.37276 -9.53295 -9.22372 -8.95231 -8.07484 -6.20941 -0.01082 0.40962 1.40926 1.42558 1.49963 1.54566 1.96038 2.43895 2.66224 3.18524 3.22805 3.54066 3.79449 3.96353 4.15453 4.20922 4.23611 4.32316 4.33091 4.46968 4.49487 4.58524 4.62800 4.72592 4.79233 4.82563 4.90368 4.98341 5.02343 5.10144 5.23452 5.26822 5.33526 5.39083 5.52942 5.57319 5.61050 5.63491 5.73307 5.99775 6.02401 6.25678 6.27841 6.33819 6.40980 6.90680 7.46714 8.96982 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020327 B = 0.004282 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.127515 B = 6537.453495 C = 6670.337619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.045 3.955 10 C -0.098 4.098 11 C 0.066 3.934 12 N -0.532 5.532 13 C 0.096 3.904 14 C -0.045 4.045 15 C -0.141 4.141 16 C -0.092 4.092 17 C -0.116 4.116 18 C 0.021 3.979 19 O -0.210 6.210 20 C 0.005 3.995 21 C -0.215 4.215 22 C -0.131 4.131 23 C 0.077 3.923 24 C -0.092 4.092 25 H 0.260 0.740 26 H -0.011 1.011 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.024 0.976 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.135 0.865 34 H 0.164 0.836 35 H 0.151 0.849 36 H 0.247 0.753 37 H 0.165 0.835 38 H 0.014 0.986 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.432 -16.144 -8.494 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.136 4.136 11 C -0.062 4.062 12 N -0.257 5.257 13 C -0.030 4.030 14 C -0.046 4.046 15 C -0.160 4.160 16 C -0.110 4.110 17 C -0.135 4.135 18 C -0.026 4.026 19 O -0.112 6.112 20 C -0.058 4.058 21 C -0.234 4.234 22 C -0.133 4.133 23 C -0.051 4.051 24 C -0.131 4.131 25 H 0.069 0.931 26 H 0.007 0.993 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.042 0.958 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.153 0.847 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.263 0.737 37 H 0.183 0.817 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.387 -15.948 -9.124 18.683 hybrid contribution -0.026 1.168 0.942 1.501 sum -3.414 -14.779 -8.182 17.234 Atomic orbital electron populations 1.70017 1.07191 1.27070 1.51519 1.25748 0.95667 1.02365 0.94863 0.85700 0.78460 0.79224 0.78812 1.19811 1.20965 1.19523 1.21570 0.92997 0.92278 1.50361 0.93053 1.18650 0.93149 0.92751 0.92801 1.21533 0.97919 0.93938 1.00243 1.22086 0.96118 0.98463 0.89508 1.62076 1.23095 1.02238 1.38242 1.21078 0.95233 0.91682 0.95054 1.19341 0.94477 0.98415 0.92325 1.21234 0.92115 1.02012 1.00618 1.21214 1.01060 0.98184 0.90564 1.20234 0.90797 1.04434 0.98025 1.20021 0.94780 1.04353 0.83419 1.83983 1.19923 1.76074 1.31230 1.24696 0.81952 1.00618 0.98562 1.22740 0.97815 1.09132 0.93701 1.20018 0.94073 1.05392 0.93787 1.21959 0.92992 0.91677 0.98482 1.21393 0.99019 0.94680 0.97967 0.93131 0.99320 0.92583 0.93120 0.89044 0.95767 0.88895 0.93394 0.84703 0.81895 0.83139 0.73692 0.81744 0.96765 0.92073 0.92397 0.95800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.39 11.37 21.45 0.24 -54.15 16 2 C 0.01 0.68 5.31 84.66 0.45 1.13 16 3 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -30.32 8.57 25.60 0.22 -30.10 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.33 2.16 -11.46 -0.02 2.31 16 10 C -0.10 -4.14 5.32 30.65 0.16 -3.98 16 11 C 0.07 2.27 5.43 86.33 0.47 2.73 16 12 N -0.53 -18.66 4.80 -900.91 -4.32 -22.98 16 13 C 0.10 2.72 5.34 85.56 0.46 3.18 16 14 C -0.05 -1.30 3.71 -19.70 -0.07 -1.37 16 15 C -0.14 -3.63 8.64 22.27 0.19 -3.43 16 16 C -0.09 -2.05 10.01 22.30 0.22 -1.83 16 17 C -0.12 -2.77 10.06 22.33 0.22 -2.54 16 18 C 0.02 0.60 7.41 22.98 0.17 0.77 16 19 O -0.21 -5.53 10.58 -9.21 -0.10 -5.63 16 20 C 0.01 0.12 11.96 66.85 0.80 0.91 16 21 C -0.22 -5.48 11.02 23.54 0.26 -5.22 16 22 C -0.13 -3.87 6.17 -20.21 -0.12 -4.00 16 23 C 0.08 3.14 4.81 86.33 0.42 3.56 16 24 C -0.09 -4.63 5.12 30.65 0.16 -4.47 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.09 2.58 8.12 -2.39 -0.02 2.56 16 30 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.26 7.94 -2.39 -0.02 1.24 16 33 H 0.14 3.12 8.04 -2.91 -0.02 3.09 16 34 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.25 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16 38 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.06 2.48 6.03 -2.39 -0.01 2.47 16 40 H 0.06 3.27 6.17 -2.39 -0.01 3.26 16 41 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -67.31 330.22 2.83 -64.48 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.01 Total: 14.05 kcal Atomic # 6 Polarization: -46.34 SS G_CDS: 3.98 Total: -42.37 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -4.08 Total: -77.13 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.10 Total: -5.63 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.31 2.83 -64.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236744197.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.063 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds