Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99965 * 2 1 4 4 H 1.48503 * 109.46915 * 269.99986 * 3 2 1 5 5 H 1.48502 * 109.47320 * 29.99631 * 3 2 1 6 6 H 1.48499 * 109.47054 * 149.99996 * 3 2 1 7 7 C 1.37871 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00114 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.53517 * 114.16946 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.93086 * 220.14059 * 10 9 7 12 12 C 1.46898 * 111.00129 * 138.70294 * 11 10 9 13 13 C 1.50701 * 109.46877 * 169.99592 * 12 11 10 14 14 C 1.34620 * 125.88871 * 95.00172 * 13 12 11 15 15 N 1.37172 * 106.82768 * 179.97438 * 14 13 12 16 16 C 1.39830 * 126.48561 * 180.02562 * 15 14 13 17 17 C 1.39129 * 120.07104 * 184.99755 * 16 15 14 18 18 N 1.31991 * 119.91032 * 179.97438 * 17 16 15 19 19 C 1.32223 * 120.06601 * 0.02562 * 18 17 16 20 20 C 1.38255 * 120.15204 * 359.97438 * 19 18 17 21 21 N 1.32194 * 120.07925 * 359.76903 * 20 19 18 22 22 C 1.35919 * 107.02846 * 359.97438 * 15 14 13 23 23 N 1.30484 * 108.55436 * 359.97438 * 22 15 14 24 24 C 1.47478 * 87.83938 * 27.00810 * 11 10 9 25 25 H 0.97008 * 119.99748 * 0.02562 * 1 2 3 26 26 H 1.09002 * 113.25631 * 312.95006 * 9 7 2 27 27 H 1.08992 * 113.47468 * 105.37420 * 10 9 7 28 28 H 1.09004 * 113.53036 * 334.91243 * 10 9 7 29 29 H 1.09000 * 109.47182 * 49.99993 * 12 11 10 30 30 H 1.08994 * 109.47565 * 289.99397 * 12 11 10 31 31 H 1.07995 * 126.58651 * 359.96219 * 14 13 12 32 32 H 1.07994 * 120.04502 * 0.02562 * 17 16 15 33 33 H 1.08005 * 119.92550 * 179.97438 * 19 18 17 34 34 H 1.07990 * 119.96416 * 180.02562 * 20 19 18 35 35 H 1.08004 * 125.72292 * 180.26591 * 22 15 14 36 36 H 1.09006 * 113.47499 * 87.75924 * 24 11 10 37 37 H 1.08997 * 113.48142 * 218.22380 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0018 11 7 1.2057 -4.3605 -0.9488 12 6 1.9221 -5.0909 -2.0030 13 6 0.9404 -5.9050 -2.8059 14 6 0.3560 -5.5251 -3.9577 15 7 -0.4592 -6.5568 -4.3484 16 6 -1.2607 -6.5952 -5.4936 17 6 -2.1178 -7.6698 -5.7089 18 7 -2.8734 -7.7026 -6.7906 19 6 -2.8158 -6.7160 -7.6690 20 6 -1.9651 -5.6468 -7.4577 21 7 -1.2094 -5.6055 -6.3738 22 6 -0.3395 -7.5351 -3.4125 23 7 0.4997 -7.1339 -2.4974 24 6 0.8528 -2.9999 -1.3949 25 1 -0.4850 0.8401 -0.0004 26 1 0.4446 -2.5305 0.7332 27 1 2.1882 -4.2505 0.9660 28 1 3.1386 -3.5669 -0.4213 29 1 2.6586 -5.7541 -1.5493 30 1 2.4270 -4.3811 -2.6581 31 1 0.5010 -4.5881 -4.4746 32 1 -2.1654 -8.4757 -4.9915 33 1 -3.4348 -6.7453 -8.5536 34 1 -1.9208 -4.8424 -8.1769 35 1 -0.8495 -8.4870 -3.4265 36 1 1.4953 -2.6236 -2.1911 37 1 -0.2077 -2.8762 -1.6144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238811348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = 164.417327 kcal Electronic energy + Delta-G solvation = -21041.413095 eV Core-core repulsion = 17821.906743 eV Total energy + Delta-G solvation = -3219.506353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.58249 -41.15778 -38.76791 -35.34408 -34.20405 -32.73470 -31.06739 -30.63265 -28.34141 -25.96525 -25.14420 -24.69688 -24.56128 -22.43400 -21.62579 -20.09175 -18.70093 -18.53063 -17.68956 -17.25367 -16.55246 -16.16201 -15.53133 -14.93215 -14.61622 -14.55010 -14.25796 -14.06382 -13.83309 -13.61132 -13.29262 -12.50534 -12.14470 -12.01655 -11.85583 -11.62454 -11.16658 -10.95861 -10.86184 -10.62930 -10.30422 -9.99717 -9.76173 -9.70983 -9.26347 -9.14959 -8.90983 -8.44400 -8.31586 -7.90993 -6.02901 -4.07399 0.04486 0.51268 2.05101 2.13630 3.08649 3.26998 3.29797 3.36957 3.40174 3.65785 3.69198 3.76921 4.41905 4.45462 4.48294 4.54870 4.85711 4.91650 5.10235 5.25945 5.39605 5.47970 5.71826 5.89174 5.93292 5.95922 6.20778 6.39924 6.51906 6.61514 6.68923 6.74693 6.78783 7.03224 7.18993 7.21285 7.27093 7.76156 7.94343 7.99228 8.14801 8.40821 8.96101 9.57429 11.06632 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.003412 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.491023 B = 8203.282424 C = 9131.230422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.042 3.958 10 C -0.004 4.004 11 N -0.476 5.476 12 C 0.099 3.901 13 C 0.037 3.963 14 C -0.023 4.023 15 N -0.415 5.415 16 C 0.313 3.687 17 C 0.045 3.955 18 N -0.410 5.410 19 C 0.027 3.973 20 C 0.092 3.908 21 N -0.455 5.455 22 C 0.187 3.813 23 N -0.453 5.453 24 C 0.005 3.995 25 H 0.261 0.739 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.212 0.788 36 H 0.053 0.947 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -14.267 -15.868 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.023 3.977 10 C -0.132 4.132 11 N -0.199 5.199 12 C -0.031 4.031 13 C -0.088 4.088 14 C -0.152 4.152 15 N -0.100 5.100 16 C 0.081 3.919 17 C -0.119 4.119 18 N -0.124 5.124 19 C -0.133 4.133 20 C -0.069 4.069 21 N -0.173 5.173 22 C -0.094 4.094 23 N -0.170 5.170 24 C -0.124 4.124 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.198 0.802 32 H 0.194 0.806 33 H 0.195 0.805 34 H 0.198 0.802 35 H 0.229 0.771 36 H 0.071 0.929 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.550 -15.062 -14.966 21.715 hybrid contribution 0.721 1.923 -1.295 2.428 sum -3.829 -13.138 -16.262 21.254 Atomic orbital electron populations 1.69978 1.06004 1.26663 1.49727 1.25022 0.94804 0.99142 0.94670 0.86625 0.79960 0.83498 0.78096 1.20690 1.21185 1.19797 1.21045 0.92759 0.90261 1.51286 0.92379 1.20083 0.94304 0.90778 0.92560 1.24006 0.95698 0.97536 0.96005 1.68888 1.27248 1.13829 1.09885 1.20916 0.92689 0.95844 0.93611 1.20692 1.01669 0.92375 0.94080 1.22688 0.97856 0.94704 0.99928 1.43058 1.33390 1.16527 1.16998 1.19337 0.91818 0.92864 0.87877 1.23315 0.93423 0.97950 0.97205 1.68479 1.17724 1.25352 1.00820 1.23806 0.98938 0.90960 0.99614 1.23754 0.91019 0.98725 0.93429 1.67882 1.22046 1.24968 1.02401 1.25363 1.01957 0.95618 0.86494 1.70215 1.10669 1.12240 1.23832 1.24121 1.00076 0.86901 1.01294 0.92923 0.91855 0.91881 0.92735 0.90362 0.92679 0.80212 0.80636 0.80463 0.80203 0.77126 0.92873 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.26 55.43 0.74 -25.08 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.10 8.83 -34.44 -0.30 -14.41 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.04 1.07 3.76 -91.24 -0.34 0.72 16 10 C 0.00 -0.08 7.25 -7.54 -0.05 -0.14 16 11 N -0.48 -10.14 6.32 -246.07 -1.55 -11.70 16 12 C 0.10 1.79 5.35 -4.98 -0.03 1.77 16 13 C 0.04 0.64 6.67 -82.86 -0.55 0.09 16 14 C -0.02 -0.37 11.10 -16.44 -0.18 -0.55 16 15 N -0.41 -5.54 2.98 -63.71 -0.19 -5.73 16 16 C 0.31 3.60 7.50 -154.08 -1.16 2.45 16 17 C 0.04 0.41 10.65 -17.15 -0.18 0.22 16 18 N -0.41 -3.65 10.49 -12.91 -0.14 -3.78 16 19 C 0.03 0.18 11.21 -17.38 -0.19 -0.02 16 20 C 0.09 0.69 11.22 -17.39 -0.20 0.50 16 21 N -0.46 -5.22 10.06 -12.10 -0.12 -5.34 16 22 C 0.19 2.36 11.91 -89.58 -1.07 1.29 16 23 N -0.45 -7.51 11.24 -10.68 -0.12 -7.63 16 24 C 0.01 0.12 7.28 -7.54 -0.05 0.06 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 29 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 30 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 31 H 0.18 2.73 8.06 -52.49 -0.42 2.30 16 32 H 0.18 1.07 6.80 -52.49 -0.36 0.71 16 33 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.18 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.21 1.57 7.09 -52.48 -0.37 1.20 16 36 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 37 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -33.67 322.61 -10.36 -44.03 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.40 Total: 0.55 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -4.41 Total: -6.26 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -1.39 Total: -59.27 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.67 -10.36 -44.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238811348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.445 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds