Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99965 * 2 1 4 4 H 1.48503 * 109.46915 * 269.99986 * 3 2 1 5 5 H 1.48502 * 109.47320 * 29.99631 * 3 2 1 6 6 H 1.48499 * 109.47054 * 149.99996 * 3 2 1 7 7 C 1.37871 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00114 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.53517 * 114.16946 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.93086 * 220.14059 * 10 9 7 12 12 C 1.46898 * 111.00129 * 138.70294 * 11 10 9 13 13 C 1.50701 * 109.46877 * 169.99592 * 12 11 10 14 14 C 1.34620 * 125.88871 * 95.00172 * 13 12 11 15 15 N 1.37172 * 106.82768 * 179.97438 * 14 13 12 16 16 C 1.39830 * 126.48561 * 180.02562 * 15 14 13 17 17 C 1.39129 * 120.07104 * 184.99755 * 16 15 14 18 18 N 1.31991 * 119.91032 * 179.97438 * 17 16 15 19 19 C 1.32223 * 120.06601 * 0.02562 * 18 17 16 20 20 C 1.38255 * 120.15204 * 359.97438 * 19 18 17 21 21 N 1.32194 * 120.07925 * 359.76903 * 20 19 18 22 22 C 1.35919 * 107.02846 * 359.97438 * 15 14 13 23 23 N 1.30484 * 108.55436 * 359.97438 * 22 15 14 24 24 C 1.47478 * 87.83938 * 27.00810 * 11 10 9 25 25 H 0.97008 * 119.99748 * 0.02562 * 1 2 3 26 26 H 1.09002 * 113.25631 * 312.95006 * 9 7 2 27 27 H 1.08992 * 113.47468 * 105.37420 * 10 9 7 28 28 H 1.09004 * 113.53036 * 334.91243 * 10 9 7 29 29 H 1.09000 * 109.47182 * 49.99993 * 12 11 10 30 30 H 1.08994 * 109.47565 * 289.99397 * 12 11 10 31 31 H 1.07995 * 126.58651 * 359.96219 * 14 13 12 32 32 H 1.07994 * 120.04502 * 0.02562 * 17 16 15 33 33 H 1.08005 * 119.92550 * 179.97438 * 19 18 17 34 34 H 1.07990 * 119.96416 * 180.02562 * 20 19 18 35 35 H 1.08004 * 125.72292 * 180.26591 * 22 15 14 36 36 H 1.09006 * 113.47499 * 87.75924 * 24 11 10 37 37 H 1.08997 * 113.48142 * 218.22380 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0018 11 7 1.2057 -4.3605 -0.9488 12 6 1.9221 -5.0909 -2.0030 13 6 0.9404 -5.9050 -2.8059 14 6 0.3560 -5.5251 -3.9577 15 7 -0.4592 -6.5568 -4.3484 16 6 -1.2607 -6.5952 -5.4936 17 6 -2.1178 -7.6698 -5.7089 18 7 -2.8734 -7.7026 -6.7906 19 6 -2.8158 -6.7160 -7.6690 20 6 -1.9651 -5.6468 -7.4577 21 7 -1.2094 -5.6055 -6.3738 22 6 -0.3395 -7.5351 -3.4125 23 7 0.4997 -7.1339 -2.4974 24 6 0.8528 -2.9999 -1.3949 25 1 -0.4850 0.8401 -0.0004 26 1 0.4446 -2.5305 0.7332 27 1 2.1882 -4.2505 0.9660 28 1 3.1386 -3.5669 -0.4213 29 1 2.6586 -5.7541 -1.5493 30 1 2.4270 -4.3811 -2.6581 31 1 0.5010 -4.5881 -4.4746 32 1 -2.1654 -8.4757 -4.9915 33 1 -3.4348 -6.7453 -8.5536 34 1 -1.9208 -4.8424 -8.1769 35 1 -0.8495 -8.4870 -3.4265 36 1 1.4953 -2.6236 -2.1911 37 1 -0.2077 -2.8762 -1.6144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238811348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = 141.344149 kcal Electronic energy + Delta-G solvation = -21042.413623 eV Core-core repulsion = 17821.906743 eV Total energy + Delta-G solvation = -3220.506881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.55976 -41.92067 -40.54972 -36.18197 -35.10776 -34.65910 -32.49731 -31.47522 -29.79923 -27.56739 -26.53495 -25.85787 -25.65023 -24.05426 -22.56903 -21.23671 -20.46435 -19.62809 -18.66160 -18.33846 -17.85211 -17.12876 -16.68336 -16.47566 -16.10612 -15.81692 -15.55069 -15.25318 -15.13192 -14.87372 -14.18099 -13.88057 -13.87505 -13.35980 -13.06908 -12.83833 -12.82462 -12.70252 -12.41178 -12.11660 -11.81404 -11.63282 -11.20228 -11.13072 -10.88230 -10.50214 -10.40042 -10.02213 -9.70929 -9.44725 -8.14324 -6.26201 -0.65674 -0.14155 1.07154 1.26831 1.43323 1.44217 1.55187 1.92263 2.43445 2.58973 2.95671 3.06533 3.14596 3.16426 3.40617 3.48911 3.78119 3.94469 4.08152 4.16416 4.26746 4.34522 4.38853 4.45949 4.56544 4.64261 4.78699 4.87556 4.88425 4.96738 5.15311 5.21841 5.45464 5.53347 5.63179 5.84880 5.87040 6.23348 6.29754 6.39708 6.54231 6.83649 6.90290 7.42499 8.95619 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.003412 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.491023 B = 8203.282424 C = 9131.230422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.023 3.977 10 C 0.011 3.989 11 N -0.480 5.480 12 C 0.103 3.897 13 C 0.012 3.988 14 C -0.032 4.032 15 N -0.414 5.414 16 C 0.277 3.723 17 C 0.052 3.948 18 N -0.428 5.428 19 C 0.046 3.954 20 C 0.087 3.913 21 N -0.489 5.489 22 C 0.206 3.794 23 N -0.495 5.495 24 C 0.022 3.978 25 H 0.262 0.738 26 H 0.026 0.974 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.175 0.825 32 H 0.202 0.798 33 H 0.219 0.781 34 H 0.213 0.787 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 -15.207 -17.845 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.004 3.996 10 C -0.117 4.117 11 N -0.203 5.203 12 C -0.027 4.027 13 C -0.114 4.114 14 C -0.163 4.163 15 N -0.097 5.097 16 C 0.047 3.953 17 C -0.110 4.110 18 N -0.142 5.142 19 C -0.114 4.114 20 C -0.074 4.074 21 N -0.207 5.207 22 C -0.075 4.075 23 N -0.213 5.213 24 C -0.108 4.108 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.192 0.808 32 H 0.219 0.781 33 H 0.236 0.764 34 H 0.230 0.770 35 H 0.276 0.724 36 H 0.074 0.926 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.716 -16.030 -16.953 23.804 hybrid contribution 0.634 2.134 -0.858 2.386 sum -4.082 -13.896 -17.812 22.957 Atomic orbital electron populations 1.70118 1.07679 1.27551 1.50944 1.25871 0.95594 1.02858 0.94294 0.85526 0.78764 0.78834 0.78357 1.19923 1.21056 1.18783 1.21383 0.93133 0.91239 1.50934 0.91884 1.20015 0.94449 0.92219 0.92910 1.23845 0.95602 0.95444 0.96830 1.68820 1.28000 1.12605 1.10858 1.20864 0.93024 0.95828 0.92935 1.20544 1.02748 0.93230 0.94832 1.22583 0.98562 0.95347 0.99765 1.43102 1.33044 1.15807 1.17777 1.19531 0.93336 0.94420 0.87965 1.23673 0.92129 0.97554 0.97608 1.68609 1.18027 1.26269 1.01260 1.24522 0.97685 0.89427 0.99777 1.24389 0.90251 0.99973 0.92771 1.67805 1.23467 1.25772 1.03664 1.26252 1.00019 0.96409 0.84819 1.70154 1.12845 1.12296 1.25959 1.23820 0.98526 0.88377 1.00046 0.92913 0.95564 0.90939 0.91341 0.89544 0.92085 0.80763 0.78089 0.76433 0.77040 0.72375 0.92631 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.27 13.26 21.44 0.28 -54.99 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.53 -29.34 8.83 25.60 0.23 -29.11 16 8 H 0.06 3.36 7.81 -2.91 -0.02 3.33 16 9 C 0.02 1.22 3.76 -11.19 -0.04 1.18 16 10 C 0.01 0.49 7.25 83.58 0.61 1.10 16 11 N -0.48 -20.84 6.32 -932.44 -5.89 -26.73 16 12 C 0.10 3.75 5.35 85.56 0.46 4.21 16 13 C 0.01 0.41 6.67 41.38 0.28 0.69 16 14 C -0.03 -1.04 11.10 83.03 0.92 -0.12 16 15 N -0.41 -10.82 2.98 -355.48 -1.06 -11.88 16 16 C 0.28 6.07 7.50 132.73 1.00 7.06 16 17 C 0.05 0.83 10.65 84.88 0.90 1.73 16 18 N -0.43 -6.38 10.49 -194.75 -2.04 -8.42 16 19 C 0.05 0.46 11.21 84.64 0.95 1.41 16 20 C 0.09 1.11 11.22 84.64 0.95 2.06 16 21 N -0.49 -10.75 10.06 -192.18 -1.93 -12.68 16 22 C 0.21 4.93 11.91 179.99 2.14 7.08 16 23 N -0.50 -16.26 11.24 -187.69 -2.11 -18.37 16 24 C 0.02 1.05 7.28 83.58 0.61 1.66 16 25 H 0.26 14.82 8.31 -92.70 -0.77 14.04 16 26 H 0.03 1.56 8.11 -2.39 -0.02 1.54 16 27 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.07 2.78 7.87 -2.38 -0.02 2.76 16 29 H 0.09 2.97 8.08 -2.39 -0.02 2.95 16 30 H 0.06 2.12 7.30 -2.39 -0.02 2.10 16 31 H 0.18 5.56 8.06 -2.91 -0.02 5.53 16 32 H 0.20 1.82 6.80 -2.91 -0.02 1.80 16 33 H 0.22 0.27 8.06 -2.91 -0.02 0.24 16 34 H 0.21 1.07 8.06 -2.92 -0.02 1.04 16 35 H 0.26 3.04 7.09 -2.91 -0.02 3.02 16 36 H 0.06 2.63 7.38 -2.38 -0.02 2.61 16 37 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.47 322.61 -0.18 -75.65 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.09 Total: 11.74 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 9.46 Total: 0.13 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -12.75 Total: -133.07 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -75.47 -0.18 -75.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238811348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.994 kcal (2) G-P(sol) polarization free energy of solvation -75.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds