Wall clock time and date at job start Tue Mar 31 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35531 * 116.99879 * 2 1 4 4 C 1.39117 * 120.48408 * 0.02562 * 3 2 1 5 5 C 1.38318 * 118.63731 * 179.97438 * 4 3 2 6 6 C 1.40075 * 119.57200 * 0.25779 * 5 4 3 7 7 C 1.48262 * 119.51569 * 179.72067 * 6 5 4 8 8 C 1.39418 * 120.54874 * 359.94635 * 7 6 5 9 9 N 1.31700 * 120.59060 * 180.02562 * 8 7 6 10 10 C 1.31936 * 121.85518 * 359.97438 * 9 8 7 11 11 C 1.38288 * 121.04814 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.35317 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47446 * 90.00200 * 12 11 10 14 14 C 1.38438 * 119.29228 * 359.74619 * 11 10 9 15 15 N 1.32171 * 120.96437 * 359.49070 * 6 5 4 16 16 C 1.33569 * 121.46099 * 0.49071 * 15 6 5 17 17 C 1.41008 * 119.83524 * 179.75169 * 16 15 6 18 18 H 1.08001 * 119.99962 * 173.56460 * 17 16 15 19 19 C 1.40026 * 119.99718 * 353.56860 * 17 16 15 20 20 N 1.30777 * 120.00018 * 6.26938 * 19 17 16 21 21 Si 1.86799 * 119.99998 * 186.27761 * 19 17 16 22 22 H 1.48496 * 109.47428 * 94.97871 * 21 19 17 23 23 H 1.48502 * 109.46926 * 214.98243 * 21 19 17 24 24 H 1.48504 * 109.46666 * 334.98161 * 21 19 17 25 25 H 1.09001 * 109.46891 * 299.99455 * 1 2 3 26 26 H 1.08990 * 109.46991 * 60.00099 * 1 2 3 27 27 H 1.09006 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.68071 * 359.95510 * 4 3 2 29 29 H 1.08002 * 120.21721 * 179.97438 * 5 4 3 30 30 H 1.08010 * 119.70714 * 0.02562 * 8 7 6 31 31 H 1.08004 * 119.47466 * 180.02562 * 10 9 8 32 32 H 1.09010 * 109.46880 * 210.00388 * 12 11 10 33 33 H 1.08998 * 109.47266 * 329.99853 * 12 11 10 34 34 H 1.00899 * 110.99955 * 56.04439 * 13 12 11 35 35 H 1.00896 * 111.00413 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.84502 * 180.25012 * 14 11 10 37 37 H 0.97000 * 119.99947 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2965 2.3807 0.0005 5 6 1.9638 3.5922 0.0011 6 6 3.3645 3.6100 -0.0044 7 6 4.0785 4.9094 -0.0102 8 6 3.3675 6.1086 -0.0112 9 7 4.0008 7.2633 -0.0168 10 6 5.3183 7.3348 -0.0211 11 6 6.0947 6.1905 -0.0193 12 6 7.5984 6.2905 -0.0237 13 7 8.0907 6.3275 1.3598 14 6 5.4759 4.9522 -0.0076 15 7 4.0588 2.4854 -0.0001 16 6 3.4557 1.2937 0.0000 17 6 4.2302 0.1154 -0.0006 18 1 3.7502 -0.8464 0.1043 19 6 5.6217 0.1923 -0.1370 20 7 6.2149 1.3578 -0.1406 21 14 6.6306 -1.3698 -0.3140 22 1 6.8599 -1.6505 -1.7541 23 1 7.9369 -1.1956 0.3705 24 1 5.8970 -2.5051 0.3008 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2171 2.3461 0.0002 29 1 1.4086 4.5186 0.0011 30 1 2.2875 6.0906 -0.0074 31 1 5.7979 8.3025 -0.0252 32 1 8.0185 5.4248 -0.5359 33 1 7.9005 7.2008 -0.5414 34 1 7.7693 5.5247 1.8796 35 1 9.0971 6.3949 1.3838 36 1 6.0579 4.0424 -0.0020 37 1 7.1788 1.4111 -0.2355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239790754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:28 Heat of formation + Delta-G solvation = 29.346217 kcal Electronic energy + Delta-G solvation = -21723.293226 eV Core-core repulsion = 18465.637000 eV Total energy + Delta-G solvation = -3257.656226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80443 -38.86339 -36.79345 -34.99095 -33.86662 -32.05293 -30.89871 -30.35032 -28.84650 -26.65458 -25.80740 -24.99687 -23.07201 -22.06658 -21.20698 -20.00072 -17.64381 -16.93067 -16.51340 -16.23368 -15.65351 -15.55962 -14.85040 -14.77127 -14.59303 -14.27539 -13.39209 -13.27994 -13.15970 -12.92708 -12.64456 -12.34549 -12.29410 -12.21016 -11.76227 -11.36604 -11.31039 -10.91401 -10.69922 -10.60843 -10.58347 -9.98577 -9.59605 -9.16209 -9.02349 -8.68228 -8.49898 -8.25639 -7.89489 -7.02712 -6.57936 -4.51258 1.35011 1.80555 2.66545 2.89816 3.03782 3.08395 3.12529 3.88220 4.26090 4.31073 4.69535 4.81212 4.91523 5.09076 5.23696 5.47103 5.52792 5.62061 5.63377 5.66776 5.77122 5.79210 5.83043 5.92775 6.09989 6.16413 6.26036 6.54339 6.64329 6.79913 7.00216 7.08110 7.13444 7.19502 7.31999 7.42468 7.49283 7.74077 8.08532 8.19038 8.44564 8.59254 8.87610 9.85832 10.17430 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.006454 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.362317 B = 4337.666009 C = 6379.739775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.021 4.021 4 C -0.148 4.148 5 C -0.265 4.265 6 C 0.149 3.851 7 C -0.059 4.059 8 C 0.098 3.902 9 N -0.493 5.493 10 C 0.099 3.901 11 C -0.150 4.150 12 C 0.110 3.890 13 N -0.847 5.847 14 C -0.037 4.037 15 N -0.451 5.451 16 C 0.253 3.747 17 C -0.411 4.411 18 H 0.092 0.908 19 C 0.069 3.931 20 N -0.721 5.721 21 Si 0.910 3.090 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.260 1.260 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.346 0.654 35 H 0.339 0.661 36 H 0.160 0.840 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 3.680 -0.142 3.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.221 6.221 3 C -0.070 4.070 4 C -0.172 4.172 5 C -0.289 4.289 6 C 0.008 3.992 7 C -0.062 4.062 8 C -0.060 4.060 9 N -0.201 5.201 10 C -0.059 4.059 11 C -0.153 4.153 12 C -0.021 4.021 13 N -0.377 5.377 14 C -0.064 4.064 15 N -0.166 5.166 16 C 0.125 3.875 17 C -0.443 4.443 18 H 0.110 0.890 19 C -0.155 4.155 20 N -0.343 5.343 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.184 1.184 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.853 5.039 -0.092 5.111 hybrid contribution 0.071 -2.154 -0.358 2.185 sum 0.924 2.885 -0.450 3.062 Atomic orbital electron populations 1.22783 0.81498 1.02032 1.00048 1.85947 1.18492 1.27767 1.89886 1.20377 0.93695 0.83300 1.09618 1.20880 0.97926 0.92514 1.05892 1.20991 0.94026 0.96426 1.17448 1.19472 0.89414 0.91717 0.98645 1.19750 0.93658 0.93226 0.99569 1.22864 1.00192 0.86907 0.96074 1.67626 1.10450 1.28747 1.13271 1.22455 0.89254 0.97694 0.96466 1.20708 0.96268 0.94298 1.03977 1.20541 0.90594 1.00899 0.90023 1.58763 1.15520 1.50055 1.13358 1.22038 0.94495 0.98105 0.91766 1.68823 1.34856 0.95289 1.17595 1.18104 0.85043 0.91976 0.92356 1.19539 0.91009 0.93166 1.40601 0.88999 1.26039 0.98547 0.97364 0.93589 1.70089 1.10159 1.24846 1.29195 0.86254 0.78989 0.82059 0.79237 1.19472 1.20166 1.18362 0.94067 0.94056 0.89757 0.87565 0.88012 0.82936 0.83673 0.94271 0.90466 0.84137 0.84881 0.82255 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.83 101.05 0.99 1.52 16 2 O -0.31 -6.79 9.62 -18.29 -0.18 -6.97 16 3 C -0.02 -0.51 6.74 -38.06 -0.26 -0.77 16 4 C -0.15 -3.22 9.11 -39.23 -0.36 -3.58 16 5 C -0.27 -5.78 9.47 -38.86 -0.37 -6.15 16 6 C 0.15 3.52 6.74 -82.91 -0.56 2.96 16 7 C -0.06 -1.24 5.89 -104.75 -0.62 -1.86 16 8 C 0.10 1.84 10.59 -17.17 -0.18 1.66 16 9 N -0.49 -8.95 10.35 -12.95 -0.13 -9.09 16 10 C 0.10 1.63 10.85 -17.49 -0.19 1.44 16 11 C -0.15 -2.49 5.41 -104.53 -0.56 -3.06 16 12 C 0.11 1.47 6.93 -4.98 -0.03 1.44 16 13 N -0.85 -10.57 9.61 -11.41 -0.11 -10.68 16 14 C -0.04 -0.74 9.37 -38.92 -0.36 -1.10 16 15 N -0.45 -11.74 7.00 -7.57 -0.05 -11.80 16 16 C 0.25 6.73 6.56 -84.86 -0.56 6.17 16 17 C -0.41 -10.72 8.93 -37.86 -0.34 -11.06 16 18 H 0.09 2.34 7.34 -52.49 -0.39 1.95 16 19 C 0.07 1.68 5.49 -17.33 -0.10 1.58 16 20 N -0.72 -17.68 11.24 55.55 0.62 -17.06 16 21 Si 0.91 18.04 29.56 -169.99 -5.03 13.02 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 25 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.96 6.43 -52.49 -0.34 1.63 16 29 H 0.10 1.92 6.19 -52.49 -0.32 1.59 16 30 H 0.15 2.58 6.18 -52.48 -0.32 2.26 16 31 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 32 H 0.04 0.53 8.10 -51.92 -0.42 0.11 16 33 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.35 4.60 8.99 -39.29 -0.35 4.25 16 35 H 0.34 3.34 9.08 -39.29 -0.36 2.98 16 36 H 0.16 3.44 7.38 -52.49 -0.39 3.05 16 37 H 0.27 6.00 8.29 -40.82 -0.34 5.66 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -28.89 318.24 -7.66 -36.54 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -4.09 Total: 12.04 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.49 Total: -10.81 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.33 Total: -48.62 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.18 Total: -6.97 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.89 -7.66 -36.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239790754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.887 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds