Wall clock time and date at job start Tue Mar 31 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35531 * 116.99879 * 2 1 4 4 C 1.39117 * 120.48408 * 0.02562 * 3 2 1 5 5 C 1.38318 * 118.63731 * 179.97438 * 4 3 2 6 6 C 1.40075 * 119.57200 * 0.25779 * 5 4 3 7 7 C 1.48262 * 119.51569 * 179.72067 * 6 5 4 8 8 C 1.39418 * 120.54874 * 359.94635 * 7 6 5 9 9 N 1.31700 * 120.59060 * 180.02562 * 8 7 6 10 10 C 1.31936 * 121.85518 * 359.97438 * 9 8 7 11 11 C 1.38288 * 121.04814 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.35317 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47446 * 90.00200 * 12 11 10 14 14 C 1.38438 * 119.29228 * 359.74619 * 11 10 9 15 15 N 1.32171 * 120.96437 * 359.49070 * 6 5 4 16 16 C 1.33569 * 121.46099 * 0.49071 * 15 6 5 17 17 C 1.41008 * 119.83524 * 179.75169 * 16 15 6 18 18 H 1.08001 * 119.99962 * 173.56460 * 17 16 15 19 19 C 1.40026 * 119.99718 * 353.56860 * 17 16 15 20 20 N 1.30777 * 120.00018 * 6.26938 * 19 17 16 21 21 Si 1.86799 * 119.99998 * 186.27761 * 19 17 16 22 22 H 1.48496 * 109.47428 * 94.97871 * 21 19 17 23 23 H 1.48502 * 109.46926 * 214.98243 * 21 19 17 24 24 H 1.48504 * 109.46666 * 334.98161 * 21 19 17 25 25 H 1.09001 * 109.46891 * 299.99455 * 1 2 3 26 26 H 1.08990 * 109.46991 * 60.00099 * 1 2 3 27 27 H 1.09006 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.68071 * 359.95510 * 4 3 2 29 29 H 1.08002 * 120.21721 * 179.97438 * 5 4 3 30 30 H 1.08010 * 119.70714 * 0.02562 * 8 7 6 31 31 H 1.08004 * 119.47466 * 180.02562 * 10 9 8 32 32 H 1.09010 * 109.46880 * 210.00388 * 12 11 10 33 33 H 1.08998 * 109.47266 * 329.99853 * 12 11 10 34 34 H 1.00899 * 110.99955 * 56.04439 * 13 12 11 35 35 H 1.00896 * 111.00413 * 180.02562 * 13 12 11 36 36 H 1.08001 * 120.84502 * 180.25012 * 14 11 10 37 37 H 0.97000 * 119.99947 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2965 2.3807 0.0005 5 6 1.9638 3.5922 0.0011 6 6 3.3645 3.6100 -0.0044 7 6 4.0785 4.9094 -0.0102 8 6 3.3675 6.1086 -0.0112 9 7 4.0008 7.2633 -0.0168 10 6 5.3183 7.3348 -0.0211 11 6 6.0947 6.1905 -0.0193 12 6 7.5984 6.2905 -0.0237 13 7 8.0907 6.3275 1.3598 14 6 5.4759 4.9522 -0.0076 15 7 4.0588 2.4854 -0.0001 16 6 3.4557 1.2937 0.0000 17 6 4.2302 0.1154 -0.0006 18 1 3.7502 -0.8464 0.1043 19 6 5.6217 0.1923 -0.1370 20 7 6.2149 1.3578 -0.1406 21 14 6.6306 -1.3698 -0.3140 22 1 6.8599 -1.6505 -1.7541 23 1 7.9369 -1.1956 0.3705 24 1 5.8970 -2.5051 0.3008 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.2171 2.3461 0.0002 29 1 1.4086 4.5186 0.0011 30 1 2.2875 6.0906 -0.0074 31 1 5.7979 8.3025 -0.0252 32 1 8.0185 5.4248 -0.5359 33 1 7.9005 7.2008 -0.5414 34 1 7.7693 5.5247 1.8796 35 1 9.0971 6.3949 1.3838 36 1 6.0579 4.0424 -0.0020 37 1 7.1788 1.4111 -0.2355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239790754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:28 Heat of formation + Delta-G solvation = 9.529051 kcal Electronic energy + Delta-G solvation = -21724.152563 eV Core-core repulsion = 18465.637000 eV Total energy + Delta-G solvation = -3258.515563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29414 -40.49287 -38.44670 -36.17878 -35.61198 -33.60779 -32.49002 -31.83987 -30.48396 -28.11426 -27.49272 -26.25129 -24.61899 -23.61524 -22.83154 -21.53496 -19.41077 -18.55641 -17.95189 -17.67227 -17.16098 -16.95633 -16.36128 -16.28363 -16.09645 -15.50579 -14.89498 -14.78884 -14.68750 -14.24987 -14.21912 -13.93108 -13.79764 -13.45640 -13.27352 -12.98376 -12.91278 -12.57291 -12.19857 -12.12510 -12.09862 -11.65674 -11.32455 -10.64291 -10.44986 -10.10191 -10.03111 -9.68461 -9.60674 -8.75465 -8.34770 -6.38389 -0.14623 0.34541 0.92818 1.20510 1.40177 1.52117 1.53366 2.23075 2.71568 2.80306 3.02806 3.46857 3.72911 3.79147 3.87465 3.96080 4.10796 4.14847 4.23317 4.27318 4.34428 4.47033 4.52106 4.66173 4.72798 4.78556 4.87718 4.92216 4.96385 5.27778 5.37618 5.43355 5.56066 5.63807 5.82629 6.04503 6.11597 6.28424 6.36656 6.56716 6.78640 7.02251 7.11283 8.05452 8.42322 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.006454 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.362317 B = 4337.666009 C = 6379.739775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.333 6.333 3 C -0.039 4.039 4 C -0.147 4.147 5 C -0.262 4.262 6 C 0.126 3.874 7 C -0.087 4.087 8 C 0.101 3.899 9 N -0.498 5.498 10 C 0.105 3.895 11 C -0.141 4.141 12 C 0.113 3.887 13 N -0.847 5.847 14 C -0.052 4.052 15 N -0.475 5.475 16 C 0.215 3.785 17 C -0.450 4.450 18 H 0.083 0.917 19 C 0.028 3.972 20 N -0.748 5.748 21 Si 0.982 3.018 22 H -0.266 1.266 23 H -0.265 1.265 24 H -0.260 1.260 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.114 0.886 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.170 0.830 31 H 0.181 0.819 32 H 0.034 0.966 33 H 0.105 0.895 34 H 0.339 0.661 35 H 0.355 0.645 36 H 0.135 0.865 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 5.046 -0.240 5.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.246 6.246 3 C -0.088 4.088 4 C -0.171 4.171 5 C -0.285 4.285 6 C -0.015 4.015 7 C -0.090 4.090 8 C -0.057 4.057 9 N -0.206 5.206 10 C -0.052 4.052 11 C -0.144 4.144 12 C -0.017 4.017 13 N -0.378 5.378 14 C -0.079 4.079 15 N -0.190 5.190 16 C 0.087 3.913 17 C -0.482 4.482 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.370 5.370 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.189 1.189 24 H -0.184 1.184 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.132 0.868 28 H 0.159 0.841 29 H 0.152 0.848 30 H 0.187 0.813 31 H 0.198 0.802 32 H 0.053 0.947 33 H 0.123 0.877 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.152 0.848 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.761 6.429 -0.187 6.477 hybrid contribution 0.000 -2.440 -0.315 2.460 sum 0.761 3.989 -0.502 4.092 Atomic orbital electron populations 1.23140 0.78395 1.04494 1.01084 1.85891 1.21713 1.27138 1.89898 1.20438 0.93464 0.84800 1.10066 1.21266 0.99645 0.91631 1.04510 1.21415 0.93718 0.97883 1.15511 1.20022 0.90705 0.92206 0.98596 1.19806 0.94277 0.92918 1.01951 1.23014 1.00914 0.86254 0.95515 1.67719 1.11339 1.28086 1.13481 1.23046 0.88790 0.98977 0.94421 1.20967 0.98136 0.92989 1.02260 1.20577 0.88319 1.02084 0.90756 1.58758 1.16903 1.49578 1.12562 1.21951 0.94296 0.98654 0.93022 1.68766 1.36076 0.95860 1.18308 1.18548 0.86844 0.92526 0.93406 1.19694 0.92352 0.92944 1.43210 0.89840 1.26825 0.98938 1.00630 0.92935 1.70164 1.10728 1.26560 1.29568 0.85189 0.77484 0.77843 0.79179 1.19106 1.18934 1.18396 0.92891 0.92882 0.86784 0.84052 0.84814 0.81326 0.80166 0.94748 0.87724 0.84891 0.83026 0.84755 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.83 113.37 1.11 1.84 16 2 O -0.33 -14.85 9.62 -88.35 -0.85 -15.70 16 3 C -0.04 -1.92 6.74 23.26 0.16 -1.77 16 4 C -0.15 -6.27 9.11 22.50 0.21 -6.06 16 5 C -0.26 -11.29 9.47 22.73 0.22 -11.07 16 6 C 0.13 6.07 6.74 42.21 0.28 6.36 16 7 C -0.09 -3.67 5.89 -19.95 -0.12 -3.79 16 8 C 0.10 3.67 10.59 85.00 0.90 4.57 16 9 N -0.50 -17.01 10.35 -194.87 -2.02 -19.03 16 10 C 0.11 3.19 10.85 84.69 0.92 4.11 16 11 C -0.14 -4.52 5.41 -19.80 -0.11 -4.62 16 12 C 0.11 2.82 6.93 85.56 0.59 3.41 16 13 N -0.85 -19.64 9.61 -190.01 -1.83 -21.46 16 14 C -0.05 -2.11 9.37 22.70 0.21 -1.90 16 15 N -0.48 -25.90 7.00 -177.85 -1.25 -27.15 16 16 C 0.22 11.98 6.56 40.33 0.26 12.24 16 17 C -0.45 -24.71 8.93 23.38 0.21 -24.51 16 18 H 0.08 4.51 7.34 -2.91 -0.02 4.49 16 19 C 0.03 1.43 5.49 85.28 0.47 1.90 16 20 N -0.75 -38.36 11.24 21.84 0.25 -38.12 16 21 Si 0.98 38.13 29.56 68.60 2.03 40.16 16 22 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 24 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 25 H 0.05 1.47 7.69 -2.39 -0.02 1.46 16 26 H 0.05 1.48 7.69 -2.39 -0.02 1.46 16 27 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 28 H 0.14 4.89 6.43 -2.91 -0.02 4.87 16 29 H 0.13 4.75 6.19 -2.91 -0.02 4.73 16 30 H 0.17 5.39 6.18 -2.91 -0.02 5.37 16 31 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 32 H 0.03 0.90 8.10 -2.38 -0.02 0.88 16 33 H 0.10 2.05 8.09 -2.39 -0.02 2.03 16 34 H 0.34 8.81 8.99 -89.69 -0.81 8.01 16 35 H 0.36 6.25 9.08 -89.70 -0.81 5.44 16 36 H 0.13 6.12 7.38 -2.91 -0.02 6.09 16 37 H 0.28 12.79 8.29 -92.71 -0.77 12.02 16 Total: -1.00 -65.63 318.24 1.17 -64.46 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.48 Total: 36.13 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 5.32 Total: -19.30 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -4.84 Total: -105.75 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.85 Total: -15.70 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -65.63 1.17 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239790754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.988 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds