Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35550 * 117.00516 * 2 1 4 4 C 1.39148 * 120.47901 * 359.97438 * 3 2 1 5 5 C 1.38295 * 118.64411 * 179.77090 * 4 3 2 6 6 C 1.40131 * 119.57252 * 0.49824 * 5 4 3 7 7 C 1.48230 * 119.52087 * 179.76875 * 6 5 4 8 8 C 1.40960 * 126.25684 * 4.70326 * 7 6 5 9 9 N 1.30615 * 108.07459 * 180.02562 * 8 7 6 10 10 N 1.40005 * 108.57240 * 359.97438 * 9 8 7 11 11 C 1.46497 * 125.86715 * 179.73692 * 10 9 8 12 12 C 1.53003 * 117.49993 * 163.64508 * 11 10 9 13 13 C 1.53004 * 60.00146 * 252.50994 * 12 11 10 14 14 C 1.34696 * 108.26353 * 0.02562 * 10 9 8 15 15 N 1.32180 * 120.95585 * 359.48907 * 6 5 4 16 16 C 1.33641 * 121.44952 * 0.25626 * 15 6 5 17 17 C 1.40966 * 119.83038 * 180.02562 * 16 15 6 18 18 H 1.07993 * 120.00210 * 180.02562 * 17 16 15 19 19 C 1.40018 * 119.99700 * 359.97438 * 17 16 15 20 20 N 1.30774 * 120.00303 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99710 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46953 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46860 * 120.00343 * 21 19 17 24 24 H 1.48499 * 109.46981 * 240.00580 * 21 19 17 25 25 H 1.09006 * 109.46854 * 300.00212 * 1 2 3 26 26 H 1.08995 * 109.47544 * 59.99356 * 1 2 3 27 27 H 1.08997 * 109.47750 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.67249 * 0.02562 * 4 3 2 29 29 H 1.07996 * 120.21245 * 180.26788 * 5 4 3 30 30 H 1.08000 * 125.95885 * 359.97438 * 8 7 6 31 31 H 1.09006 * 115.55319 * 309.35788 * 11 10 9 32 32 H 1.08996 * 117.49562 * 359.97438 * 12 11 10 33 33 H 1.09006 * 117.49690 * 145.02085 * 12 11 10 34 34 H 1.08997 * 117.49872 * 252.50836 * 13 12 11 35 35 H 1.09007 * 117.51555 * 107.47757 * 13 12 11 36 36 H 1.08006 * 126.19863 * 179.97438 * 14 10 9 37 37 H 0.97002 * 120.00435 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2077 0.0000 4 6 1.2965 2.3811 -0.0005 5 6 1.9636 3.5925 0.0043 6 6 3.3648 3.6104 -0.0009 7 6 4.0786 4.9095 -0.0009 8 6 3.4876 6.1855 0.0972 9 7 4.4410 7.0775 0.0615 10 7 5.6680 6.4142 -0.0591 11 6 6.9844 7.0521 -0.1384 12 6 8.2114 6.1742 0.1166 13 6 7.7759 7.2028 1.1623 14 6 5.4296 5.0890 -0.0962 15 7 4.0592 2.4857 -0.0004 16 6 3.4554 1.2935 0.0001 17 6 4.2295 0.1154 0.0012 18 1 3.7445 -0.8495 0.0011 19 6 5.6273 0.1963 0.0012 20 7 6.2147 1.3647 0.0008 21 14 6.6532 -1.3648 0.0020 22 1 5.7549 -2.5473 0.0018 23 1 7.5102 -1.3945 -1.2105 24 1 7.5098 -1.3936 1.2146 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2171 2.3463 -0.0005 29 1 1.4082 4.5187 0.0084 30 1 2.4308 6.3898 0.1856 31 1 7.0784 7.8459 -0.8795 32 1 8.0390 5.1222 0.3437 33 1 9.1128 6.3903 -0.4570 34 1 8.3909 8.0954 1.2768 35 1 7.3170 6.8276 2.0771 36 1 6.1720 4.3096 -0.1853 37 1 7.1831 1.4208 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241906743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = 106.400992 kcal Electronic energy + Delta-G solvation = -21695.880243 eV Core-core repulsion = 18441.565362 eV Total energy + Delta-G solvation = -3254.314881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67904 -38.76504 -37.09936 -36.44988 -33.66667 -31.01003 -30.49724 -30.19055 -28.22406 -26.48017 -25.56234 -23.14825 -22.63889 -21.64873 -21.35524 -19.66887 -19.32705 -17.62175 -16.78970 -16.51604 -15.65405 -15.52045 -14.71698 -14.70368 -14.31301 -14.11771 -13.68268 -13.11248 -12.94129 -12.67873 -12.42870 -12.17216 -12.01497 -11.56932 -11.34369 -11.23722 -11.23147 -10.89438 -10.81392 -10.58554 -10.48378 -10.36260 -10.15403 -9.71332 -9.44018 -8.86384 -8.27019 -8.03693 -7.70541 -6.67857 -6.42326 -4.36463 2.23828 2.62973 2.76519 2.87719 3.11157 3.16337 3.17036 3.60037 3.79078 3.97785 4.47481 4.54804 4.67929 4.83911 4.88382 5.26176 5.48415 5.54827 5.71011 5.74381 5.75951 5.86001 5.91874 5.95178 5.95939 5.99541 6.08268 6.20461 6.33765 6.53848 6.88474 6.98990 7.10202 7.22605 7.45162 7.54585 7.66942 7.96215 8.22033 8.25829 8.35348 8.74086 9.05416 10.07596 10.31623 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.006109 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.662219 B = 4582.230807 C = 6577.249310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.310 6.310 3 C -0.038 4.038 4 C -0.143 4.143 5 C -0.275 4.275 6 C 0.198 3.802 7 C -0.169 4.169 8 C 0.061 3.939 9 N -0.312 5.312 10 N -0.359 5.359 11 C 0.090 3.910 12 C -0.170 4.170 13 C -0.180 4.180 14 C 0.095 3.905 15 N -0.459 5.459 16 C 0.258 3.742 17 C -0.414 4.414 18 H 0.090 0.910 19 C 0.070 3.930 20 N -0.721 5.721 21 Si 0.907 3.093 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.181 0.819 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.188 0.812 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 5.885 0.130 6.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.223 6.223 3 C -0.086 4.086 4 C -0.167 4.167 5 C -0.299 4.299 6 C 0.055 3.945 7 C -0.181 4.181 8 C -0.126 4.126 9 N -0.132 5.132 10 N -0.140 5.140 11 C -0.014 4.014 12 C -0.208 4.208 13 C -0.218 4.218 14 C -0.050 4.050 15 N -0.174 5.174 16 C 0.130 3.870 17 C -0.446 4.446 18 H 0.108 0.892 19 C -0.154 4.154 20 N -0.344 5.344 21 Si 0.731 3.269 22 H -0.183 1.183 23 H -0.200 1.200 24 H -0.200 1.200 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.197 0.803 31 H 0.150 0.850 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.205 0.795 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.374 7.105 0.148 7.867 hybrid contribution -1.096 -1.330 -0.012 1.723 sum 2.278 5.775 0.136 6.209 Atomic orbital electron populations 1.22737 0.81844 1.01760 0.99889 1.85934 1.18192 1.27947 1.90249 1.20300 0.93662 0.83168 1.11492 1.20847 0.97643 0.92643 1.05615 1.20869 0.94071 0.96061 1.18879 1.18929 0.88896 0.90672 0.96016 1.18767 0.91691 0.92534 1.15091 1.23919 0.98802 0.90502 0.99423 1.77078 0.88683 1.21522 1.25883 1.47684 1.04506 1.04339 1.57474 1.21533 0.77795 1.00805 1.01257 1.23439 0.96456 0.98628 1.02314 1.23438 1.02721 1.01489 0.94188 1.22838 0.98377 0.85291 0.98538 1.68896 1.34819 0.95232 1.18500 1.18099 0.84990 0.92052 0.91861 1.19529 0.90544 0.93060 1.41513 0.89191 1.26015 0.98677 0.97123 0.93602 1.70145 1.09934 1.24491 1.29802 0.86280 0.79811 0.82439 0.78372 1.18322 1.19950 1.19961 0.94250 0.94241 0.89986 0.87968 0.88546 0.80250 0.84991 0.87028 0.86993 0.87574 0.88081 0.79500 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.83 101.05 0.99 1.57 16 2 O -0.31 -7.12 9.61 -18.34 -0.18 -7.30 16 3 C -0.04 -0.95 6.74 -38.06 -0.26 -1.21 16 4 C -0.14 -3.25 9.11 -39.22 -0.36 -3.61 16 5 C -0.28 -6.25 9.61 -38.85 -0.37 -6.63 16 6 C 0.20 4.83 6.76 -82.90 -0.56 4.27 16 7 C -0.17 -3.66 6.05 -105.34 -0.64 -4.30 16 8 C 0.06 1.16 11.40 -17.04 -0.19 0.96 16 9 N -0.31 -5.88 12.53 30.82 0.39 -5.49 16 10 N -0.36 -6.35 3.92 -54.58 -0.21 -6.57 16 11 C 0.09 1.19 7.13 -67.93 -0.48 0.70 16 12 C -0.17 -1.88 9.98 -26.73 -0.27 -2.15 16 13 C -0.18 -2.00 10.46 -26.73 -0.28 -2.28 16 14 C 0.10 1.92 10.52 -16.88 -0.18 1.74 16 15 N -0.46 -12.36 7.54 -7.57 -0.06 -12.42 16 16 C 0.26 7.08 6.56 -84.86 -0.56 6.52 16 17 C -0.41 -11.14 8.94 -37.88 -0.34 -11.48 16 18 H 0.09 2.37 7.31 -52.49 -0.38 1.99 16 19 C 0.07 1.74 5.50 -17.33 -0.10 1.65 16 20 N -0.72 -18.13 11.45 55.55 0.64 -17.49 16 21 Si 0.91 18.47 29.56 -169.99 -5.02 13.45 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.10 1.99 6.43 -52.49 -0.34 1.65 16 29 H 0.10 1.90 7.02 -52.49 -0.37 1.53 16 30 H 0.18 2.87 7.33 -52.49 -0.38 2.49 16 31 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.11 1.42 7.00 -51.93 -0.36 1.05 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.29 8.14 -51.92 -0.42 0.86 16 36 H 0.19 3.84 7.22 -52.48 -0.38 3.46 16 37 H 0.27 6.03 8.30 -40.82 -0.34 5.69 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -30.87 321.22 -7.46 -38.33 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.26 Total: 6.90 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -3.59 Total: -14.24 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.75 Total: -41.98 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.18 Total: -7.30 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.87 -7.46 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241906743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.727 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds