Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35550 * 117.00516 * 2 1 4 4 C 1.39148 * 120.47901 * 359.97438 * 3 2 1 5 5 C 1.38295 * 118.64411 * 179.77090 * 4 3 2 6 6 C 1.40131 * 119.57252 * 0.49824 * 5 4 3 7 7 C 1.48230 * 119.52087 * 179.76875 * 6 5 4 8 8 C 1.40960 * 126.25684 * 4.70326 * 7 6 5 9 9 N 1.30615 * 108.07459 * 180.02562 * 8 7 6 10 10 N 1.40005 * 108.57240 * 359.97438 * 9 8 7 11 11 C 1.46497 * 125.86715 * 179.73692 * 10 9 8 12 12 C 1.53003 * 117.49993 * 163.64508 * 11 10 9 13 13 C 1.53004 * 60.00146 * 252.50994 * 12 11 10 14 14 C 1.34696 * 108.26353 * 0.02562 * 10 9 8 15 15 N 1.32180 * 120.95585 * 359.48907 * 6 5 4 16 16 C 1.33641 * 121.44952 * 0.25626 * 15 6 5 17 17 C 1.40966 * 119.83038 * 180.02562 * 16 15 6 18 18 H 1.07993 * 120.00210 * 180.02562 * 17 16 15 19 19 C 1.40018 * 119.99700 * 359.97438 * 17 16 15 20 20 N 1.30774 * 120.00303 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99710 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46953 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46860 * 120.00343 * 21 19 17 24 24 H 1.48499 * 109.46981 * 240.00580 * 21 19 17 25 25 H 1.09006 * 109.46854 * 300.00212 * 1 2 3 26 26 H 1.08995 * 109.47544 * 59.99356 * 1 2 3 27 27 H 1.08997 * 109.47750 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.67249 * 0.02562 * 4 3 2 29 29 H 1.07996 * 120.21245 * 180.26788 * 5 4 3 30 30 H 1.08000 * 125.95885 * 359.97438 * 8 7 6 31 31 H 1.09006 * 115.55319 * 309.35788 * 11 10 9 32 32 H 1.08996 * 117.49562 * 359.97438 * 12 11 10 33 33 H 1.09006 * 117.49690 * 145.02085 * 12 11 10 34 34 H 1.08997 * 117.49872 * 252.50836 * 13 12 11 35 35 H 1.09007 * 117.51555 * 107.47757 * 13 12 11 36 36 H 1.08006 * 126.19863 * 179.97438 * 14 10 9 37 37 H 0.97002 * 120.00435 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2077 0.0000 4 6 1.2965 2.3811 -0.0005 5 6 1.9636 3.5925 0.0043 6 6 3.3648 3.6104 -0.0009 7 6 4.0786 4.9095 -0.0009 8 6 3.4876 6.1855 0.0972 9 7 4.4410 7.0775 0.0615 10 7 5.6680 6.4142 -0.0591 11 6 6.9844 7.0521 -0.1384 12 6 8.2114 6.1742 0.1166 13 6 7.7759 7.2028 1.1623 14 6 5.4296 5.0890 -0.0962 15 7 4.0592 2.4857 -0.0004 16 6 3.4554 1.2935 0.0001 17 6 4.2295 0.1154 0.0012 18 1 3.7445 -0.8495 0.0011 19 6 5.6273 0.1963 0.0012 20 7 6.2147 1.3647 0.0008 21 14 6.6532 -1.3648 0.0020 22 1 5.7549 -2.5473 0.0018 23 1 7.5102 -1.3945 -1.2105 24 1 7.5098 -1.3936 1.2146 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.2171 2.3463 -0.0005 29 1 1.4082 4.5187 0.0084 30 1 2.4308 6.3898 0.1856 31 1 7.0784 7.8459 -0.8795 32 1 8.0390 5.1222 0.3437 33 1 9.1128 6.3903 -0.4570 34 1 8.3909 8.0954 1.2768 35 1 7.3170 6.8276 2.0771 36 1 6.1720 4.3096 -0.1853 37 1 7.1831 1.4208 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241906743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = 87.996023 kcal Electronic energy + Delta-G solvation = -21696.678342 eV Core-core repulsion = 18441.565362 eV Total energy + Delta-G solvation = -3255.112980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13681 -40.51880 -38.43542 -37.90292 -35.50826 -32.62971 -32.21969 -31.76488 -29.86959 -28.02164 -27.30387 -24.54316 -23.69258 -23.27519 -22.95377 -21.13518 -20.83262 -19.34223 -18.34888 -18.18378 -17.26532 -16.68514 -16.47097 -16.27466 -15.80912 -15.60454 -14.98795 -14.76480 -14.49891 -14.15459 -13.97619 -13.81509 -13.46015 -13.01337 -12.89139 -12.85710 -12.52573 -12.48989 -12.11693 -12.07992 -11.93492 -11.79116 -11.55105 -11.37029 -11.23112 -10.27146 -9.97140 -9.80510 -9.56532 -8.43613 -8.25028 -6.29553 0.57152 1.02102 1.12968 1.43265 1.49075 1.51269 1.57455 2.10403 2.27981 2.61595 2.90832 2.98681 3.52900 3.69196 3.92967 3.95634 4.00107 4.05944 4.25754 4.32074 4.42509 4.50886 4.63030 4.64979 4.70296 4.75035 4.77015 4.88434 4.93468 5.09914 5.14303 5.26932 5.38717 5.56726 5.69795 5.80229 6.14927 6.18748 6.37603 6.47345 6.74851 6.87221 7.22485 8.20871 8.51067 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013473 B = 0.006109 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.662219 B = 4582.230807 C = 6577.249310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.336 6.336 3 C -0.057 4.057 4 C -0.142 4.142 5 C -0.273 4.273 6 C 0.175 3.825 7 C -0.202 4.202 8 C 0.065 3.935 9 N -0.317 5.317 10 N -0.350 5.350 11 C 0.056 3.944 12 C -0.160 4.160 13 C -0.165 4.165 14 C 0.094 3.906 15 N -0.484 5.484 16 C 0.220 3.780 17 C -0.453 4.453 18 H 0.081 0.919 19 C 0.028 3.972 20 N -0.748 5.748 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.265 1.265 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.112 0.888 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.208 0.792 31 H 0.155 0.845 32 H 0.089 0.911 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.081 0.919 36 H 0.176 0.824 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 6.968 0.081 7.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.249 6.249 3 C -0.105 4.105 4 C -0.166 4.166 5 C -0.296 4.296 6 C 0.033 3.967 7 C -0.214 4.214 8 C -0.122 4.122 9 N -0.137 5.137 10 N -0.131 5.131 11 C -0.045 4.045 12 C -0.198 4.198 13 C -0.203 4.203 14 C -0.054 4.054 15 N -0.200 5.200 16 C 0.091 3.909 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.193 4.193 20 N -0.371 5.371 21 Si 0.802 3.198 22 H -0.186 1.186 23 H -0.189 1.189 24 H -0.190 1.190 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.155 0.845 29 H 0.147 0.853 30 H 0.224 0.776 31 H 0.173 0.827 32 H 0.107 0.893 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.099 0.901 36 H 0.193 0.807 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.593 8.229 0.101 8.980 hybrid contribution -1.240 -1.557 0.013 1.991 sum 2.353 6.672 0.114 7.075 Atomic orbital electron populations 1.23090 0.78717 1.04256 1.00896 1.85874 1.21447 1.27328 1.90286 1.20369 0.93478 0.84661 1.12017 1.21225 0.99341 0.91792 1.04259 1.21289 0.93773 0.97519 1.17013 1.19462 0.90191 0.91131 0.95912 1.18869 0.92546 0.92514 1.17422 1.24234 1.00112 0.89099 0.98779 1.77031 0.89121 1.21671 1.25839 1.48013 1.05757 1.03510 1.55789 1.22142 0.76366 1.02338 1.03682 1.23529 0.96537 0.97304 1.02383 1.23505 1.01745 1.02649 0.92379 1.22676 0.97915 0.86319 0.98472 1.68834 1.36045 0.95803 1.19306 1.18540 0.86769 0.92611 0.92946 1.19685 0.91956 0.92760 1.44092 0.90125 1.26807 0.99087 1.00539 0.92881 1.70204 1.10704 1.26305 1.29909 0.85178 0.77871 0.77951 0.78815 1.18570 1.18932 1.19017 0.93102 0.93092 0.86945 0.84518 0.85295 0.77591 0.82745 0.89269 0.83605 0.84083 0.90085 0.80670 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.83 113.37 1.11 1.93 16 2 O -0.34 -15.57 9.61 -88.55 -0.85 -16.42 16 3 C -0.06 -2.92 6.74 23.25 0.16 -2.76 16 4 C -0.14 -6.34 9.11 22.50 0.21 -6.13 16 5 C -0.27 -12.22 9.61 22.74 0.22 -12.01 16 6 C 0.18 8.75 6.76 42.21 0.29 9.03 16 7 C -0.20 -8.84 6.05 -20.33 -0.12 -8.96 16 8 C 0.06 2.39 11.40 85.54 0.98 3.36 16 9 N -0.32 -11.58 12.53 -56.41 -0.71 -12.29 16 10 N -0.35 -12.23 3.92 -326.59 -1.28 -13.51 16 11 C 0.06 1.40 7.13 45.00 0.32 1.72 16 12 C -0.16 -3.27 9.98 30.60 0.31 -2.97 16 13 C -0.16 -3.32 10.46 30.60 0.32 -3.00 16 14 C 0.09 3.87 10.52 83.88 0.88 4.75 16 15 N -0.48 -27.17 7.54 -177.85 -1.34 -28.51 16 16 C 0.22 12.58 6.56 40.30 0.26 12.84 16 17 C -0.45 -25.53 8.94 23.37 0.21 -25.32 16 18 H 0.08 4.49 7.31 -2.91 -0.02 4.47 16 19 C 0.03 1.45 5.50 85.28 0.47 1.92 16 20 N -0.75 -39.07 11.45 21.84 0.25 -38.82 16 21 Si 0.98 38.86 29.56 68.60 2.03 40.88 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 24 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 25 H 0.05 1.50 7.69 -2.38 -0.02 1.48 16 26 H 0.05 1.50 7.69 -2.39 -0.02 1.49 16 27 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.14 4.99 6.43 -2.91 -0.02 4.97 16 29 H 0.13 4.79 7.02 -2.91 -0.02 4.77 16 30 H 0.21 6.16 7.33 -2.91 -0.02 6.13 16 31 H 0.16 3.12 8.14 -2.38 -0.02 3.10 16 32 H 0.09 2.28 7.00 -2.39 -0.02 2.27 16 33 H 0.15 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.18 7.59 7.22 -2.91 -0.02 7.57 16 37 H 0.28 12.86 8.30 -92.71 -0.77 12.09 16 Total: -1.00 -70.26 321.22 4.80 -65.46 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 1.10 Total: 28.79 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 5.60 Total: -25.58 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -3.08 Total: -93.13 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.85 Total: -16.42 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Total: -70.26 4.80 -65.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241906743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.459 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds