Wall clock time and date at job start Tue Mar 31 2020 05:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35520 * 116.99858 * 2 1 4 4 C 1.39087 * 120.49145 * 359.97438 * 3 2 1 5 5 C 1.38344 * 118.63432 * 180.02562 * 4 3 2 6 6 C 1.40031 * 119.57103 * 359.97438 * 5 4 3 7 7 C 1.48294 * 119.51396 * 179.97438 * 6 5 4 8 8 C 1.39835 * 120.91063 * 47.47261 * 7 6 5 9 9 C 1.37979 * 119.01465 * 180.02562 * 8 7 6 10 10 N 1.31921 * 120.88807 * 0.02562 * 9 8 7 11 11 C 1.31902 * 122.02300 * 359.97438 * 10 9 8 12 12 C 1.38027 * 120.88080 * 359.72004 * 11 10 9 13 13 C 1.50699 * 120.49265 * 180.30924 * 12 11 10 14 14 N 1.46897 * 109.47288 * 256.24430 * 13 12 11 15 15 N 1.32166 * 120.97156 * 359.72038 * 6 5 4 16 16 C 1.33532 * 121.46852 * 0.57013 * 15 6 5 17 17 C 1.41028 * 119.83408 * 179.71018 * 16 15 6 18 18 H 1.07999 * 119.99732 * 187.67293 * 17 16 15 19 19 C 1.40037 * 120.00029 * 7.94940 * 17 16 15 20 20 N 1.30767 * 119.99956 * 9.94107 * 19 17 16 21 21 Si 1.86796 * 119.99793 * 189.94182 * 19 17 16 22 22 H 1.48493 * 109.47277 * 359.97438 * 21 19 17 23 23 H 1.48509 * 109.47134 * 120.00037 * 21 19 17 24 24 H 1.48503 * 109.47136 * 239.99724 * 21 19 17 25 25 H 1.09005 * 109.46396 * 299.99855 * 1 2 3 26 26 H 1.08993 * 109.47094 * 59.99581 * 1 2 3 27 27 H 1.08993 * 109.46859 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.68421 * 0.04084 * 4 3 2 29 29 H 1.08000 * 120.21655 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.49178 * 359.97438 * 8 7 6 31 31 H 1.07998 * 119.55196 * 179.97438 * 9 8 7 32 32 H 1.07992 * 119.55765 * 180.02562 * 11 10 9 33 33 H 1.09008 * 109.47085 * 16.24707 * 13 12 11 34 34 H 1.08997 * 109.46936 * 136.24248 * 13 12 11 35 35 H 1.00905 * 111.00141 * 179.45201 * 14 13 12 36 36 H 1.00895 * 111.00270 * 303.40829 * 14 13 12 37 37 H 0.96994 * 119.99889 * 184.83646 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.2968 2.3804 -0.0005 5 6 1.9644 3.5921 -0.0011 6 6 3.3646 3.6096 -0.0005 7 6 4.0790 4.9091 -0.0016 8 6 3.7140 5.9302 0.8812 9 6 4.4050 7.1240 0.8462 10 7 5.3963 7.3080 -0.0046 11 6 5.7721 6.3713 -0.8538 12 6 5.1391 5.1451 -0.8817 13 6 5.5802 4.0786 -1.8508 14 7 4.6220 3.9995 -2.9615 15 7 4.0588 2.4850 0.0061 16 6 3.4559 1.2935 0.0010 17 6 4.2307 0.1151 0.0022 18 1 3.7533 -0.8450 -0.1267 19 6 5.6182 0.1895 0.1762 20 7 6.1731 1.3196 0.5299 21 14 6.6763 -1.3254 -0.0971 22 1 5.8127 -2.4684 -0.4880 23 1 7.6589 -1.0546 -1.1772 24 1 7.3985 -1.6576 1.1573 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2173 2.3460 -0.0003 29 1 1.4093 4.5185 -0.0011 30 1 2.9027 5.7869 1.5796 31 1 4.1302 7.9187 1.5239 32 1 6.5893 6.5646 -1.5328 33 1 6.5677 4.3272 -2.2398 34 1 5.6229 3.1174 -1.3386 35 1 4.9007 3.2970 -3.6301 36 1 3.6882 3.8250 -2.6217 37 1 7.1390 1.3900 0.5823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245558537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:31 Heat of formation + Delta-G solvation = 31.740469 kcal Electronic energy + Delta-G solvation = -22410.068908 eV Core-core repulsion = 19152.516504 eV Total energy + Delta-G solvation = -3257.552404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87413 -38.89301 -36.88561 -34.54904 -33.90518 -32.03359 -30.62238 -30.24793 -29.19178 -26.74997 -25.96924 -24.49934 -23.31079 -21.73925 -21.15932 -20.31190 -17.73413 -16.87321 -16.59149 -16.15400 -15.45837 -15.30042 -14.93050 -14.81263 -14.28614 -13.89776 -13.87047 -13.23017 -13.07156 -12.88649 -12.71169 -12.55380 -12.35080 -11.86810 -11.61328 -11.43614 -11.30313 -10.85608 -10.78964 -10.61893 -10.46543 -10.06324 -9.52709 -9.08668 -9.04945 -8.59920 -8.37049 -8.23300 -7.68182 -7.23933 -6.67515 -4.55290 1.57692 1.65446 2.56950 2.75286 3.03192 3.05301 3.08462 3.85566 4.24970 4.28900 4.53016 4.87990 5.12966 5.27139 5.32977 5.50277 5.58306 5.60410 5.61503 5.71193 5.79341 5.90112 5.91667 6.07605 6.21029 6.25108 6.41126 6.49375 6.60679 6.85731 6.97132 7.06467 7.14317 7.24797 7.36367 7.63126 7.66346 7.93979 8.02452 8.14499 8.43765 8.53286 8.80394 9.74987 10.11442 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.007324 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.739449 B = 3821.935735 C = 5175.709301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C -0.022 4.022 4 C -0.147 4.147 5 C -0.263 4.263 6 C 0.143 3.857 7 C 0.043 3.957 8 C -0.163 4.163 9 C 0.084 3.916 10 N -0.497 5.497 11 C 0.098 3.902 12 C -0.094 4.094 13 C 0.083 3.917 14 N -0.845 5.845 15 N -0.451 5.451 16 C 0.254 3.746 17 C -0.412 4.412 18 H 0.092 0.908 19 C 0.072 3.928 20 N -0.717 5.717 21 Si 0.905 3.095 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.273 1.273 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.336 0.664 36 H 0.340 0.660 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 2.159 -1.514 4.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.221 6.221 3 C -0.070 4.070 4 C -0.171 4.171 5 C -0.287 4.287 6 C 0.001 3.999 7 C 0.033 3.967 8 C -0.184 4.184 9 C -0.073 4.073 10 N -0.206 5.206 11 C -0.059 4.059 12 C -0.097 4.097 13 C -0.047 4.047 14 N -0.374 5.374 15 N -0.166 5.166 16 C 0.126 3.874 17 C -0.444 4.444 18 H 0.110 0.890 19 C -0.154 4.154 20 N -0.339 5.339 21 Si 0.729 3.271 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.199 1.199 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.603 3.598 -1.524 4.223 hybrid contribution -1.477 -2.155 0.344 2.635 sum -3.080 1.443 -1.180 3.600 Atomic orbital electron populations 1.22783 0.81456 1.02072 1.00037 1.85949 1.18508 1.27727 1.89873 1.20367 0.93683 0.83321 1.09675 1.20881 0.97941 0.92465 1.05808 1.20918 0.93707 0.96412 1.17682 1.19465 0.89492 0.91544 0.99361 1.18971 0.92657 0.92329 0.92707 1.22141 1.01870 0.94199 1.00196 1.22451 0.92221 0.96001 0.96624 1.67531 1.14491 1.33371 1.05197 1.22461 0.98727 0.88654 0.96008 1.20854 0.95501 0.96068 0.97241 1.20958 0.94316 0.99179 0.90256 1.58942 1.06164 1.55360 1.16902 1.68750 1.34754 0.95161 1.17889 1.18112 0.85060 0.91936 0.92262 1.19563 0.91413 0.93271 1.40106 0.88982 1.26022 0.98850 0.97328 0.93190 1.70009 1.11936 1.25270 1.26655 0.86292 0.79890 0.82075 0.78824 1.18245 1.19663 1.19862 0.94057 0.94074 0.89729 0.87591 0.88265 0.85217 0.83419 0.83442 0.91869 0.88002 0.85311 0.84763 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.83 101.05 0.99 1.50 16 2 O -0.31 -6.58 9.62 -18.25 -0.18 -6.75 16 3 C -0.02 -0.50 6.74 -38.05 -0.26 -0.75 16 4 C -0.15 -3.07 9.11 -39.23 -0.36 -3.42 16 5 C -0.26 -5.52 9.53 -38.87 -0.37 -5.89 16 6 C 0.14 3.19 5.00 -82.92 -0.41 2.77 16 7 C 0.04 0.87 5.59 -104.59 -0.58 0.29 16 8 C -0.16 -2.91 9.56 -39.08 -0.37 -3.28 16 9 C 0.08 1.38 11.17 -17.61 -0.20 1.18 16 10 N -0.50 -8.88 10.35 -13.34 -0.14 -9.02 16 11 C 0.10 1.76 10.82 -17.60 -0.19 1.57 16 12 C -0.09 -1.83 5.45 -104.12 -0.57 -2.40 16 13 C 0.08 1.60 6.36 -4.98 -0.03 1.57 16 14 N -0.85 -15.18 9.61 -11.41 -0.11 -15.29 16 15 N -0.45 -11.05 5.64 -7.56 -0.04 -11.09 16 16 C 0.25 6.43 6.52 -84.86 -0.55 5.88 16 17 C -0.41 -10.39 8.91 -37.85 -0.34 -10.73 16 18 H 0.09 2.29 7.36 -52.49 -0.39 1.90 16 19 C 0.07 1.70 5.45 -17.33 -0.09 1.60 16 20 N -0.72 -17.56 11.20 55.55 0.62 -16.93 16 21 Si 0.91 17.76 29.58 -169.99 -5.03 12.73 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 26 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.11 1.90 6.43 -52.48 -0.34 1.56 16 29 H 0.10 1.88 8.00 -52.49 -0.42 1.46 16 30 H 0.13 2.09 8.04 -52.49 -0.42 1.66 16 31 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.15 2.28 8.01 -52.49 -0.42 1.86 16 33 H 0.06 1.10 7.98 -51.92 -0.41 0.68 16 34 H 0.10 2.27 5.57 -51.93 -0.29 1.99 16 35 H 0.34 5.47 9.08 -39.29 -0.36 5.11 16 36 H 0.34 6.63 7.95 -39.29 -0.31 6.31 16 37 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -27.64 315.66 -7.59 -35.23 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -4.14 Total: 16.49 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.34 Total: -10.11 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.33 Total: -52.34 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.18 Total: -6.75 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.64 -7.59 -35.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245558537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.967 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds