Wall clock time and date at job start Tue Mar 31 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35520 * 116.99858 * 2 1 4 4 C 1.39087 * 120.49145 * 359.97438 * 3 2 1 5 5 C 1.38344 * 118.63432 * 180.02562 * 4 3 2 6 6 C 1.40031 * 119.57103 * 359.97438 * 5 4 3 7 7 C 1.48294 * 119.51396 * 179.97438 * 6 5 4 8 8 C 1.39835 * 120.91063 * 47.47261 * 7 6 5 9 9 C 1.37979 * 119.01465 * 180.02562 * 8 7 6 10 10 N 1.31921 * 120.88807 * 0.02562 * 9 8 7 11 11 C 1.31902 * 122.02300 * 359.97438 * 10 9 8 12 12 C 1.38027 * 120.88080 * 359.72004 * 11 10 9 13 13 C 1.50699 * 120.49265 * 180.30924 * 12 11 10 14 14 N 1.46897 * 109.47288 * 256.24430 * 13 12 11 15 15 N 1.32166 * 120.97156 * 359.72038 * 6 5 4 16 16 C 1.33532 * 121.46852 * 0.57013 * 15 6 5 17 17 C 1.41028 * 119.83408 * 179.71018 * 16 15 6 18 18 H 1.07999 * 119.99732 * 187.67293 * 17 16 15 19 19 C 1.40037 * 120.00029 * 7.94940 * 17 16 15 20 20 N 1.30767 * 119.99956 * 9.94107 * 19 17 16 21 21 Si 1.86796 * 119.99793 * 189.94182 * 19 17 16 22 22 H 1.48493 * 109.47277 * 359.97438 * 21 19 17 23 23 H 1.48509 * 109.47134 * 120.00037 * 21 19 17 24 24 H 1.48503 * 109.47136 * 239.99724 * 21 19 17 25 25 H 1.09005 * 109.46396 * 299.99855 * 1 2 3 26 26 H 1.08993 * 109.47094 * 59.99581 * 1 2 3 27 27 H 1.08993 * 109.46859 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.68421 * 0.04084 * 4 3 2 29 29 H 1.08000 * 120.21655 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.49178 * 359.97438 * 8 7 6 31 31 H 1.07998 * 119.55196 * 179.97438 * 9 8 7 32 32 H 1.07992 * 119.55765 * 180.02562 * 11 10 9 33 33 H 1.09008 * 109.47085 * 16.24707 * 13 12 11 34 34 H 1.08997 * 109.46936 * 136.24248 * 13 12 11 35 35 H 1.00905 * 111.00141 * 179.45201 * 14 13 12 36 36 H 1.00895 * 111.00270 * 303.40829 * 14 13 12 37 37 H 0.96994 * 119.99889 * 184.83646 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.2968 2.3804 -0.0005 5 6 1.9644 3.5921 -0.0011 6 6 3.3646 3.6096 -0.0005 7 6 4.0790 4.9091 -0.0016 8 6 3.7140 5.9302 0.8812 9 6 4.4050 7.1240 0.8462 10 7 5.3963 7.3080 -0.0046 11 6 5.7721 6.3713 -0.8538 12 6 5.1391 5.1451 -0.8817 13 6 5.5802 4.0786 -1.8508 14 7 4.6220 3.9995 -2.9615 15 7 4.0588 2.4850 0.0061 16 6 3.4559 1.2935 0.0010 17 6 4.2307 0.1151 0.0022 18 1 3.7533 -0.8450 -0.1267 19 6 5.6182 0.1895 0.1762 20 7 6.1731 1.3196 0.5299 21 14 6.6763 -1.3254 -0.0971 22 1 5.8127 -2.4684 -0.4880 23 1 7.6589 -1.0546 -1.1772 24 1 7.3985 -1.6576 1.1573 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2173 2.3460 -0.0003 29 1 1.4093 4.5185 -0.0011 30 1 2.9027 5.7869 1.5796 31 1 4.1302 7.9187 1.5239 32 1 6.5893 6.5646 -1.5328 33 1 6.5677 4.3272 -2.2398 34 1 5.6229 3.1174 -1.3386 35 1 4.9007 3.2970 -3.6301 36 1 3.6882 3.8250 -2.6217 37 1 7.1390 1.3900 0.5823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245558537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:29 Heat of formation + Delta-G solvation = 13.620214 kcal Electronic energy + Delta-G solvation = -22410.854661 eV Core-core repulsion = 19152.516504 eV Total energy + Delta-G solvation = -3258.338157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35213 -40.46059 -38.47607 -36.03321 -35.60440 -33.54690 -32.31526 -31.66120 -30.79498 -28.13166 -27.64688 -25.97626 -24.78665 -23.41099 -22.68475 -21.82560 -19.45162 -18.45995 -18.12597 -17.60950 -16.99578 -16.80261 -16.48885 -16.31230 -15.72510 -15.43707 -15.29629 -14.77346 -14.57363 -14.42448 -14.18876 -14.01765 -13.86208 -13.32500 -13.24786 -12.97796 -12.88269 -12.50067 -12.26140 -12.13955 -11.92567 -11.68742 -11.22601 -10.58144 -10.45969 -10.08543 -10.00020 -9.81597 -9.28989 -8.92091 -8.40399 -6.36522 0.07117 0.28391 0.88418 1.09935 1.40988 1.48357 1.54206 2.22616 2.74076 2.79823 2.94354 3.56452 3.64555 3.74411 3.85994 4.00400 4.15393 4.18707 4.28752 4.32818 4.46298 4.52334 4.54175 4.72369 4.76732 4.82946 4.87010 4.90074 5.09779 5.24954 5.32107 5.50857 5.54367 5.64521 5.84016 6.01395 6.12134 6.29314 6.36406 6.48694 6.78300 7.06939 7.10245 8.01813 8.39635 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013486 B = 0.007324 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.739449 B = 3821.935735 C = 5175.709301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.333 6.333 3 C -0.038 4.038 4 C -0.144 4.144 5 C -0.257 4.257 6 C 0.128 3.872 7 C 0.016 3.984 8 C -0.166 4.166 9 C 0.092 3.908 10 N -0.504 5.504 11 C 0.097 3.903 12 C -0.110 4.110 13 C 0.088 3.912 14 N -0.836 5.836 15 N -0.463 5.463 16 C 0.221 3.779 17 C -0.449 4.449 18 H 0.082 0.918 19 C 0.037 3.963 20 N -0.749 5.749 21 Si 0.973 3.027 22 H -0.260 1.260 23 H -0.264 1.264 24 H -0.270 1.270 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.113 0.887 28 H 0.138 0.862 29 H 0.123 0.877 30 H 0.146 0.854 31 H 0.189 0.811 32 H 0.169 0.831 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.343 0.657 36 H 0.331 0.669 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 3.271 -1.443 5.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.246 6.246 3 C -0.087 4.087 4 C -0.168 4.168 5 C -0.280 4.280 6 C -0.013 4.013 7 C 0.007 3.993 8 C -0.186 4.186 9 C -0.065 4.065 10 N -0.213 5.213 11 C -0.059 4.059 12 C -0.113 4.113 13 C -0.043 4.043 14 N -0.364 5.364 15 N -0.178 5.178 16 C 0.093 3.907 17 C -0.481 4.481 18 H 0.100 0.900 19 C -0.185 4.185 20 N -0.371 5.371 21 Si 0.795 3.205 22 H -0.184 1.184 23 H -0.189 1.189 24 H -0.195 1.195 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.156 0.844 29 H 0.141 0.859 30 H 0.164 0.836 31 H 0.205 0.795 32 H 0.186 0.814 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.142 0.858 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.334 4.722 -1.462 5.466 hybrid contribution -1.426 -2.382 0.340 2.797 sum -3.759 2.340 -1.121 4.568 Atomic orbital electron populations 1.23124 0.78467 1.04428 1.01038 1.85899 1.21626 1.27232 1.89888 1.20443 0.93502 0.84687 1.10020 1.21218 0.99512 0.91602 1.04515 1.21278 0.93565 0.97487 1.15716 1.19875 0.90391 0.91876 0.99177 1.19130 0.93636 0.92237 0.94311 1.22369 1.02432 0.94011 0.99811 1.23065 0.90911 0.96354 0.96174 1.67638 1.14977 1.33234 1.05457 1.22765 0.98899 0.88022 0.96240 1.20939 0.95925 0.96786 0.97610 1.20829 0.95244 0.97844 0.90363 1.58967 1.05410 1.55460 1.16527 1.68733 1.35664 0.95537 1.17886 1.18491 0.86619 0.92474 0.93110 1.19662 0.92611 0.93099 1.42727 0.90021 1.26696 0.99355 0.99953 0.92504 1.70074 1.12265 1.26978 1.27788 0.85279 0.78026 0.78433 0.78788 1.18387 1.18910 1.19458 0.93018 0.92836 0.86907 0.84402 0.85863 0.83644 0.79462 0.81367 0.90393 0.91183 0.84520 0.85836 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 9.83 113.37 1.11 1.83 16 2 O -0.33 -14.28 9.62 -88.23 -0.85 -15.13 16 3 C -0.04 -1.76 6.74 23.26 0.16 -1.61 16 4 C -0.14 -5.86 9.11 22.50 0.21 -5.66 16 5 C -0.26 -10.49 9.53 22.73 0.22 -10.27 16 6 C 0.13 5.73 5.00 42.21 0.21 5.94 16 7 C 0.02 0.65 5.59 -19.84 -0.11 0.54 16 8 C -0.17 -5.58 9.56 22.60 0.22 -5.36 16 9 C 0.09 2.74 11.17 84.62 0.95 3.69 16 10 N -0.50 -16.80 10.35 -196.11 -2.03 -18.83 16 11 C 0.10 3.33 10.82 84.63 0.92 4.25 16 12 C -0.11 -4.22 5.45 -19.54 -0.11 -4.33 16 13 C 0.09 3.40 6.36 85.56 0.54 3.95 16 14 N -0.84 -30.12 9.61 -190.01 -1.83 -31.94 16 15 N -0.46 -23.37 5.64 -177.84 -1.00 -24.37 16 16 C 0.22 11.60 6.52 40.35 0.26 11.86 16 17 C -0.45 -23.67 8.91 23.39 0.21 -23.46 16 18 H 0.08 4.28 7.36 -2.91 -0.02 4.26 16 19 C 0.04 1.82 5.45 85.29 0.46 2.29 16 20 N -0.75 -37.96 11.20 21.84 0.24 -37.72 16 21 Si 0.97 37.49 29.58 68.60 2.03 39.52 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 25 H 0.05 1.39 7.69 -2.38 -0.02 1.37 16 26 H 0.05 1.42 7.69 -2.39 -0.02 1.40 16 27 H 0.11 2.60 8.14 -2.39 -0.02 2.59 16 28 H 0.14 4.58 6.43 -2.91 -0.02 4.56 16 29 H 0.12 4.36 8.00 -2.91 -0.02 4.33 16 30 H 0.15 4.32 8.04 -2.91 -0.02 4.30 16 31 H 0.19 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.17 4.89 8.01 -2.91 -0.02 4.86 16 33 H 0.08 2.70 7.98 -2.38 -0.02 2.68 16 34 H 0.07 3.24 5.57 -2.39 -0.01 3.22 16 35 H 0.34 11.27 9.08 -89.69 -0.81 10.45 16 36 H 0.33 13.04 7.95 -89.70 -0.71 12.33 16 37 H 0.28 13.02 8.30 -92.71 -0.77 12.25 16 Total: -1.00 -61.30 315.66 1.41 -59.89 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.40 Total: 44.94 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 5.24 Total: -16.35 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -4.61 Total: -112.86 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.85 Total: -15.13 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -61.30 1.41 -59.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245558537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.506 kcal (2) G-P(sol) polarization free energy of solvation -61.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds