Wall clock time and date at job start Tue Mar 31 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35672 * 116.99886 * 2 1 4 4 C 1.38915 * 119.68465 * 179.97438 * 3 2 1 5 5 C 1.38386 * 119.11193 * 180.25666 * 4 3 2 6 6 C 1.50696 * 120.75413 * 179.72655 * 5 4 3 7 7 N 1.46503 * 109.47391 * 89.99823 * 6 5 4 8 8 C 1.38825 * 120.00015 * 179.97438 * 7 6 5 9 9 C 1.39785 * 119.58461 * 0.02562 * 8 7 6 10 10 C 1.38599 * 119.49120 * 179.97438 * 9 8 7 11 11 C 1.38390 * 118.68147 * 0.02562 * 10 9 8 12 12 C 1.40560 * 119.14575 * 359.97438 * 11 10 9 13 13 C 1.41308 * 119.78276 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00213 * 353.78365 * 13 12 11 15 15 C 1.40025 * 120.00070 * 173.78567 * 13 12 11 16 16 N 1.30739 * 119.99906 * 6.35050 * 15 13 12 17 17 Si 1.86802 * 119.99993 * 186.35167 * 15 13 12 18 18 H 1.48508 * 109.46939 * 94.98453 * 17 15 13 19 19 H 1.48504 * 109.47197 * 214.98106 * 17 15 13 20 20 H 1.48493 * 109.47402 * 334.98502 * 17 15 13 21 21 N 1.31953 * 119.58189 * 179.73046 * 8 7 6 22 22 C 1.38830 * 118.48240 * 359.50797 * 5 4 3 23 23 C 1.38045 * 119.28985 * 0.51530 * 22 5 4 24 24 N 1.31966 * 120.83389 * 359.72662 * 23 22 5 25 25 H 1.08995 * 109.47415 * 299.99424 * 1 2 3 26 26 H 1.08995 * 109.47306 * 60.00080 * 1 2 3 27 27 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.44608 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.47131 * 209.99584 * 6 5 4 30 30 H 1.09000 * 109.47667 * 329.99391 * 6 5 4 31 31 H 0.97005 * 119.99789 * 359.97438 * 7 6 5 32 32 H 1.08005 * 120.26090 * 359.97438 * 9 8 7 33 33 H 1.08000 * 120.66032 * 180.02562 * 10 9 8 34 34 H 1.07991 * 120.42754 * 179.97438 * 11 10 9 35 35 H 0.97009 * 119.99836 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.35098 * 180.26855 * 22 5 4 37 37 H 1.08000 * 119.58181 * 179.75347 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0484 2.5132 0.0059 6 6 5.5511 2.6269 0.0129 7 7 6.0443 2.6667 -1.3660 8 6 7.4063 2.7707 -1.6134 9 6 8.2996 2.8364 -0.5401 10 6 9.6591 2.9397 -0.7893 11 6 10.0927 2.9755 -2.1030 12 6 9.1452 2.9056 -3.1388 13 6 9.5732 2.9404 -4.4851 14 1 10.6124 3.1210 -4.7169 15 6 8.6498 2.7407 -5.5187 16 7 7.3745 2.6460 -5.2467 17 14 9.2402 2.6095 -7.2861 18 1 9.4156 1.1791 -7.6445 19 1 8.2368 3.2268 -8.1903 20 1 10.5373 3.3182 -7.4287 21 7 7.8419 2.8005 -2.8586 22 6 3.2504 3.6492 0.0002 23 6 1.8770 3.5097 0.0001 24 7 1.3186 2.3140 0.0001 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0228 0.3696 0.0014 29 1 5.8439 3.5407 0.5300 30 1 5.9783 1.7659 0.5269 31 1 5.4190 2.6203 -2.1063 32 1 7.9333 2.8069 0.4755 33 1 10.3660 2.9914 0.0256 34 1 11.1456 3.0560 -2.3294 35 1 6.7348 2.5080 -5.9628 36 1 3.6993 4.6315 -0.0002 37 1 1.2516 4.3902 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253071558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:09 Heat of formation + Delta-G solvation = 40.548564 kcal Electronic energy + Delta-G solvation = -20961.053185 eV Core-core repulsion = 17703.882729 eV Total energy + Delta-G solvation = -3257.170456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70749 -38.42794 -37.94763 -35.47027 -33.49463 -32.30163 -30.80709 -30.36136 -28.95211 -27.43138 -25.76632 -25.32251 -23.48367 -21.97843 -21.33918 -20.36354 -18.05771 -17.35700 -17.15713 -16.29873 -16.08751 -15.91976 -14.95071 -14.78252 -14.65907 -14.32262 -14.16106 -13.52552 -13.35331 -13.16827 -13.04336 -12.46858 -12.19425 -12.00458 -11.71993 -11.68513 -11.33049 -11.19205 -10.98774 -10.63093 -10.48746 -10.00087 -9.75141 -9.73057 -9.49503 -8.91832 -8.58340 -7.92047 -7.51560 -6.55436 -6.33937 -4.47370 1.06018 1.15567 2.87266 2.97760 3.11916 3.15348 3.22706 3.29666 3.63597 3.98947 4.20258 4.35142 4.66512 4.83089 4.93877 5.05443 5.09324 5.15388 5.17449 5.43489 5.54804 5.75507 5.79496 5.85149 6.04877 6.14558 6.29463 6.39593 6.55130 6.83834 6.88110 6.92200 7.13635 7.24495 7.57867 7.74804 7.79269 7.90052 8.15927 8.33675 8.64678 8.79767 9.10322 10.23584 10.39792 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003738 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.218364 B = 7488.511133 C = 8455.220561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.315 3.685 4 C -0.170 4.170 5 C -0.016 4.016 6 C 0.181 3.819 7 N -0.734 5.734 8 C 0.412 3.588 9 C -0.368 4.368 10 C -0.032 4.032 11 C -0.315 4.315 12 C 0.292 3.708 13 C -0.435 4.435 14 H 0.084 0.916 15 C 0.072 3.928 16 N -0.716 5.716 17 Si 0.905 3.095 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.262 1.262 21 N -0.531 5.531 22 C -0.190 4.190 23 C 0.134 3.866 24 N -0.541 5.541 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.397 0.603 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.270 0.730 36 H 0.140 0.860 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -0.986 8.669 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.136 3.864 4 C -0.191 4.191 5 C -0.024 4.024 6 C 0.055 3.945 7 N -0.372 5.372 8 C 0.172 3.828 9 C -0.394 4.394 10 C -0.056 4.056 11 C -0.338 4.338 12 C 0.166 3.834 13 C -0.467 4.467 14 H 0.102 0.898 15 C -0.153 4.153 16 N -0.337 5.337 17 Si 0.729 3.271 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.185 1.185 21 N -0.253 5.253 22 C -0.211 4.211 23 C -0.021 4.021 24 N -0.266 5.266 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.161 0.839 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.158 0.842 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.261 -1.413 8.086 15.596 hybrid contribution 1.173 0.132 -0.315 1.222 sum -12.088 -1.280 7.772 14.428 Atomic orbital electron populations 1.22825 0.77433 1.02779 1.02336 1.86248 1.22747 1.24617 1.87961 1.19785 0.89275 0.84655 0.92657 1.21029 0.91875 0.99386 1.06789 1.20252 0.96526 0.92051 0.93604 1.19956 0.86574 1.01940 0.86002 1.44033 1.04582 1.83847 1.04746 1.18462 0.83529 0.90026 0.90775 1.20594 0.93788 1.28535 0.96447 1.20598 0.94246 0.95172 0.95578 1.21549 0.98787 1.20272 0.93226 1.18195 0.85816 0.86537 0.92885 1.19589 0.95668 1.41969 0.89434 0.89832 1.26047 0.94581 0.93685 1.01035 1.70151 1.01724 1.28641 1.33199 0.86365 0.79696 0.79200 0.81820 1.19563 1.20247 1.18546 1.68185 1.16537 1.24949 1.15585 1.21983 0.94580 0.99754 1.04757 1.22355 0.92760 0.93536 0.93462 1.67277 1.41067 0.98887 1.19325 0.92442 0.92352 0.88772 0.83902 0.91441 0.91598 0.76802 0.89160 0.88883 0.88664 0.91934 0.84209 0.82325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -4.02 10.48 -18.72 -0.20 -4.21 16 3 C 0.31 4.36 7.49 -17.12 -0.13 4.23 16 4 C -0.17 -2.33 9.75 -39.28 -0.38 -2.71 16 5 C -0.02 -0.22 5.28 -104.35 -0.55 -0.77 16 6 C 0.18 2.74 5.05 -5.19 -0.03 2.72 16 7 N -0.73 -14.54 5.71 -61.57 -0.35 -14.89 16 8 C 0.41 9.96 7.65 -155.33 -1.19 8.77 16 9 C -0.37 -8.34 9.34 -38.87 -0.36 -8.71 16 10 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 11 C -0.32 -7.96 9.83 -38.65 -0.38 -8.34 16 12 C 0.29 8.15 6.54 -85.00 -0.56 7.60 16 13 C -0.43 -11.80 9.13 -37.75 -0.34 -12.14 16 14 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 15 C 0.07 1.84 5.49 -17.35 -0.10 1.75 16 16 N -0.72 -19.15 11.48 55.55 0.64 -18.51 16 17 Si 0.90 18.82 29.56 -169.99 -5.03 13.79 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 N -0.53 -14.68 7.91 -10.33 -0.08 -14.76 16 22 C -0.19 -2.28 9.81 -39.43 -0.39 -2.66 16 23 C 0.13 1.53 11.18 -17.56 -0.20 1.33 16 24 N -0.54 -7.12 9.22 -13.33 -0.12 -7.25 16 25 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 26 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 30 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 31 H 0.40 8.11 8.59 -40.82 -0.35 7.76 16 32 H 0.09 1.79 6.68 -52.48 -0.35 1.44 16 33 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 36 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 324.57 15.07 4.89 4.89 Total: -1.00 -30.95 324.57 -8.64 -39.59 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.44 Total: 9.98 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -3.95 Total: -8.64 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.08 Total: -55.40 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.20 Total: -4.21 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.95 -8.64 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253071558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.141 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds