Wall clock time and date at job start Tue Mar 31 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35672 * 116.99886 * 2 1 4 4 C 1.38915 * 119.68465 * 179.97438 * 3 2 1 5 5 C 1.38386 * 119.11193 * 180.25666 * 4 3 2 6 6 C 1.50696 * 120.75413 * 179.72655 * 5 4 3 7 7 N 1.46503 * 109.47391 * 89.99823 * 6 5 4 8 8 C 1.38825 * 120.00015 * 179.97438 * 7 6 5 9 9 C 1.39785 * 119.58461 * 0.02562 * 8 7 6 10 10 C 1.38599 * 119.49120 * 179.97438 * 9 8 7 11 11 C 1.38390 * 118.68147 * 0.02562 * 10 9 8 12 12 C 1.40560 * 119.14575 * 359.97438 * 11 10 9 13 13 C 1.41308 * 119.78276 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00213 * 353.78365 * 13 12 11 15 15 C 1.40025 * 120.00070 * 173.78567 * 13 12 11 16 16 N 1.30739 * 119.99906 * 6.35050 * 15 13 12 17 17 Si 1.86802 * 119.99993 * 186.35167 * 15 13 12 18 18 H 1.48508 * 109.46939 * 94.98453 * 17 15 13 19 19 H 1.48504 * 109.47197 * 214.98106 * 17 15 13 20 20 H 1.48493 * 109.47402 * 334.98502 * 17 15 13 21 21 N 1.31953 * 119.58189 * 179.73046 * 8 7 6 22 22 C 1.38830 * 118.48240 * 359.50797 * 5 4 3 23 23 C 1.38045 * 119.28985 * 0.51530 * 22 5 4 24 24 N 1.31966 * 120.83389 * 359.72662 * 23 22 5 25 25 H 1.08995 * 109.47415 * 299.99424 * 1 2 3 26 26 H 1.08995 * 109.47306 * 60.00080 * 1 2 3 27 27 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.44608 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.47131 * 209.99584 * 6 5 4 30 30 H 1.09000 * 109.47667 * 329.99391 * 6 5 4 31 31 H 0.97005 * 119.99789 * 359.97438 * 7 6 5 32 32 H 1.08005 * 120.26090 * 359.97438 * 9 8 7 33 33 H 1.08000 * 120.66032 * 180.02562 * 10 9 8 34 34 H 1.07991 * 120.42754 * 179.97438 * 11 10 9 35 35 H 0.97009 * 119.99836 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.35098 * 180.26855 * 22 5 4 37 37 H 1.08000 * 119.58181 * 179.75347 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0484 2.5132 0.0059 6 6 5.5511 2.6269 0.0129 7 7 6.0443 2.6667 -1.3660 8 6 7.4063 2.7707 -1.6134 9 6 8.2996 2.8364 -0.5401 10 6 9.6591 2.9397 -0.7893 11 6 10.0927 2.9755 -2.1030 12 6 9.1452 2.9056 -3.1388 13 6 9.5732 2.9404 -4.4851 14 1 10.6124 3.1210 -4.7169 15 6 8.6498 2.7407 -5.5187 16 7 7.3745 2.6460 -5.2467 17 14 9.2402 2.6095 -7.2861 18 1 9.4156 1.1791 -7.6445 19 1 8.2368 3.2268 -8.1903 20 1 10.5373 3.3182 -7.4287 21 7 7.8419 2.8005 -2.8586 22 6 3.2504 3.6492 0.0002 23 6 1.8770 3.5097 0.0001 24 7 1.3186 2.3140 0.0001 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0228 0.3696 0.0014 29 1 5.8439 3.5407 0.5300 30 1 5.9783 1.7659 0.5269 31 1 5.4190 2.6203 -2.1063 32 1 7.9333 2.8069 0.4755 33 1 10.3660 2.9914 0.0256 34 1 11.1456 3.0560 -2.3294 35 1 6.7348 2.5080 -5.9628 36 1 3.6993 4.6315 -0.0002 37 1 1.2516 4.3902 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253071558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:08 Heat of formation + Delta-G solvation = 20.343632 kcal Electronic energy + Delta-G solvation = -20961.929337 eV Core-core repulsion = 17703.882729 eV Total energy + Delta-G solvation = -3258.046608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.68866 -40.12509 -39.04562 -36.94328 -35.27366 -33.67640 -32.23762 -31.75082 -30.65834 -28.33986 -27.32574 -26.92634 -24.45938 -23.49643 -22.85906 -22.04974 -19.34892 -19.01958 -18.16352 -17.88827 -17.03193 -16.96058 -16.59653 -16.46272 -15.97691 -15.67856 -15.23849 -15.05984 -14.75694 -14.66215 -14.30596 -13.86331 -13.68597 -13.34932 -13.02994 -12.84611 -12.72159 -12.60433 -12.54502 -12.26067 -12.16006 -11.74271 -11.29470 -10.85605 -10.73624 -10.67705 -9.82771 -9.54168 -9.43596 -8.31852 -8.23418 -6.46735 0.04285 0.16683 1.06687 1.35832 1.41768 1.55682 1.58377 2.08204 2.25380 2.52356 2.92632 2.95583 3.30048 3.58209 3.93440 4.06305 4.07967 4.16410 4.39804 4.42189 4.43033 4.55884 4.58586 4.73785 4.73985 4.80793 4.86352 5.00177 5.02538 5.11954 5.31523 5.36235 5.41028 5.72417 5.97848 6.06801 6.20492 6.23259 6.53949 6.78167 6.82081 6.92004 7.20262 8.34572 8.51510 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003738 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.218364 B = 7488.511133 C = 8455.220561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.324 6.324 3 C 0.302 3.698 4 C -0.183 4.183 5 C -0.022 4.022 6 C 0.182 3.818 7 N -0.729 5.729 8 C 0.395 3.605 9 C -0.364 4.364 10 C -0.029 4.029 11 C -0.343 4.343 12 C 0.259 3.741 13 C -0.472 4.472 14 H 0.086 0.914 15 C 0.027 3.973 16 N -0.753 5.753 17 Si 0.985 3.015 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.255 1.255 21 N -0.567 5.567 22 C -0.189 4.189 23 C 0.137 3.863 24 N -0.548 5.548 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.140 0.860 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.391 0.609 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.275 0.725 36 H 0.157 0.843 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 -0.565 9.347 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.231 6.231 3 C 0.124 3.876 4 C -0.204 4.204 5 C -0.030 4.030 6 C 0.059 3.941 7 N -0.365 5.365 8 C 0.155 3.845 9 C -0.390 4.390 10 C -0.054 4.054 11 C -0.366 4.366 12 C 0.132 3.868 13 C -0.504 4.504 14 H 0.104 0.896 15 C -0.194 4.194 16 N -0.375 5.375 17 Si 0.805 3.195 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.178 1.178 21 N -0.290 5.290 22 C -0.209 4.209 23 C -0.018 4.018 24 N -0.273 5.273 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.158 0.842 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.225 0.775 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.175 0.825 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.021 -0.999 8.815 16.592 hybrid contribution 1.287 0.009 -0.354 1.335 sum -12.734 -0.990 8.461 15.321 Atomic orbital electron populations 1.23056 0.75714 1.04606 1.02331 1.86226 1.24538 1.24496 1.87884 1.19930 0.89449 0.85204 0.93031 1.21081 0.92227 0.99540 1.07557 1.20114 0.95586 0.92635 0.94706 1.20101 0.87773 1.02748 0.83517 1.44190 1.02954 1.82782 1.06564 1.18901 0.85454 0.89664 0.90486 1.20971 0.93624 1.26771 0.97584 1.21030 0.95219 0.93394 0.95716 1.21710 0.98903 1.21955 0.94035 1.18660 0.86729 0.87291 0.94078 1.19934 0.96324 1.43836 0.90350 0.89557 1.26939 0.94437 0.92664 1.05393 1.70251 1.02944 1.29500 1.34840 0.85170 0.79351 0.79250 0.75730 1.19103 1.19333 1.17839 1.68147 1.16841 1.26364 1.17599 1.22212 0.94861 0.99942 1.03893 1.22949 0.93053 0.94019 0.91825 1.67359 1.41240 0.99265 1.19436 0.92060 0.92655 0.86130 0.84183 0.90037 0.91101 0.77491 0.85918 0.85131 0.87964 0.91451 0.82522 0.78893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.84 16 2 O -0.32 -8.24 10.48 -89.89 -0.94 -9.19 16 3 C 0.30 8.15 7.49 84.79 0.63 8.78 16 4 C -0.18 -4.95 9.75 22.47 0.22 -4.73 16 5 C -0.02 -0.58 5.28 -19.69 -0.10 -0.68 16 6 C 0.18 5.27 5.05 85.63 0.43 5.70 16 7 N -0.73 -28.63 5.71 -348.72 -1.99 -30.62 16 8 C 0.40 19.11 7.65 133.42 1.02 20.13 16 9 C -0.36 -15.94 9.34 22.73 0.21 -15.73 16 10 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 11 C -0.34 -17.49 9.83 22.87 0.22 -17.27 16 12 C 0.26 14.87 6.54 40.18 0.26 15.13 16 13 C -0.47 -26.44 9.13 23.46 0.21 -26.22 16 14 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 15 C 0.03 1.43 5.49 85.29 0.47 1.90 16 16 N -0.75 -41.35 11.48 21.84 0.25 -41.10 16 17 Si 0.98 39.10 29.56 68.60 2.03 41.13 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 21 N -0.57 -32.08 7.91 -186.60 -1.48 -33.56 16 22 C -0.19 -4.12 9.81 22.37 0.22 -3.90 16 23 C 0.14 2.80 11.18 84.63 0.95 3.74 16 24 N -0.55 -13.59 9.22 -308.96 -2.85 -16.44 16 25 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 26 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 27 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 29 H 0.08 2.15 7.88 -2.39 -0.02 2.13 16 30 H 0.07 1.99 7.88 -2.39 -0.02 1.97 16 31 H 0.39 16.16 8.59 -92.70 -0.80 15.36 16 32 H 0.12 4.49 6.68 -2.91 -0.02 4.47 16 33 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 34 H 0.10 4.87 8.06 -2.92 -0.02 4.85 16 35 H 0.27 13.70 8.29 -92.70 -0.77 12.93 16 36 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -68.35 324.57 1.48 -66.88 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.30 Total: 35.29 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 6.15 Total: -12.40 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -6.07 Total: -121.72 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.94 Total: -9.19 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -68.35 1.48 -66.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253071558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.220 kcal (2) G-P(sol) polarization free energy of solvation -68.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds