Wall clock time and date at job start Tue Mar 31 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47648 * 2 1 4 4 H 1.08993 * 109.47674 * 181.39704 * 3 2 1 5 5 C 1.50705 * 109.47182 * 301.40299 * 3 2 1 6 6 H 1.07995 * 120.00289 * 120.00000 * 5 3 2 7 7 C 1.37876 * 119.99517 * 299.99378 * 5 3 2 8 8 N 1.31515 * 120.00045 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47615 * 89.99490 * 9 7 5 11 11 H 1.48499 * 109.47379 * 210.00363 * 9 7 5 12 12 H 1.48505 * 109.46927 * 330.00039 * 9 7 5 13 13 N 1.46909 * 109.46885 * 61.39429 * 3 2 1 14 14 C 1.46903 * 110.99443 * 86.43177 * 13 3 2 15 15 C 1.50705 * 109.47099 * 86.26992 * 14 13 3 16 16 C 1.38617 * 120.79708 * 258.64951 * 15 14 13 17 17 N 1.32314 * 119.10044 * 180.02562 * 16 15 14 18 18 C 1.31806 * 120.82211 * 359.97438 * 17 16 15 19 19 N 1.31782 * 121.75165 * 359.97438 * 18 17 16 20 20 C 1.32353 * 120.81921 * 359.71267 * 19 18 17 21 21 C 1.50694 * 120.44807 * 180.28491 * 20 19 18 22 22 C 1.52999 * 109.47344 * 3.16146 * 21 20 19 23 23 F 1.39901 * 109.47497 * 123.16261 * 21 20 19 24 24 F 1.39902 * 109.47182 * 243.16537 * 21 20 19 25 25 H 1.09002 * 109.47221 * 53.96619 * 1 2 3 26 26 H 1.09005 * 109.47208 * 293.96747 * 1 2 3 27 27 H 1.09000 * 109.47794 * 173.96625 * 1 2 3 28 28 H 1.08996 * 109.47129 * 120.00220 * 2 1 3 29 29 H 1.09008 * 109.47002 * 239.99886 * 2 1 3 30 30 H 0.97003 * 120.00189 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00049 * 322.47988 * 13 3 2 32 32 H 1.09002 * 109.46941 * 206.26513 * 14 13 3 33 33 H 1.08996 * 109.47142 * 326.26610 * 14 13 3 34 34 H 1.07995 * 120.44836 * 359.97438 * 16 15 14 35 35 H 1.08001 * 119.12721 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.47256 * 60.00057 * 22 21 20 37 37 H 1.09005 * 109.47360 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47212 * 300.00023 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4425 -0.0251 5 6 1.5096 2.1629 -1.2127 6 1 0.8913 3.0401 -1.0922 7 6 1.8137 1.7021 -2.4761 8 7 2.5672 0.6342 -2.6228 9 14 1.1569 2.5953 -3.9794 10 1 2.1260 3.6401 -4.3972 11 1 0.9662 1.6254 -5.0876 12 1 -0.1439 3.2308 -3.6485 13 7 1.5781 2.1251 1.2160 14 6 2.5059 1.8977 2.3320 15 6 3.6075 2.9252 2.2868 16 6 4.8583 2.6030 1.7836 17 7 5.8011 3.5311 1.7602 18 6 5.5622 4.7478 2.2070 19 7 4.3854 5.0902 2.6914 20 6 3.3923 4.2166 2.7407 21 6 2.0480 4.6189 3.2903 22 6 2.0683 6.1058 3.6500 23 9 1.0612 4.3857 2.3264 24 9 1.7682 3.8659 4.4358 25 1 -0.3634 0.6045 -0.8310 26 1 -0.3634 0.4175 0.9391 27 1 -0.3635 -1.0219 -0.1080 28 1 1.8932 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.7809 0.3097 -3.5117 31 1 0.6423 1.8368 1.4593 32 1 1.9672 1.9839 3.2757 33 1 2.9362 0.8997 2.2492 34 1 5.0607 1.6078 1.4163 35 1 6.3518 5.4839 2.1754 36 1 2.2862 6.6926 2.7577 37 1 1.0960 6.3967 4.0480 38 1 2.8370 6.2876 4.4011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:44 Heat of formation + Delta-G solvation = -46.066130 kcal Electronic energy + Delta-G solvation = -23764.129243 eV Core-core repulsion = 20084.806457 eV Total energy + Delta-G solvation = -3679.322787 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.80152 -46.69497 -40.91044 -36.80529 -34.36030 -33.62824 -31.81023 -30.90554 -29.80577 -26.83054 -25.48610 -25.03979 -23.35590 -22.04217 -21.76413 -19.25918 -18.04171 -17.68165 -17.29867 -16.26155 -15.78069 -15.28866 -15.14549 -14.80809 -14.36992 -14.16730 -13.63739 -13.58787 -13.52568 -13.07694 -12.76712 -12.66395 -12.55065 -12.42407 -12.10648 -11.86911 -11.82104 -11.12776 -10.92401 -10.80822 -10.69610 -10.67710 -10.54498 -10.03104 -9.90143 -9.64536 -9.24766 -9.13015 -8.99104 -8.35947 -7.33872 -6.00022 -4.01235 0.94130 1.12539 3.31508 3.38236 3.40204 3.42303 3.79463 4.10432 4.27614 4.36063 4.43327 4.72684 4.86036 4.98091 5.03164 5.32017 5.37276 5.49270 5.57548 5.70977 5.79787 5.94186 5.96746 6.08883 6.28572 6.32330 6.45574 6.50762 6.83583 6.99063 7.16917 7.21750 7.44997 7.66772 7.86191 8.11716 8.22870 8.47049 8.55934 9.04934 9.62794 11.06841 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.006150 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.013004 B = 4551.726446 C = 4840.557317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.670 5.670 14 C 0.088 3.912 15 C -0.117 4.117 16 C 0.161 3.839 17 N -0.506 5.506 18 C 0.279 3.721 19 N -0.499 5.499 20 C 0.118 3.882 21 C 0.350 3.650 22 C -0.175 4.175 23 F -0.157 7.157 24 F -0.195 7.195 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.025 0.975 28 H 0.011 0.989 29 H 0.096 0.904 30 H 0.259 0.741 31 H 0.337 0.663 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.172 0.828 35 H 0.198 0.802 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 5.488 12.427 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.188 4.188 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.302 5.302 14 C -0.044 4.044 15 C -0.122 4.122 16 C -0.006 4.006 17 N -0.219 5.219 18 C -0.009 4.009 19 N -0.212 5.212 20 C -0.030 4.030 21 C 0.313 3.687 22 C -0.233 4.233 23 F -0.138 7.138 24 F -0.176 7.176 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.029 0.971 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.189 0.811 35 H 0.214 0.786 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.497 6.645 12.080 14.011 hybrid contribution -1.106 -1.288 -0.823 1.886 sum 1.391 5.357 11.257 12.544 Atomic orbital electron populations 1.21608 0.97699 0.98979 1.00677 1.22132 0.94942 1.01126 1.00555 1.19288 0.95259 0.88354 0.86351 0.95167 1.21050 1.30699 1.11385 0.89352 0.92008 1.24897 0.95483 0.95130 0.98820 1.69856 1.37871 1.23307 1.22590 0.86591 0.79392 0.79396 0.82606 1.20927 1.21416 1.19892 1.60705 1.03723 1.62965 1.02819 1.20810 0.92959 0.93951 0.96652 1.21661 0.97662 0.96494 0.96411 1.23255 0.87792 0.99187 0.90394 1.68365 1.35490 1.02671 1.15376 1.24828 0.92766 0.92304 0.91040 1.67967 1.00986 1.36254 1.15994 1.21581 0.94621 0.90421 0.96397 1.19053 0.82644 0.91820 0.75186 1.22566 1.04256 0.91343 1.05102 1.93223 1.62075 1.95471 1.63032 1.93000 1.94336 1.79104 1.51158 0.91287 0.95304 0.95562 0.97054 0.88553 0.93112 0.84303 0.90669 0.93254 0.81124 0.78584 0.88945 0.90320 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.37 37.15 0.35 -2.35 16 2 C -0.15 -3.30 5.54 -26.74 -0.15 -3.45 16 3 C 0.22 5.05 2.12 -68.86 -0.15 4.90 16 4 H 0.03 0.78 7.14 -51.93 -0.37 0.41 16 5 C -0.49 -12.92 7.41 -34.44 -0.26 -13.17 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -24.87 11.33 55.43 0.63 -24.24 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -13.49 4.39 -109.21 -0.48 -13.97 16 14 C 0.09 1.50 5.12 -4.97 -0.03 1.48 16 15 C -0.12 -2.02 5.25 -104.36 -0.55 -2.56 16 16 C 0.16 2.71 10.40 -17.20 -0.18 2.53 16 17 N -0.51 -8.24 10.44 -14.58 -0.15 -8.39 16 18 C 0.28 4.02 12.29 -92.15 -1.13 2.88 16 19 N -0.50 -7.62 9.19 -10.80 -0.10 -7.72 16 20 C 0.12 1.94 6.19 -82.25 -0.51 1.43 16 21 C 0.35 5.30 1.84 -27.89 -0.05 5.25 16 22 C -0.17 -2.06 8.62 37.16 0.32 -1.74 16 23 F -0.16 -2.78 14.68 2.25 0.03 -2.75 16 24 F -0.19 -2.88 15.47 2.25 0.03 -2.85 16 25 H 0.07 1.55 6.96 -51.93 -0.36 1.19 16 26 H 0.03 0.52 6.56 -51.93 -0.34 0.18 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.01 0.22 7.54 -51.93 -0.39 -0.17 16 29 H 0.10 2.45 6.11 -51.92 -0.32 2.13 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.34 6.56 6.52 -39.29 -0.26 6.30 16 32 H 0.08 1.18 6.35 -51.93 -0.33 0.85 16 33 H 0.05 0.82 7.11 -51.93 -0.37 0.45 16 34 H 0.17 2.67 8.06 -52.49 -0.42 2.24 16 35 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.96 8.03 -51.93 -0.42 0.54 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -28.90 314.76 -7.54 -36.45 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.81 Total: 5.69 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.42 Total: -3.36 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.10 Total: -54.32 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.07 Total: -5.60 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.90 -7.54 -36.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.621 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds