Wall clock time and date at job start Tue Mar 31 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47648 * 2 1 4 4 H 1.08993 * 109.47674 * 181.39704 * 3 2 1 5 5 C 1.50705 * 109.47182 * 301.40299 * 3 2 1 6 6 H 1.07995 * 120.00289 * 120.00000 * 5 3 2 7 7 C 1.37876 * 119.99517 * 299.99378 * 5 3 2 8 8 N 1.31515 * 120.00045 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47615 * 89.99490 * 9 7 5 11 11 H 1.48499 * 109.47379 * 210.00363 * 9 7 5 12 12 H 1.48505 * 109.46927 * 330.00039 * 9 7 5 13 13 N 1.46909 * 109.46885 * 61.39429 * 3 2 1 14 14 C 1.46903 * 110.99443 * 86.43177 * 13 3 2 15 15 C 1.50705 * 109.47099 * 86.26992 * 14 13 3 16 16 C 1.38617 * 120.79708 * 258.64951 * 15 14 13 17 17 N 1.32314 * 119.10044 * 180.02562 * 16 15 14 18 18 C 1.31806 * 120.82211 * 359.97438 * 17 16 15 19 19 N 1.31782 * 121.75165 * 359.97438 * 18 17 16 20 20 C 1.32353 * 120.81921 * 359.71267 * 19 18 17 21 21 C 1.50694 * 120.44807 * 180.28491 * 20 19 18 22 22 C 1.52999 * 109.47344 * 3.16146 * 21 20 19 23 23 F 1.39901 * 109.47497 * 123.16261 * 21 20 19 24 24 F 1.39902 * 109.47182 * 243.16537 * 21 20 19 25 25 H 1.09002 * 109.47221 * 53.96619 * 1 2 3 26 26 H 1.09005 * 109.47208 * 293.96747 * 1 2 3 27 27 H 1.09000 * 109.47794 * 173.96625 * 1 2 3 28 28 H 1.08996 * 109.47129 * 120.00220 * 2 1 3 29 29 H 1.09008 * 109.47002 * 239.99886 * 2 1 3 30 30 H 0.97003 * 120.00189 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00049 * 322.47988 * 13 3 2 32 32 H 1.09002 * 109.46941 * 206.26513 * 14 13 3 33 33 H 1.08996 * 109.47142 * 326.26610 * 14 13 3 34 34 H 1.07995 * 120.44836 * 359.97438 * 16 15 14 35 35 H 1.08001 * 119.12721 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.47256 * 60.00057 * 22 21 20 37 37 H 1.09005 * 109.47360 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.47212 * 300.00023 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4425 -0.0251 5 6 1.5096 2.1629 -1.2127 6 1 0.8913 3.0401 -1.0922 7 6 1.8137 1.7021 -2.4761 8 7 2.5672 0.6342 -2.6228 9 14 1.1569 2.5953 -3.9794 10 1 2.1260 3.6401 -4.3972 11 1 0.9662 1.6254 -5.0876 12 1 -0.1439 3.2308 -3.6485 13 7 1.5781 2.1251 1.2160 14 6 2.5059 1.8977 2.3320 15 6 3.6075 2.9252 2.2868 16 6 4.8583 2.6030 1.7836 17 7 5.8011 3.5311 1.7602 18 6 5.5622 4.7478 2.2070 19 7 4.3854 5.0902 2.6914 20 6 3.3923 4.2166 2.7407 21 6 2.0480 4.6189 3.2903 22 6 2.0683 6.1058 3.6500 23 9 1.0612 4.3857 2.3264 24 9 1.7682 3.8659 4.4358 25 1 -0.3634 0.6045 -0.8310 26 1 -0.3634 0.4175 0.9391 27 1 -0.3635 -1.0219 -0.1080 28 1 1.8932 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.7809 0.3097 -3.5117 31 1 0.6423 1.8368 1.4593 32 1 1.9672 1.9839 3.2757 33 1 2.9362 0.8997 2.2492 34 1 5.0607 1.6078 1.4163 35 1 6.3518 5.4839 2.1754 36 1 2.2862 6.6926 2.7577 37 1 1.0960 6.3967 4.0480 38 1 2.8370 6.2876 4.4011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:43 Heat of formation + Delta-G solvation = -62.308261 kcal Electronic energy + Delta-G solvation = -23764.833555 eV Core-core repulsion = 20084.806457 eV Total energy + Delta-G solvation = -3680.027098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.00499 -47.92941 -42.13920 -38.48206 -35.58236 -35.21239 -33.56698 -32.17328 -31.22817 -28.61116 -26.66385 -26.57587 -25.15586 -23.39004 -22.97356 -21.03635 -19.22595 -18.97146 -18.51500 -18.12580 -17.01604 -16.77753 -16.72940 -16.35390 -15.73160 -15.59257 -15.34424 -14.83672 -14.73622 -14.38718 -14.30596 -14.25841 -13.88713 -13.67693 -13.44100 -13.33388 -13.09389 -12.84686 -12.53735 -12.44131 -12.27308 -12.12560 -11.91841 -11.83543 -11.68526 -11.41731 -10.97107 -10.53503 -10.41205 -10.35945 -8.97478 -8.05983 -6.12606 -0.31387 -0.12883 1.38921 1.41629 1.50420 2.22246 2.43883 2.57063 3.03555 3.14153 3.16735 3.23255 3.52567 3.58237 3.77861 3.85088 4.03771 4.14732 4.46051 4.54351 4.61037 4.62867 4.67030 4.74523 4.79127 4.81887 5.07343 5.13231 5.26156 5.35745 5.44876 5.71658 5.74477 5.76480 5.86237 6.34234 6.67212 6.82421 6.89979 6.99653 7.54819 8.98729 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.006150 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.013004 B = 4551.726446 C = 4840.557317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.142 4.142 3 C 0.225 3.775 4 H 0.004 0.996 5 C -0.494 4.494 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.942 3.058 10 H -0.285 1.285 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.673 5.673 14 C 0.094 3.906 15 C -0.140 4.140 16 C 0.151 3.849 17 N -0.520 5.520 18 C 0.280 3.720 19 N -0.496 5.496 20 C 0.110 3.890 21 C 0.344 3.656 22 C -0.167 4.167 23 F -0.176 7.176 24 F -0.194 7.194 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.258 0.742 31 H 0.340 0.660 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.173 0.827 35 H 0.238 0.762 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 6.468 13.447 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.182 4.182 3 C 0.117 3.883 4 H 0.022 0.978 5 C -0.533 4.533 6 H 0.065 0.935 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.769 3.231 10 H -0.211 1.211 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.305 5.305 14 C -0.037 4.037 15 C -0.145 4.145 16 C -0.016 4.016 17 N -0.233 5.233 18 C -0.007 4.007 19 N -0.209 5.209 20 C -0.038 4.038 21 C 0.307 3.693 22 C -0.225 4.225 23 F -0.156 7.156 24 F -0.175 7.175 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.161 0.839 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.190 0.810 35 H 0.254 0.746 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.277 7.629 13.114 15.342 hybrid contribution -0.978 -1.561 -1.083 2.137 sum 1.300 6.068 12.031 13.537 Atomic orbital electron populations 1.21499 0.96103 0.99742 1.00805 1.21985 0.96313 1.00054 0.99844 1.18989 0.93464 0.88994 0.86899 0.97802 1.21259 1.30234 1.10982 0.90849 0.93536 1.25490 0.95889 0.95802 1.01035 1.69972 1.38756 1.24231 1.22832 0.85799 0.78822 0.78393 0.80064 1.21141 1.20983 1.19531 1.60540 1.04419 1.62659 1.02863 1.20801 0.92603 0.94310 0.96013 1.21708 0.97771 0.97116 0.97874 1.23381 0.88109 0.99689 0.90414 1.68420 1.35486 1.03373 1.16044 1.25704 0.93376 0.92367 0.89269 1.68076 1.01035 1.35709 1.16084 1.21907 0.95565 0.90327 0.96027 1.19386 0.81491 0.93644 0.74780 1.22567 1.05943 0.88588 1.05378 1.93182 1.62774 1.95734 1.63951 1.92996 1.94248 1.79341 1.50878 0.93834 0.93015 0.93870 0.95152 0.91770 0.93290 0.83891 0.89148 0.92892 0.80985 0.74610 0.89201 0.88347 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.37 71.98 0.67 -4.25 16 2 C -0.14 -6.32 5.54 30.59 0.17 -6.15 16 3 C 0.22 10.62 2.12 44.17 0.09 10.72 16 4 H 0.00 0.21 7.14 -2.39 -0.02 0.20 16 5 C -0.49 -26.54 7.41 25.60 0.19 -26.35 16 6 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 7 C 0.02 0.87 5.30 84.65 0.45 1.32 16 8 N -0.92 -51.60 11.33 21.45 0.24 -51.36 16 9 Si 0.94 44.14 29.54 68.60 2.03 46.17 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 N -0.67 -26.79 4.39 -499.44 -2.19 -28.98 16 14 C 0.09 3.14 5.12 85.56 0.44 3.58 16 15 C -0.14 -4.73 5.25 -19.69 -0.10 -4.83 16 16 C 0.15 5.06 10.40 84.71 0.88 5.94 16 17 N -0.52 -16.44 10.44 -200.05 -2.09 -18.53 16 18 C 0.28 7.52 12.29 180.88 2.22 9.74 16 19 N -0.50 -14.23 9.19 -188.09 -1.73 -15.96 16 20 C 0.11 3.49 6.19 42.56 0.26 3.76 16 21 C 0.34 9.90 1.84 29.85 0.05 9.95 16 22 C -0.17 -3.56 8.62 71.98 0.62 -2.94 16 23 F -0.18 -6.04 14.68 44.97 0.66 -5.38 16 24 F -0.19 -5.39 15.47 44.97 0.70 -4.69 16 25 H 0.04 1.94 6.96 -2.39 -0.02 1.92 16 26 H 0.05 1.79 6.56 -2.38 -0.02 1.77 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 1.20 7.54 -2.39 -0.02 1.18 16 29 H 0.06 3.30 6.11 -2.38 -0.01 3.28 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.34 12.91 6.52 -89.69 -0.58 12.33 16 32 H 0.09 2.73 6.35 -2.39 -0.02 2.71 16 33 H 0.05 1.73 7.11 -2.39 -0.02 1.71 16 34 H 0.17 5.50 8.06 -2.91 -0.02 5.48 16 35 H 0.24 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.09 1.97 8.11 -2.39 -0.02 1.95 16 37 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.10 1.91 8.03 -2.39 -0.02 1.89 16 Total: -1.00 -61.53 314.76 4.08 -57.45 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.50 Total: 20.81 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.95 Total: 0.48 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -5.76 Total: -114.83 kcal Atomic # 9 Polarization: -11.43 SS G_CDS: 1.36 Total: -10.08 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.53 4.08 -57.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.859 kcal (2) G-P(sol) polarization free energy of solvation -61.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds