Wall clock time and date at job start Tue Mar 31 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47288 * 2 1 4 4 H 1.08993 * 109.47484 * 306.04360 * 3 2 1 5 5 C 1.50698 * 109.47067 * 186.04037 * 3 2 1 6 6 H 1.07998 * 119.99836 * 244.07397 * 5 3 2 7 7 C 1.37875 * 120.00085 * 64.07226 * 5 3 2 8 8 N 1.31516 * 120.00040 * 194.83580 * 7 5 3 9 9 Si 1.86794 * 119.99857 * 14.83925 * 7 5 3 10 10 H 1.48501 * 109.47650 * 92.65583 * 9 7 5 11 11 H 1.48498 * 109.47256 * 212.65583 * 9 7 5 12 12 H 1.48502 * 109.47210 * 332.65487 * 9 7 5 13 13 N 1.46909 * 109.46665 * 66.04187 * 3 2 1 14 14 C 1.46894 * 110.99950 * 260.87712 * 13 3 2 15 15 C 1.50695 * 109.47120 * 186.01649 * 14 13 3 16 16 C 1.38620 * 120.80210 * 102.36889 * 15 14 13 17 17 N 1.32318 * 119.10610 * 179.97438 * 16 15 14 18 18 C 1.31814 * 120.81685 * 359.97438 * 17 16 15 19 19 N 1.31772 * 121.75442 * 0.02562 * 18 17 16 20 20 C 1.32358 * 120.82151 * 359.97438 * 19 18 17 21 21 C 1.50690 * 120.44813 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47467 * 357.00166 * 21 20 19 23 23 F 1.39901 * 109.47350 * 117.00165 * 21 20 19 24 24 F 1.39906 * 109.47122 * 237.00336 * 21 20 19 25 25 H 1.08996 * 109.47569 * 181.23414 * 1 2 3 26 26 H 1.09005 * 109.47181 * 301.23791 * 1 2 3 27 27 H 1.09002 * 109.47000 * 61.23737 * 1 2 3 28 28 H 1.09004 * 109.46808 * 240.00616 * 2 1 3 29 29 H 1.08998 * 109.47078 * 120.00646 * 2 1 3 30 30 H 0.97001 * 119.99497 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99305 * 136.92809 * 13 3 2 32 32 H 1.09003 * 109.47070 * 66.01918 * 14 13 3 33 33 H 1.09001 * 109.47141 * 306.01613 * 14 13 3 34 34 H 1.07998 * 120.44681 * 0.25428 * 16 15 14 35 35 H 1.07995 * 119.11963 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47073 * 59.99997 * 22 21 20 37 37 H 1.08993 * 109.47509 * 180.02562 * 22 21 20 38 38 H 1.09005 * 109.46987 * 300.00222 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9866 -0.8309 5 6 3.5396 1.4450 -0.1495 6 1 4.1611 1.8251 0.6478 7 6 4.1181 0.9621 -1.3041 8 7 5.4045 0.6900 -1.3310 9 14 3.0748 0.6945 -2.8302 10 1 3.1188 1.9116 -3.6799 11 1 3.6045 -0.4627 -3.5953 12 1 1.6713 0.4217 -2.4287 13 7 1.6730 2.0915 1.2658 14 6 0.4709 2.9201 1.1033 15 6 0.2109 3.6831 2.3765 16 6 0.5395 5.0258 2.4792 17 7 0.2960 5.6632 3.6128 18 6 -0.2520 5.0372 4.6352 19 7 -0.5775 3.7618 4.5739 20 6 -0.3636 3.0595 3.4726 21 6 -0.7386 1.6013 3.4120 22 6 -1.2778 1.1562 4.7729 23 9 -1.7233 1.4132 2.4362 24 9 0.3909 0.8424 3.0870 25 1 -0.3634 -1.0274 0.0221 26 1 -0.3634 0.5330 0.8787 27 1 -0.3633 0.4945 -0.9009 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.8114 0.3500 -2.1432 31 1 2.4410 2.6359 1.6289 32 1 -0.3837 2.2809 0.8818 33 1 0.6218 3.6222 0.2833 34 1 0.9842 5.5458 1.6436 35 1 -0.4391 5.5842 5.5474 36 1 -2.1578 1.7474 5.0261 37 1 -1.5486 0.1013 4.7292 38 1 -0.5105 1.3027 5.5333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:46 Heat of formation + Delta-G solvation = -40.264601 kcal Electronic energy + Delta-G solvation = -23864.921434 eV Core-core repulsion = 20185.850221 eV Total energy + Delta-G solvation = -3679.071213 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.87070 -46.72761 -41.20856 -36.83723 -34.60656 -33.78302 -32.06086 -31.15811 -30.33522 -27.67739 -25.68261 -25.19485 -22.66150 -22.06219 -21.84676 -19.67900 -18.25912 -17.96369 -17.32891 -17.03054 -15.98271 -15.50820 -15.40593 -14.91601 -14.40111 -13.98846 -13.84447 -13.80602 -13.59467 -13.13343 -12.91017 -12.83045 -12.69132 -12.49382 -12.29803 -12.07661 -11.69389 -11.60005 -11.21700 -11.11491 -10.97603 -10.81485 -10.67796 -10.22244 -9.85015 -9.61611 -9.40044 -9.29498 -9.13990 -8.48081 -7.52045 -6.15904 -4.11997 0.62844 0.79947 3.21526 3.25022 3.35390 3.39008 3.50359 3.96558 4.01711 4.14493 4.37923 4.49974 4.64268 4.77029 4.85387 5.13907 5.14518 5.27105 5.42471 5.52877 5.68993 5.85318 5.91008 5.95054 6.11467 6.13756 6.17236 6.33672 6.66118 6.69420 6.83028 7.03210 7.07761 7.44352 7.62493 7.82183 7.89123 8.24956 8.54353 8.91627 9.49492 10.96839 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.005840 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.137038 B = 4793.643437 C = 5454.176909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C 0.195 3.805 4 H 0.004 0.996 5 C -0.533 4.533 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.661 5.661 14 C 0.083 3.917 15 C -0.139 4.139 16 C 0.154 3.846 17 N -0.507 5.507 18 C 0.283 3.717 19 N -0.495 5.495 20 C 0.124 3.876 21 C 0.348 3.652 22 C -0.177 4.177 23 F -0.190 7.190 24 F -0.149 7.149 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.264 0.736 31 H 0.338 0.662 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.174 0.826 35 H 0.201 0.799 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.296 5.089 9.920 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C 0.086 3.914 4 H 0.021 0.979 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.689 3.311 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.292 5.292 14 C -0.047 4.047 15 C -0.144 4.144 16 C -0.013 4.013 17 N -0.220 5.220 18 C -0.005 4.005 19 N -0.208 5.208 20 C -0.025 4.025 21 C 0.310 3.690 22 C -0.234 4.234 23 F -0.171 7.171 24 F -0.129 7.129 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.157 0.843 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.192 0.808 35 H 0.217 0.783 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.650 4.936 10.852 18.888 hybrid contribution 0.235 0.179 -2.332 2.350 sum -14.416 5.115 8.520 17.509 Atomic orbital electron populations 1.22030 0.98655 0.99882 1.00864 1.21817 0.92707 0.99041 1.00812 1.19486 0.95587 0.91005 0.85316 0.97870 1.21171 0.89313 1.43202 1.03365 0.90648 1.24883 0.94746 0.94044 0.98757 1.69979 1.11448 1.43133 1.28073 0.87219 0.82532 0.77877 0.83482 1.20872 1.21286 1.17234 1.60774 1.05352 1.32234 1.30889 1.21252 0.98029 0.95215 0.90201 1.21771 0.97717 0.96369 0.98516 1.23332 0.91894 0.90726 0.95356 1.68409 1.12471 1.40250 1.00835 1.24937 0.91062 0.87289 0.97190 1.68043 1.17933 1.09026 1.25842 1.21788 0.94799 0.95997 0.89879 1.19071 0.76644 0.85502 0.87770 1.22591 1.04013 1.03134 0.93697 1.93010 1.62559 1.95677 1.65848 1.93280 1.50554 1.75702 1.93378 0.94657 0.91752 0.94690 0.93278 0.92090 0.92617 0.84343 0.88980 0.93917 0.80848 0.78306 0.89290 0.90065 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.15 37.16 0.34 -2.62 16 2 C -0.11 -2.32 4.84 -26.73 -0.13 -2.45 16 3 C 0.19 4.41 1.75 -68.86 -0.12 4.29 16 4 H 0.00 0.09 6.24 -51.93 -0.32 -0.24 16 5 C -0.53 -14.37 9.02 -34.44 -0.31 -14.68 16 6 H 0.08 2.21 7.70 -52.49 -0.40 1.80 16 7 C 0.08 2.21 5.33 -17.82 -0.09 2.12 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 9 Si 0.86 20.80 25.75 -169.99 -4.38 16.43 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.67 5.44 56.52 0.31 -5.36 16 13 N -0.66 -12.83 4.27 -109.22 -0.47 -13.29 16 14 C 0.08 1.35 4.56 -4.98 -0.02 1.33 16 15 C -0.14 -2.01 5.33 -104.36 -0.56 -2.57 16 16 C 0.15 1.99 10.97 -17.20 -0.19 1.80 16 17 N -0.51 -6.44 10.44 -14.58 -0.15 -6.59 16 18 C 0.28 3.23 12.29 -92.16 -1.13 2.10 16 19 N -0.50 -6.32 9.18 -10.80 -0.10 -6.42 16 20 C 0.12 1.76 6.19 -82.25 -0.51 1.25 16 21 C 0.35 4.91 1.80 -27.89 -0.05 4.86 16 22 C -0.18 -1.91 8.62 37.16 0.32 -1.59 16 23 F -0.19 -2.80 14.08 2.25 0.03 -2.77 16 24 F -0.15 -2.52 13.42 2.25 0.03 -2.49 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.16 2.95 -51.93 -0.15 1.00 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.14 4.85 -51.93 -0.25 0.88 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.34 6.75 7.86 -39.29 -0.31 6.44 16 32 H 0.09 1.54 4.06 -51.93 -0.21 1.33 16 33 H 0.04 0.67 7.82 -51.93 -0.41 0.26 16 34 H 0.17 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -30.25 305.24 -6.78 -37.02 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.66 Total: 5.49 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.45 Total: -6.16 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.06 Total: -52.13 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.06 Total: -5.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.38 Total: 16.43 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.25 -6.78 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.240 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds