Wall clock time and date at job start Tue Mar 31 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47288 * 2 1 4 4 H 1.08993 * 109.47484 * 306.04360 * 3 2 1 5 5 C 1.50698 * 109.47067 * 186.04037 * 3 2 1 6 6 H 1.07998 * 119.99836 * 244.07397 * 5 3 2 7 7 C 1.37875 * 120.00085 * 64.07226 * 5 3 2 8 8 N 1.31516 * 120.00040 * 194.83580 * 7 5 3 9 9 Si 1.86794 * 119.99857 * 14.83925 * 7 5 3 10 10 H 1.48501 * 109.47650 * 92.65583 * 9 7 5 11 11 H 1.48498 * 109.47256 * 212.65583 * 9 7 5 12 12 H 1.48502 * 109.47210 * 332.65487 * 9 7 5 13 13 N 1.46909 * 109.46665 * 66.04187 * 3 2 1 14 14 C 1.46894 * 110.99950 * 260.87712 * 13 3 2 15 15 C 1.50695 * 109.47120 * 186.01649 * 14 13 3 16 16 C 1.38620 * 120.80210 * 102.36889 * 15 14 13 17 17 N 1.32318 * 119.10610 * 179.97438 * 16 15 14 18 18 C 1.31814 * 120.81685 * 359.97438 * 17 16 15 19 19 N 1.31772 * 121.75442 * 0.02562 * 18 17 16 20 20 C 1.32358 * 120.82151 * 359.97438 * 19 18 17 21 21 C 1.50690 * 120.44813 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47467 * 357.00166 * 21 20 19 23 23 F 1.39901 * 109.47350 * 117.00165 * 21 20 19 24 24 F 1.39906 * 109.47122 * 237.00336 * 21 20 19 25 25 H 1.08996 * 109.47569 * 181.23414 * 1 2 3 26 26 H 1.09005 * 109.47181 * 301.23791 * 1 2 3 27 27 H 1.09002 * 109.47000 * 61.23737 * 1 2 3 28 28 H 1.09004 * 109.46808 * 240.00616 * 2 1 3 29 29 H 1.08998 * 109.47078 * 120.00646 * 2 1 3 30 30 H 0.97001 * 119.99497 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99305 * 136.92809 * 13 3 2 32 32 H 1.09003 * 109.47070 * 66.01918 * 14 13 3 33 33 H 1.09001 * 109.47141 * 306.01613 * 14 13 3 34 34 H 1.07998 * 120.44681 * 0.25428 * 16 15 14 35 35 H 1.07995 * 119.11963 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47073 * 59.99997 * 22 21 20 37 37 H 1.08993 * 109.47509 * 180.02562 * 22 21 20 38 38 H 1.09005 * 109.46987 * 300.00222 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9866 -0.8309 5 6 3.5396 1.4450 -0.1495 6 1 4.1611 1.8251 0.6478 7 6 4.1181 0.9621 -1.3041 8 7 5.4045 0.6900 -1.3310 9 14 3.0748 0.6945 -2.8302 10 1 3.1188 1.9116 -3.6799 11 1 3.6045 -0.4627 -3.5953 12 1 1.6713 0.4217 -2.4287 13 7 1.6730 2.0915 1.2658 14 6 0.4709 2.9201 1.1033 15 6 0.2109 3.6831 2.3765 16 6 0.5395 5.0258 2.4792 17 7 0.2960 5.6632 3.6128 18 6 -0.2520 5.0372 4.6352 19 7 -0.5775 3.7618 4.5739 20 6 -0.3636 3.0595 3.4726 21 6 -0.7386 1.6013 3.4120 22 6 -1.2778 1.1562 4.7729 23 9 -1.7233 1.4132 2.4362 24 9 0.3909 0.8424 3.0870 25 1 -0.3634 -1.0274 0.0221 26 1 -0.3634 0.5330 0.8787 27 1 -0.3633 0.4945 -0.9009 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.8114 0.3500 -2.1432 31 1 2.4410 2.6359 1.6289 32 1 -0.3837 2.2809 0.8818 33 1 0.6218 3.6222 0.2833 34 1 0.9842 5.5458 1.6436 35 1 -0.4391 5.5842 5.5474 36 1 -2.1578 1.7474 5.0261 37 1 -1.5486 0.1013 4.7292 38 1 -0.5105 1.3027 5.5333 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163622.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:46 Heat of formation + Delta-G solvation = -59.427423 kcal Electronic energy + Delta-G solvation = -23865.752397 eV Core-core repulsion = 20185.850221 eV Total energy + Delta-G solvation = -3679.902176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.00114 -47.89291 -42.20676 -38.44411 -35.61266 -35.23314 -33.96479 -32.34549 -31.57612 -29.35311 -26.67699 -26.58177 -24.34310 -23.27423 -22.95218 -21.45545 -19.31854 -19.04416 -18.93631 -18.44342 -17.34539 -16.94329 -16.39630 -16.13674 -15.78919 -15.68784 -15.25543 -14.79332 -14.76781 -14.76153 -14.33533 -14.18348 -13.96896 -13.76480 -13.45063 -13.36107 -13.18308 -13.01792 -12.71560 -12.66270 -12.28492 -12.22704 -11.96268 -11.80986 -11.63672 -11.18763 -11.06198 -10.68657 -10.56158 -10.39932 -9.09163 -8.32223 -6.32097 -0.40767 -0.19423 1.33678 1.38234 1.48421 2.19475 2.34800 2.51390 3.02621 3.03847 3.10857 3.13374 3.40846 3.46589 3.76652 3.78841 3.92306 4.10580 4.44348 4.49477 4.54507 4.57046 4.64280 4.70778 4.77664 4.78578 4.92404 5.05745 5.20674 5.23132 5.27916 5.44013 5.56636 5.69777 5.82034 5.99128 6.45331 6.63154 6.82669 6.85339 7.33573 8.84104 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.005840 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.137038 B = 4793.643437 C = 5454.176909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C 0.202 3.798 4 H 0.007 0.993 5 C -0.533 4.533 6 H 0.037 0.963 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.924 3.076 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.225 1.225 13 N -0.661 5.661 14 C 0.089 3.911 15 C -0.158 4.158 16 C 0.158 3.842 17 N -0.516 5.516 18 C 0.288 3.712 19 N -0.497 5.497 20 C 0.117 3.883 21 C 0.337 3.663 22 C -0.169 4.169 23 F -0.195 7.195 24 F -0.170 7.170 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.265 0.735 31 H 0.332 0.668 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.191 0.809 35 H 0.239 0.761 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.780 5.827 10.306 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C 0.092 3.908 4 H 0.024 0.976 5 C -0.571 4.571 6 H 0.055 0.945 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.148 1.148 13 N -0.291 5.291 14 C -0.041 4.041 15 C -0.163 4.163 16 C -0.009 4.009 17 N -0.229 5.229 18 C 0.001 3.999 19 N -0.210 5.210 20 C -0.031 4.031 21 C 0.300 3.700 22 C -0.226 4.226 23 F -0.176 7.176 24 F -0.151 7.151 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.208 0.792 35 H 0.255 0.745 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.166 5.686 11.260 21.303 hybrid contribution 1.038 0.033 -2.304 2.527 sum -16.129 5.718 8.956 19.315 Atomic orbital electron populations 1.21949 0.95820 1.01317 1.01624 1.21722 0.95202 0.97932 0.99424 1.19311 0.92532 0.92042 0.86874 0.97584 1.21467 0.91596 1.41922 1.02123 0.94478 1.25722 0.95810 0.94006 1.02017 1.70116 1.13577 1.45155 1.29033 0.86216 0.81923 0.77759 0.79266 1.20261 1.21461 1.14798 1.60681 1.06116 1.33307 1.29014 1.21161 0.96151 0.95078 0.91735 1.21610 0.99674 0.97004 0.98015 1.23617 0.91004 0.90240 0.96051 1.68518 1.12979 1.40331 1.01038 1.25796 0.89138 0.86969 0.97981 1.68132 1.18271 1.09532 1.25054 1.21891 0.94752 0.96210 0.90288 1.19479 0.76042 0.85514 0.88963 1.22586 1.04353 1.04090 0.91619 1.92989 1.62582 1.95711 1.66304 1.93232 1.51861 1.76295 1.93679 0.92949 0.91094 0.93834 0.94497 0.93729 0.92583 0.85035 0.89205 0.93091 0.79177 0.74475 0.88017 0.88855 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.15 71.98 0.66 -4.66 16 2 C -0.10 -4.51 4.84 30.59 0.15 -4.36 16 3 C 0.20 9.07 1.75 44.17 0.08 9.15 16 4 H 0.01 0.29 6.24 -2.39 -0.01 0.28 16 5 C -0.53 -29.47 9.02 25.60 0.23 -29.23 16 6 H 0.04 2.28 7.70 -2.91 -0.02 2.25 16 7 C 0.02 1.32 5.33 84.65 0.45 1.77 16 8 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16 9 Si 0.92 42.86 25.75 68.60 1.77 44.63 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.23 -9.52 5.44 99.48 0.54 -8.97 16 13 N -0.66 -25.54 4.27 -499.47 -2.13 -27.68 16 14 C 0.09 2.78 4.56 85.56 0.39 3.17 16 15 C -0.16 -4.36 5.33 -19.69 -0.10 -4.46 16 16 C 0.16 3.80 10.97 84.71 0.93 4.73 16 17 N -0.52 -11.87 10.44 -200.05 -2.09 -13.96 16 18 C 0.29 5.75 12.29 180.88 2.22 7.97 16 19 N -0.50 -11.49 9.18 -188.09 -1.73 -13.22 16 20 C 0.12 3.14 6.19 42.56 0.26 3.40 16 21 C 0.34 9.05 1.80 29.85 0.05 9.11 16 22 C -0.17 -3.31 8.62 71.98 0.62 -2.69 16 23 F -0.19 -5.42 14.08 44.97 0.63 -4.79 16 24 F -0.17 -5.66 13.42 44.97 0.60 -5.05 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 2.42 2.95 -2.38 -0.01 2.42 16 27 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.66 4.85 -2.38 -0.01 1.65 16 29 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.33 13.51 7.86 -89.69 -0.71 12.80 16 32 H 0.09 2.86 4.06 -2.39 -0.01 2.85 16 33 H 0.05 1.51 7.82 -2.39 -0.02 1.49 16 34 H 0.19 3.75 8.06 -2.91 -0.02 3.72 16 35 H 0.24 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.10 1.72 8.04 -2.39 -0.02 1.70 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.79 8.11 -2.38 -0.02 1.77 16 Total: -1.00 -65.96 305.24 3.53 -62.44 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.23 Total: 21.31 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.94 Total: -6.12 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -5.65 Total: -112.42 kcal Atomic # 9 Polarization: -11.08 SS G_CDS: 1.24 Total: -9.84 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.77 Total: 44.63 kcal Total: -65.96 3.53 -62.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163622.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.012 kcal (2) G-P(sol) polarization free energy of solvation -65.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds