Wall clock time and date at job start Tue Mar 31 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 7 7 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 8 8 C 1.53005 * 109.47219 * 180.02562 * 7 5 3 9 9 C 1.52994 * 109.46906 * 59.99762 * 8 7 5 10 10 H 1.09005 * 109.46734 * 180.02562 * 9 8 7 11 11 N 1.46494 * 109.47618 * 60.00244 * 9 8 7 12 12 C 1.36939 * 120.00186 * 84.99405 * 11 9 8 13 13 H 1.08000 * 119.99616 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00494 * 180.02562 * 12 11 9 15 15 N 1.31617 * 119.99497 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00209 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47149 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47007 * 120.00132 * 16 14 12 19 19 H 1.48506 * 109.47127 * 240.00047 * 16 14 12 20 20 C 1.52998 * 109.47366 * 299.99803 * 9 8 7 21 21 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 22 22 H 1.09005 * 109.47124 * 59.99773 * 21 5 3 23 23 C 1.50702 * 109.47135 * 299.99767 * 21 5 3 24 24 O 1.20826 * 120.00087 * 0.02562 * 23 21 5 25 25 O 1.34224 * 120.00167 * 179.97438 * 23 21 5 26 26 C 1.45196 * 117.00071 * 179.97438 * 25 23 21 27 27 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 28 28 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 29 29 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46932 * 299.99942 * 7 5 3 31 31 H 1.08998 * 109.47453 * 59.99968 * 7 5 3 32 32 H 1.08999 * 109.46783 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46608 * 299.99989 * 8 7 5 34 34 H 0.97003 * 120.00146 * 265.00150 * 11 9 8 35 35 H 0.97008 * 120.00038 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47444 * 180.02562 * 20 9 8 37 37 H 1.09000 * 109.47603 * 300.00663 * 20 9 8 38 38 H 1.08995 * 109.47432 * 300.00375 * 26 25 23 39 39 H 1.09000 * 109.47106 * 60.00812 * 26 25 23 40 40 H 1.09000 * 109.47151 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.1128 0.5816 1.2502 8 6 5.6408 0.6622 1.2512 9 6 6.0740 2.1295 1.2514 10 1 7.1625 2.1870 1.2516 11 7 5.5493 2.7936 2.4471 12 6 6.2407 2.7256 3.6272 13 1 7.1731 2.1827 3.6761 14 6 5.7433 3.3543 4.7604 15 7 4.6068 4.0154 4.7007 16 14 6.6869 3.2621 6.3698 17 1 7.9243 2.4650 6.1732 18 1 7.0459 4.6334 6.8124 19 1 5.8403 2.6140 7.4036 20 6 5.5275 2.8229 0.0018 21 6 4.0001 2.7421 0.0011 22 1 3.6100 3.2360 0.8911 23 6 3.4618 3.4255 -1.2294 24 8 2.7987 2.8031 -2.0250 25 8 3.7180 4.7260 -1.4412 26 6 3.1681 5.3183 -2.6474 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7227 1.0759 2.1399 31 1 3.8038 -0.4637 1.2503 32 1 6.0300 0.1686 2.1416 33 1 6.0312 0.1682 0.3614 34 1 4.7119 3.2813 2.4031 35 1 4.2589 4.4544 5.4927 36 1 5.8365 3.8681 0.0017 37 1 5.9179 2.3289 -0.8880 38 1 3.5608 4.7965 -3.5201 39 1 2.0815 5.2327 -2.6315 40 1 3.4493 6.3702 -2.6965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257715261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:57 Heat of formation + Delta-G solvation = -167.501661 kcal Electronic energy + Delta-G solvation = -24197.771313 eV Core-core repulsion = 20591.977451 eV Total energy + Delta-G solvation = -3605.793862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04452 -39.78340 -38.11375 -36.41687 -35.93126 -33.72344 -31.40343 -31.11943 -28.76032 -27.64230 -27.35761 -24.25575 -23.41364 -22.79718 -21.10377 -20.07904 -18.77596 -17.56623 -17.32879 -17.08279 -16.74783 -16.34469 -16.12102 -15.66012 -14.71456 -14.27483 -13.96015 -13.73579 -13.58034 -13.33309 -13.04184 -12.71863 -12.53973 -12.35215 -12.22046 -11.89151 -11.81786 -11.71578 -11.12221 -10.89131 -10.80340 -10.68600 -10.64817 -10.55388 -10.39246 -10.25764 -10.07915 -9.98593 -9.60802 -9.58102 -8.90388 -6.98125 -5.77021 -3.06448 2.46604 2.58288 2.88706 2.92417 3.43273 3.49045 3.51352 4.58298 4.60130 4.87937 4.90899 5.18276 5.19571 5.22991 5.26341 5.27979 5.38465 5.46384 5.52742 5.55381 5.58061 5.62753 5.66733 5.77663 5.89988 5.99067 6.21220 6.26025 6.44604 6.55813 6.59288 6.64615 6.71842 6.85945 6.94996 7.70849 7.96496 8.04688 8.40699 9.52228 10.08113 10.42189 11.45317 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.005723 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.105253 B = 4891.479639 C = 5650.002158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.475 3.525 4 O -0.504 6.504 5 C -0.057 4.057 6 H 0.110 0.890 7 C -0.103 4.103 8 C -0.135 4.135 9 C 0.174 3.826 10 H 0.059 0.941 11 N -0.722 5.722 12 C -0.239 4.239 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.931 5.931 16 Si 0.905 3.095 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.293 1.293 20 C -0.113 4.113 21 C -0.063 4.063 22 H 0.126 0.874 23 C 0.478 3.522 24 O -0.514 6.514 25 O -0.352 6.352 26 C 0.037 3.963 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -5.179 -13.195 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.318 3.682 4 O -0.390 6.390 5 C -0.077 4.077 6 H 0.128 0.872 7 C -0.141 4.141 8 C -0.175 4.175 9 C 0.063 3.937 10 H 0.077 0.923 11 N -0.364 5.364 12 C -0.370 4.370 13 H 0.090 0.910 14 C -0.208 4.208 15 N -0.579 5.579 16 Si 0.736 3.264 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.220 1.220 20 C -0.151 4.151 21 C -0.082 4.082 22 H 0.143 0.857 23 C 0.322 3.678 24 O -0.402 6.402 25 O -0.269 6.269 26 C -0.057 4.057 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.380 -5.050 -13.315 14.636 hybrid contribution -0.359 0.290 0.719 0.854 sum -3.738 -4.760 -12.596 13.975 Atomic orbital electron populations 1.23194 0.76940 1.03184 1.02419 1.86476 1.22966 1.33665 1.84476 1.23599 0.91870 0.81209 0.71520 1.90632 1.67106 1.36335 1.44970 1.20952 0.87180 0.96318 1.03214 0.87235 1.21461 0.97417 0.99772 0.95412 1.22210 0.94045 1.00152 1.01127 1.20251 0.97052 0.90180 0.86184 0.92303 1.42510 1.26672 1.61934 1.05307 1.19263 1.03212 1.27323 0.87179 0.90995 1.24733 0.97462 1.00592 0.98043 1.69667 1.20512 1.38904 1.28807 0.86155 0.78909 0.77143 0.84172 1.20585 1.21964 1.22006 1.21869 0.90359 1.03198 0.99715 1.20944 0.98691 0.93213 0.95357 0.85653 1.23690 0.76615 0.80368 0.87167 1.90592 1.36869 1.65843 1.46945 1.86544 1.70492 1.26104 1.43721 1.23197 0.99243 0.98229 0.85065 0.91967 0.92213 0.88442 0.89614 0.91206 0.90978 0.93102 0.78182 0.93539 0.89730 0.91524 0.92281 0.92139 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.36 -5.54 10.47 -39.27 -0.41 -5.96 16 3 C 0.48 8.35 6.25 36.01 0.23 8.57 16 4 O -0.50 -10.17 13.91 -25.90 -0.36 -10.53 16 5 C -0.06 -0.91 1.81 -91.77 -0.17 -1.08 16 6 H 0.11 1.56 8.10 -51.93 -0.42 1.14 16 7 C -0.10 -1.65 4.98 -26.73 -0.13 -1.78 16 8 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 9 C 0.17 3.10 3.10 -67.94 -0.21 2.89 16 10 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 11 N -0.72 -16.65 4.28 -53.43 -0.23 -16.88 16 12 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 13 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 14 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 15 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 16 Si 0.90 21.83 29.55 -169.99 -5.02 16.80 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 C -0.11 -1.76 4.82 -26.75 -0.13 -1.89 16 21 C -0.06 -1.07 1.64 -91.80 -0.15 -1.22 16 22 H 0.13 2.47 6.46 -51.93 -0.34 2.13 16 23 C 0.48 8.31 6.25 36.01 0.23 8.53 16 24 O -0.51 -9.63 13.91 -25.91 -0.36 -9.99 16 25 O -0.35 -5.69 10.47 -39.24 -0.41 -6.10 16 26 C 0.04 0.44 10.56 101.05 1.07 1.51 16 27 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.65 7.60 -51.93 -0.39 1.26 16 31 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.38 9.56 6.06 -40.82 -0.25 9.31 16 35 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -32.36 329.87 -5.71 -38.07 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.01 Total: 8.33 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 1.40 Total: 7.95 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.50 Total: -43.55 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.54 Total: -32.58 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.36 -5.71 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257715261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.436 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds