Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 7 7 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 8 8 C 1.53005 * 109.47219 * 180.02562 * 7 5 3 9 9 C 1.52994 * 109.46906 * 59.99762 * 8 7 5 10 10 H 1.09005 * 109.46734 * 180.02562 * 9 8 7 11 11 N 1.46494 * 109.47618 * 60.00244 * 9 8 7 12 12 C 1.36939 * 120.00186 * 84.99405 * 11 9 8 13 13 H 1.08000 * 119.99616 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00494 * 180.02562 * 12 11 9 15 15 N 1.31617 * 119.99497 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00209 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47149 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47007 * 120.00132 * 16 14 12 19 19 H 1.48506 * 109.47127 * 240.00047 * 16 14 12 20 20 C 1.52998 * 109.47366 * 299.99803 * 9 8 7 21 21 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 22 22 H 1.09005 * 109.47124 * 59.99773 * 21 5 3 23 23 C 1.50702 * 109.47135 * 299.99767 * 21 5 3 24 24 O 1.20826 * 120.00087 * 0.02562 * 23 21 5 25 25 O 1.34224 * 120.00167 * 179.97438 * 23 21 5 26 26 C 1.45196 * 117.00071 * 179.97438 * 25 23 21 27 27 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 28 28 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 29 29 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46932 * 299.99942 * 7 5 3 31 31 H 1.08998 * 109.47453 * 59.99968 * 7 5 3 32 32 H 1.08999 * 109.46783 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46608 * 299.99989 * 8 7 5 34 34 H 0.97003 * 120.00146 * 265.00150 * 11 9 8 35 35 H 0.97008 * 120.00038 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47444 * 180.02562 * 20 9 8 37 37 H 1.09000 * 109.47603 * 300.00663 * 20 9 8 38 38 H 1.08995 * 109.47432 * 300.00375 * 26 25 23 39 39 H 1.09000 * 109.47106 * 60.00812 * 26 25 23 40 40 H 1.09000 * 109.47151 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.1128 0.5816 1.2502 8 6 5.6408 0.6622 1.2512 9 6 6.0740 2.1295 1.2514 10 1 7.1625 2.1870 1.2516 11 7 5.5493 2.7936 2.4471 12 6 6.2407 2.7256 3.6272 13 1 7.1731 2.1827 3.6761 14 6 5.7433 3.3543 4.7604 15 7 4.6068 4.0154 4.7007 16 14 6.6869 3.2621 6.3698 17 1 7.9243 2.4650 6.1732 18 1 7.0459 4.6334 6.8124 19 1 5.8403 2.6140 7.4036 20 6 5.5275 2.8229 0.0018 21 6 4.0001 2.7421 0.0011 22 1 3.6100 3.2360 0.8911 23 6 3.4618 3.4255 -1.2294 24 8 2.7987 2.8031 -2.0250 25 8 3.7180 4.7260 -1.4412 26 6 3.1681 5.3183 -2.6474 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7227 1.0759 2.1399 31 1 3.8038 -0.4637 1.2503 32 1 6.0300 0.1686 2.1416 33 1 6.0312 0.1682 0.3614 34 1 4.7119 3.2813 2.4031 35 1 4.2589 4.4544 5.4927 36 1 5.8365 3.8681 0.0017 37 1 5.9179 2.3289 -0.8880 38 1 3.5608 4.7965 -3.5201 39 1 2.0815 5.2327 -2.6315 40 1 3.4493 6.3702 -2.6965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257715261.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -187.242297 kcal Electronic energy + Delta-G solvation = -24198.627331 eV Core-core repulsion = 20591.977451 eV Total energy + Delta-G solvation = -3606.649880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.36992 -41.07571 -39.47234 -37.73661 -37.25542 -35.49682 -33.12838 -32.41629 -30.39248 -28.75840 -28.44266 -25.84990 -25.02575 -24.15260 -22.37377 -21.41514 -20.20558 -19.24307 -18.64861 -18.56048 -18.07509 -17.65743 -17.38912 -16.92217 -16.46708 -15.58584 -15.49696 -15.29729 -14.89793 -14.66295 -14.39751 -13.99479 -13.93194 -13.61777 -13.47602 -13.34314 -12.98267 -12.90211 -12.82085 -12.61942 -12.37171 -12.22940 -11.90611 -11.86184 -11.81516 -11.76180 -11.68130 -11.40264 -11.31120 -10.97711 -10.78507 -8.90825 -7.85489 -5.12323 1.12011 1.23609 1.51746 1.52502 1.61690 1.70753 1.73087 2.62978 3.29175 3.50888 3.63803 3.65238 3.95163 4.06111 4.15204 4.19571 4.27173 4.28902 4.29217 4.30280 4.34089 4.45670 4.52992 4.62038 4.65336 4.67276 4.93898 5.00169 5.06692 5.27132 5.30418 5.33744 5.37229 5.49378 5.61628 5.65625 6.36625 6.66056 6.73820 7.43166 8.20762 8.41451 9.38314 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.005723 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.105253 B = 4891.479639 C = 5650.002158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.539 6.539 5 C -0.052 4.052 6 H 0.138 0.862 7 C -0.094 4.094 8 C -0.126 4.126 9 C 0.165 3.835 10 H 0.066 0.934 11 N -0.733 5.733 12 C -0.223 4.223 13 H 0.082 0.918 14 C -0.080 4.080 15 N -0.973 5.973 16 Si 0.965 3.035 17 H -0.263 1.263 18 H -0.301 1.301 19 H -0.301 1.301 20 C -0.102 4.102 21 C -0.060 4.060 22 H 0.090 0.910 23 C 0.479 3.521 24 O -0.529 6.529 25 O -0.365 6.365 26 C 0.029 3.971 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.138 0.862 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.370 0.630 35 H 0.246 0.754 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 -6.820 -14.862 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.429 6.429 5 C -0.071 4.071 6 H 0.156 0.844 7 C -0.132 4.132 8 C -0.166 4.166 9 C 0.057 3.943 10 H 0.084 0.916 11 N -0.374 5.374 12 C -0.355 4.355 13 H 0.100 0.900 14 C -0.271 4.271 15 N -0.624 5.624 16 Si 0.796 3.204 17 H -0.187 1.187 18 H -0.228 1.228 19 H -0.229 1.229 20 C -0.140 4.140 21 C -0.080 4.080 22 H 0.108 0.892 23 C 0.324 3.676 24 O -0.419 6.419 25 O -0.281 6.281 26 C -0.064 4.064 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.203 0.797 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.021 -6.736 -15.021 16.586 hybrid contribution -0.812 0.780 1.117 1.586 sum -2.832 -5.956 -13.904 15.389 Atomic orbital electron populations 1.23513 0.75165 1.05728 1.01996 1.86460 1.24733 1.32420 1.83872 1.23974 0.92610 0.81288 0.70603 1.90616 1.67970 1.37566 1.46714 1.20988 0.86342 0.95720 1.04079 0.84442 1.21354 0.97636 1.00454 0.93720 1.22099 0.93566 0.98339 1.02588 1.20556 0.97342 0.91321 0.85079 0.91597 1.42733 1.26099 1.62308 1.06303 1.19683 1.02891 1.24929 0.88010 0.89974 1.25458 0.98631 1.01802 1.01251 1.69835 1.22536 1.41098 1.28975 0.85181 0.78186 0.76599 0.80471 1.18667 1.22833 1.22907 1.21786 0.89248 1.02976 0.99986 1.20859 0.99515 0.93750 0.93864 0.89227 1.23672 0.76278 0.80765 0.86913 1.90572 1.37472 1.66302 1.47553 1.86526 1.70608 1.25519 1.45483 1.23533 0.98866 0.99960 0.84028 0.92704 0.92415 0.84409 0.93736 0.89049 0.92214 0.88824 0.79682 0.94529 0.90585 0.87723 0.91004 0.92870 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -10.58 10.47 -51.46 -0.54 -11.12 16 3 C 0.47 16.33 6.25 71.24 0.45 16.77 16 4 O -0.54 -22.19 13.91 28.82 0.40 -21.79 16 5 C -0.05 -1.59 1.81 -11.54 -0.02 -1.61 16 6 H 0.14 3.43 8.10 -2.39 -0.02 3.41 16 7 C -0.09 -2.88 4.98 30.60 0.15 -2.72 16 8 C -0.13 -3.63 5.61 30.59 0.17 -3.46 16 9 C 0.17 5.60 3.10 44.99 0.14 5.74 16 10 H 0.07 2.17 8.08 -2.38 -0.02 2.15 16 11 N -0.73 -34.02 4.28 -322.96 -1.38 -35.40 16 12 C -0.22 -11.61 9.93 84.03 0.83 -10.77 16 13 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 14 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 15 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 16 Si 0.96 45.48 29.55 68.60 2.03 47.50 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 20 C -0.10 -2.99 4.82 30.58 0.15 -2.84 16 21 C -0.06 -2.02 1.64 -11.56 -0.02 -2.04 16 22 H 0.09 3.70 6.46 -2.38 -0.02 3.68 16 23 C 0.48 16.35 6.25 71.24 0.45 16.80 16 24 O -0.53 -19.29 13.91 28.81 0.40 -18.89 16 25 O -0.37 -11.56 10.47 -51.36 -0.54 -12.10 16 26 C 0.03 0.67 10.56 113.37 1.20 1.86 16 27 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 28 H 0.06 1.35 8.13 -2.39 -0.02 1.34 16 29 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.04 1.74 7.60 -2.38 -0.02 1.72 16 31 H 0.09 2.39 8.11 -2.39 -0.02 2.37 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.37 19.14 6.06 -92.71 -0.56 18.58 16 35 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 36 H 0.08 2.37 8.11 -2.39 -0.02 2.35 16 37 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 39 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 40 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -71.85 329.87 6.29 -65.56 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.48 Total: 29.62 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 5.16 Total: 15.60 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -1.10 Total: -94.39 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.27 Total: -63.90 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.85 6.29 -65.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257715261.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.685 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds