Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00075 * 2 1 4 4 O 1.20826 * 119.99887 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00310 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.47167 * 60.00302 * 5 3 2 7 7 C 1.53005 * 109.47343 * 300.00624 * 5 3 2 8 8 C 1.52998 * 109.47342 * 179.97438 * 7 5 3 9 9 C 1.53004 * 109.46876 * 59.99931 * 8 7 5 10 10 H 1.08998 * 109.46846 * 60.00315 * 9 8 7 11 11 N 1.46504 * 109.46960 * 179.97438 * 9 8 7 12 12 C 1.36935 * 120.00355 * 275.00344 * 11 9 8 13 13 H 1.08001 * 120.00203 * 359.97438 * 12 11 9 14 14 C 1.38812 * 120.00338 * 180.02562 * 12 11 9 15 15 N 1.31622 * 119.99483 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00386 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46927 * 89.99796 * 16 14 12 18 18 H 1.48493 * 109.47226 * 209.99901 * 16 14 12 19 19 H 1.48505 * 109.46966 * 330.00080 * 16 14 12 20 20 C 1.52992 * 109.47319 * 299.99766 * 9 8 7 21 21 C 1.52996 * 109.47607 * 180.02562 * 5 3 2 22 22 H 1.09006 * 109.46938 * 59.99761 * 21 5 3 23 23 C 1.50696 * 109.47298 * 300.00568 * 21 5 3 24 24 O 1.20833 * 119.99655 * 359.97438 * 23 21 5 25 25 O 1.34231 * 120.00640 * 180.27355 * 23 21 5 26 26 C 1.45193 * 117.00126 * 179.71955 * 25 23 21 27 27 H 1.08996 * 109.47143 * 299.99294 * 1 2 3 28 28 H 1.08998 * 109.47055 * 59.99362 * 1 2 3 29 29 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46882 * 299.99673 * 7 5 3 31 31 H 1.09004 * 109.46966 * 59.99462 * 7 5 3 32 32 H 1.08996 * 109.47009 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47126 * 300.00417 * 8 7 5 34 34 H 0.97008 * 119.99476 * 95.00104 * 11 9 8 35 35 H 0.97005 * 119.99476 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47610 * 300.00082 * 20 9 8 37 37 H 1.08998 * 109.47497 * 179.97438 * 20 9 8 38 38 H 1.08997 * 109.47488 * 299.99586 * 26 25 23 39 39 H 1.08997 * 109.47515 * 60.00401 * 26 25 23 40 40 H 1.09007 * 109.46891 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9557 0.7810 -0.8909 7 6 4.1139 0.5810 1.2482 8 6 5.6418 0.6605 1.2473 9 6 6.0760 2.1277 1.2473 10 1 5.6870 2.6217 2.1376 11 7 7.5391 2.2039 1.2470 12 6 8.2285 2.1362 2.4282 13 1 7.6937 2.0271 3.3602 14 6 9.6147 2.2090 2.4280 15 7 10.2665 2.3425 1.2923 16 14 10.5551 2.1174 4.0394 17 1 10.8774 0.7003 4.3445 18 1 11.8135 2.8972 3.9232 19 1 9.7220 2.6818 5.1315 20 6 5.5285 2.8216 -0.0015 21 6 4.0001 2.7421 0.0002 22 1 3.6107 3.2356 0.8907 23 6 3.4607 3.4261 -1.2295 24 8 2.7977 2.8037 -2.0252 25 8 3.7218 4.7252 -1.4440 26 6 3.1752 5.3166 -2.6521 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7246 1.0748 2.1385 31 1 3.8048 -0.4643 1.2481 32 1 6.0319 0.1666 2.1372 33 1 6.0308 0.1665 0.3570 34 1 8.0194 2.3023 0.4100 35 1 11.2352 2.3930 1.2921 36 1 5.9176 2.3275 -0.8918 37 1 5.8375 3.8668 -0.0013 38 1 3.5671 4.7915 -3.5232 39 1 2.0884 5.2350 -2.6372 40 1 3.4595 6.3677 -2.7028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257715280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -171.101063 kcal Electronic energy + Delta-G solvation = -23623.764627 eV Core-core repulsion = 20017.814683 eV Total energy + Delta-G solvation = -3605.949944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19444 -39.95609 -38.08489 -36.56197 -36.10404 -34.12552 -31.49639 -31.26696 -28.84472 -27.70949 -27.40846 -24.47980 -23.36603 -22.39282 -21.28173 -20.04914 -19.64082 -17.58291 -17.44315 -17.12682 -16.96634 -16.50261 -16.30192 -15.82359 -14.77043 -14.29273 -14.04418 -13.86900 -13.65512 -13.50988 -13.08014 -12.92768 -12.73202 -12.48912 -12.32433 -12.08743 -11.88533 -11.55835 -11.23050 -10.97897 -10.88432 -10.83082 -10.81977 -10.70084 -10.50788 -10.26602 -10.22744 -10.17669 -9.77865 -9.62178 -8.91025 -6.99707 -5.78599 -3.07965 2.27110 2.40034 2.68685 2.77456 3.42903 3.48404 3.49891 4.38047 4.56947 4.70929 4.72104 5.00761 5.03462 5.09042 5.11256 5.17077 5.21091 5.29324 5.38575 5.44808 5.46996 5.52109 5.61479 5.67005 5.82166 5.93693 6.04441 6.20839 6.32834 6.39421 6.43824 6.46544 6.58573 6.85028 7.02045 7.68679 7.76966 7.87506 8.39509 9.51114 10.07143 10.41885 11.43915 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.004522 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.512997 B = 6189.965721 C = 7329.115562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.476 3.524 4 O -0.508 6.508 5 C -0.063 4.063 6 H 0.117 0.883 7 C -0.107 4.107 8 C -0.138 4.138 9 C 0.179 3.821 10 H 0.053 0.947 11 N -0.723 5.723 12 C -0.240 4.240 13 H 0.072 0.928 14 C -0.012 4.012 15 N -0.932 5.932 16 Si 0.906 3.094 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.115 4.115 21 C -0.060 4.060 22 H 0.117 0.883 23 C 0.478 3.522 24 O -0.511 6.511 25 O -0.354 6.354 26 C 0.037 3.963 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.378 -1.007 -4.739 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.319 3.681 4 O -0.395 6.395 5 C -0.082 4.082 6 H 0.135 0.865 7 C -0.145 4.145 8 C -0.178 4.178 9 C 0.069 3.931 10 H 0.071 0.929 11 N -0.363 5.363 12 C -0.371 4.371 13 H 0.089 0.911 14 C -0.208 4.208 15 N -0.580 5.580 16 Si 0.737 3.263 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.153 4.153 21 C -0.079 4.079 22 H 0.135 0.865 23 C 0.321 3.679 24 O -0.399 6.399 25 O -0.270 6.270 26 C -0.057 4.057 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.729 -0.853 -4.823 18.393 hybrid contribution 0.302 0.053 0.268 0.408 sum -17.426 -0.800 -4.555 18.029 Atomic orbital electron populations 1.23212 0.76785 1.03368 1.02374 1.86496 1.23057 1.33523 1.84282 1.23631 0.91853 0.81227 0.71425 1.90622 1.67176 1.36373 1.45311 1.21017 0.87027 0.96443 1.03678 0.86533 1.21591 0.98169 1.00349 0.94425 1.22351 0.91476 1.00991 1.02982 1.20206 0.86187 0.92228 0.94525 0.92894 1.42382 0.99054 1.87668 1.07204 1.19230 0.89084 1.42348 0.86441 0.91052 1.24738 0.96471 1.02801 0.96786 1.69663 1.07178 1.56972 1.24199 0.86208 0.79571 0.77462 0.83051 1.21738 1.21824 1.20732 1.21895 0.89028 1.03404 1.01016 1.20961 0.98797 0.92978 0.95201 0.86531 1.23565 0.76605 0.80446 0.87285 1.90611 1.36771 1.65688 1.46821 1.86518 1.70560 1.26153 1.43762 1.23218 0.99110 0.98328 0.85050 0.92084 0.92082 0.88299 0.91360 0.90481 0.90843 0.91956 0.78173 0.93491 0.91233 0.89606 0.92051 0.92167 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.65 10.47 -39.25 -0.41 -5.06 16 3 C 0.48 6.99 6.25 36.00 0.23 7.22 16 4 O -0.51 -8.57 13.91 -25.91 -0.36 -8.93 16 5 C -0.06 -0.86 1.81 -91.77 -0.17 -1.02 16 6 H 0.12 1.57 8.10 -51.93 -0.42 1.15 16 7 C -0.11 -1.38 5.13 -26.73 -0.14 -1.52 16 8 C -0.14 -2.19 5.50 -26.73 -0.15 -2.33 16 9 C 0.18 3.24 2.77 -67.93 -0.19 3.05 16 10 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 11 N -0.72 -17.05 5.12 -53.43 -0.27 -17.33 16 12 C -0.24 -6.36 9.93 -15.06 -0.15 -6.50 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 16 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.12 -1.80 4.60 -26.71 -0.12 -1.93 16 21 C -0.06 -0.86 1.81 -91.75 -0.17 -1.03 16 22 H 0.12 1.62 8.10 -51.93 -0.42 1.20 16 23 C 0.48 7.51 6.25 36.00 0.23 7.73 16 24 O -0.51 -8.92 13.91 -25.91 -0.36 -9.28 16 25 O -0.35 -5.17 10.46 -39.26 -0.41 -5.58 16 26 C 0.04 0.41 10.56 101.05 1.07 1.48 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.38 9.72 7.80 -40.82 -0.32 9.40 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 38 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -32.43 334.30 -5.86 -38.29 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.19 Total: 6.61 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 1.41 Total: 6.14 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.45 Total: -44.02 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.54 Total: -28.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.43 -5.86 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257715280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.809 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds