Wall clock time and date at job start Tue Mar 31 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00075 * 2 1 4 4 O 1.20826 * 119.99887 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00310 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.47167 * 60.00302 * 5 3 2 7 7 C 1.53005 * 109.47343 * 300.00624 * 5 3 2 8 8 C 1.52998 * 109.47342 * 179.97438 * 7 5 3 9 9 C 1.53004 * 109.46876 * 59.99931 * 8 7 5 10 10 H 1.08998 * 109.46846 * 60.00315 * 9 8 7 11 11 N 1.46504 * 109.46960 * 179.97438 * 9 8 7 12 12 C 1.36935 * 120.00355 * 275.00344 * 11 9 8 13 13 H 1.08001 * 120.00203 * 359.97438 * 12 11 9 14 14 C 1.38812 * 120.00338 * 180.02562 * 12 11 9 15 15 N 1.31622 * 119.99483 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00386 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46927 * 89.99796 * 16 14 12 18 18 H 1.48493 * 109.47226 * 209.99901 * 16 14 12 19 19 H 1.48505 * 109.46966 * 330.00080 * 16 14 12 20 20 C 1.52992 * 109.47319 * 299.99766 * 9 8 7 21 21 C 1.52996 * 109.47607 * 180.02562 * 5 3 2 22 22 H 1.09006 * 109.46938 * 59.99761 * 21 5 3 23 23 C 1.50696 * 109.47298 * 300.00568 * 21 5 3 24 24 O 1.20833 * 119.99655 * 359.97438 * 23 21 5 25 25 O 1.34231 * 120.00640 * 180.27355 * 23 21 5 26 26 C 1.45193 * 117.00126 * 179.71955 * 25 23 21 27 27 H 1.08996 * 109.47143 * 299.99294 * 1 2 3 28 28 H 1.08998 * 109.47055 * 59.99362 * 1 2 3 29 29 H 1.09003 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46882 * 299.99673 * 7 5 3 31 31 H 1.09004 * 109.46966 * 59.99462 * 7 5 3 32 32 H 1.08996 * 109.47009 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47126 * 300.00417 * 8 7 5 34 34 H 0.97008 * 119.99476 * 95.00104 * 11 9 8 35 35 H 0.97005 * 119.99476 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47610 * 300.00082 * 20 9 8 37 37 H 1.08998 * 109.47497 * 179.97438 * 20 9 8 38 38 H 1.08997 * 109.47488 * 299.99586 * 26 25 23 39 39 H 1.08997 * 109.47515 * 60.00401 * 26 25 23 40 40 H 1.09007 * 109.46891 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9557 0.7810 -0.8909 7 6 4.1139 0.5810 1.2482 8 6 5.6418 0.6605 1.2473 9 6 6.0760 2.1277 1.2473 10 1 5.6870 2.6217 2.1376 11 7 7.5391 2.2039 1.2470 12 6 8.2285 2.1362 2.4282 13 1 7.6937 2.0271 3.3602 14 6 9.6147 2.2090 2.4280 15 7 10.2665 2.3425 1.2923 16 14 10.5551 2.1174 4.0394 17 1 10.8774 0.7003 4.3445 18 1 11.8135 2.8972 3.9232 19 1 9.7220 2.6818 5.1315 20 6 5.5285 2.8216 -0.0015 21 6 4.0001 2.7421 0.0002 22 1 3.6107 3.2356 0.8907 23 6 3.4607 3.4261 -1.2295 24 8 2.7977 2.8037 -2.0252 25 8 3.7218 4.7252 -1.4440 26 6 3.1752 5.3166 -2.6521 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.7246 1.0748 2.1385 31 1 3.8048 -0.4643 1.2481 32 1 6.0319 0.1666 2.1372 33 1 6.0308 0.1665 0.3570 34 1 8.0194 2.3023 0.4100 35 1 11.2352 2.3930 1.2921 36 1 5.9176 2.3275 -0.8918 37 1 5.8375 3.8668 -0.0013 38 1 3.5671 4.7915 -3.5232 39 1 2.0884 5.2350 -2.6372 40 1 3.4595 6.3677 -2.7028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257715280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:59 Heat of formation + Delta-G solvation = -190.700321 kcal Electronic energy + Delta-G solvation = -23624.614514 eV Core-core repulsion = 20017.814683 eV Total energy + Delta-G solvation = -3606.799831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.35852 -41.07791 -39.34858 -37.73886 -37.25594 -35.84260 -33.25443 -32.47256 -30.34798 -28.74145 -28.38412 -26.01946 -24.83865 -23.74716 -22.39056 -21.38976 -20.85366 -19.15426 -18.64015 -18.59258 -18.10344 -17.63031 -17.40592 -16.94343 -16.50622 -15.67268 -15.36701 -15.20814 -14.91796 -14.79170 -14.37750 -14.26989 -13.87483 -13.67550 -13.45555 -13.23710 -12.99647 -12.90838 -12.74442 -12.50222 -12.42746 -12.25776 -12.06602 -11.88302 -11.82217 -11.75298 -11.64608 -11.56500 -11.37337 -11.07850 -10.80230 -8.94826 -7.87823 -5.15680 1.10706 1.22323 1.53215 1.53611 1.61834 1.68929 1.70953 2.61526 3.23086 3.46310 3.57446 3.60539 3.82883 4.09606 4.13553 4.20142 4.25776 4.29297 4.30420 4.31561 4.33054 4.38706 4.48538 4.59940 4.67165 4.69397 4.84385 4.90119 5.02948 5.11599 5.25410 5.32416 5.36777 5.48406 5.59093 5.66057 6.34349 6.64810 6.73032 7.41165 8.16507 8.39185 9.35782 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.004522 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.512997 B = 6189.965721 C = 7329.115562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.478 3.522 4 O -0.533 6.533 5 C -0.061 4.061 6 H 0.120 0.880 7 C -0.093 4.093 8 C -0.127 4.127 9 C 0.174 3.826 10 H 0.054 0.946 11 N -0.736 5.736 12 C -0.233 4.233 13 H 0.080 0.920 14 C -0.075 4.075 15 N -0.970 5.970 16 Si 0.967 3.033 17 H -0.289 1.289 18 H -0.300 1.300 19 H -0.269 1.269 20 C -0.101 4.101 21 C -0.054 4.054 22 H 0.124 0.876 23 C 0.477 3.523 24 O -0.531 6.531 25 O -0.364 6.364 26 C 0.029 3.971 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.891 -1.511 -4.062 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.322 3.678 4 O -0.423 6.423 5 C -0.080 4.080 6 H 0.138 0.862 7 C -0.131 4.131 8 C -0.167 4.167 9 C 0.066 3.934 10 H 0.072 0.928 11 N -0.375 5.375 12 C -0.364 4.364 13 H 0.097 0.903 14 C -0.267 4.267 15 N -0.622 5.622 16 Si 0.797 3.203 17 H -0.216 1.216 18 H -0.227 1.227 19 H -0.194 1.194 20 C -0.139 4.139 21 C -0.074 4.074 22 H 0.142 0.858 23 C 0.321 3.679 24 O -0.421 6.421 25 O -0.280 6.280 26 C -0.064 4.064 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.302 -1.369 -4.128 19.786 hybrid contribution 0.633 0.230 0.002 0.673 sum -18.669 -1.139 -4.126 19.154 Atomic orbital electron populations 1.23525 0.74925 1.05660 1.02261 1.86481 1.24874 1.32451 1.83747 1.23668 0.91991 0.81357 0.70790 1.90612 1.67740 1.37271 1.46632 1.20998 0.86951 0.95862 1.04177 0.86224 1.21481 0.95493 1.01711 0.94448 1.22125 0.93724 0.98642 1.02231 1.20430 0.83340 0.93998 0.95666 0.92830 1.42581 1.01264 1.87763 1.05905 1.19623 0.89410 1.39780 0.87631 0.90261 1.25478 0.97609 1.04078 0.99562 1.69815 1.06814 1.59383 1.26139 0.85226 0.77955 0.77132 0.79989 1.21636 1.22744 1.19377 1.21663 0.89996 1.02559 0.99717 1.20899 0.97456 0.93769 0.95232 0.85798 1.23712 0.76218 0.80795 0.87192 1.90596 1.37775 1.66199 1.47500 1.86505 1.70626 1.25617 1.45216 1.23524 0.99102 0.99885 0.83854 0.91705 0.92745 0.84859 0.90335 0.88441 0.92024 0.92337 0.79531 0.94243 0.91332 0.90366 0.91852 0.92235 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.70 16 2 O -0.36 -8.53 10.47 -51.40 -0.54 -9.07 16 3 C 0.48 13.20 6.25 71.23 0.45 13.65 16 4 O -0.53 -17.31 13.91 28.81 0.40 -16.91 16 5 C -0.06 -1.56 1.81 -11.54 -0.02 -1.58 16 6 H 0.12 3.03 8.10 -2.38 -0.02 3.01 16 7 C -0.09 -2.18 5.13 30.60 0.16 -2.02 16 8 C -0.13 -3.86 5.50 30.60 0.17 -3.69 16 9 C 0.17 6.15 2.77 44.99 0.12 6.28 16 10 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 11 N -0.74 -34.73 5.12 -322.94 -1.65 -36.38 16 12 C -0.23 -12.24 9.93 84.03 0.83 -11.40 16 13 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 14 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 15 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 16 Si 0.97 44.93 29.55 68.60 2.03 46.96 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 C -0.10 -3.10 4.60 30.61 0.14 -2.96 16 21 C -0.05 -1.49 1.81 -11.53 -0.02 -1.51 16 22 H 0.12 3.26 8.10 -2.38 -0.02 3.24 16 23 C 0.48 14.56 6.25 71.23 0.45 15.01 16 24 O -0.53 -18.13 13.91 28.79 0.40 -17.73 16 25 O -0.36 -10.26 10.46 -51.42 -0.54 -10.80 16 26 C 0.03 0.61 10.56 113.37 1.20 1.81 16 27 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 28 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 29 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 1.96 8.11 -2.38 -0.02 1.94 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.37 19.14 7.80 -92.70 -0.72 18.42 16 35 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 38 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 39 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 40 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -69.04 334.30 5.83 -63.21 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.31 Total: 26.90 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.13 Total: 11.56 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -1.37 Total: -94.13 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.27 Total: -54.50 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.04 5.83 -63.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257715280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.491 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds