Wall clock time and date at job start Tue Mar 31 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33543 * 125.48298 * 2 1 4 4 C 1.30127 * 109.71334 * 179.97438 * 3 2 1 5 5 N 1.34899 * 108.00659 * 0.13498 * 4 3 2 6 6 N 1.31055 * 125.48732 * 179.97438 * 2 1 3 7 7 C 1.46337 * 124.07820 * 179.73572 * 5 4 3 8 8 C 1.53434 * 108.22383 * 343.79375 * 7 5 4 9 9 N 1.46987 * 109.65667 * 49.40508 * 8 7 5 10 10 C 1.38818 * 111.00459 * 165.43337 * 9 8 7 11 11 C 1.39800 * 119.58767 * 199.31684 * 10 9 8 12 12 C 1.38591 * 119.49115 * 179.97438 * 11 10 9 13 13 C 1.38392 * 118.68522 * 359.73032 * 12 11 10 14 14 C 1.40554 * 119.14218 * 0.53257 * 13 12 11 15 15 C 1.41316 * 119.78087 * 179.73052 * 14 13 12 16 16 H 1.07993 * 120.00362 * 9.26789 * 15 14 13 17 17 C 1.40035 * 119.99943 * 189.27361 * 15 14 13 18 18 N 1.30743 * 120.00092 * 189.09622 * 17 15 14 19 19 Si 1.86798 * 120.00066 * 9.36688 * 17 15 14 20 20 H 1.48504 * 109.47127 * 274.36167 * 19 17 15 21 21 H 1.48503 * 109.46925 * 34.36057 * 19 17 15 22 22 H 1.48496 * 109.47411 * 154.36080 * 19 17 15 23 23 N 1.31963 * 119.58604 * 19.29534 * 10 9 8 24 24 C 1.47355 * 111.19809 * 289.53584 * 9 8 7 25 25 H 1.09002 * 109.47287 * 90.02632 * 1 2 3 26 26 H 1.09007 * 109.46743 * 210.01980 * 1 2 3 27 27 H 1.08996 * 109.47363 * 330.02297 * 1 2 3 28 28 H 1.09003 * 109.71454 * 103.45146 * 7 5 4 29 29 H 1.08998 * 109.71208 * 224.04523 * 7 5 4 30 30 H 1.08999 * 109.43297 * 289.35198 * 8 7 5 31 31 H 1.09007 * 109.44898 * 169.46284 * 8 7 5 32 32 H 1.08001 * 120.24883 * 0.02562 * 11 10 9 33 33 H 1.08003 * 120.65887 * 180.02562 * 12 11 10 34 34 H 1.07998 * 120.43153 * 180.28375 * 13 12 11 35 35 H 0.96994 * 120.00313 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.73568 * 169.70743 * 24 9 8 37 37 H 1.09003 * 109.73841 * 290.40543 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2822 1.0874 0.0000 4 6 3.5345 0.7338 0.0005 5 7 3.5872 -0.6142 -0.0021 6 7 2.2679 -1.0671 0.0005 7 6 4.8303 -1.3862 -0.0080 8 6 5.9748 -0.4497 -0.4172 9 7 5.9176 0.7807 0.3849 10 6 7.1017 1.4978 0.2811 11 6 7.4153 2.4563 1.2492 12 6 8.5982 3.1707 1.1439 13 6 9.4410 2.9068 0.0784 14 6 9.0672 1.9348 -0.8655 15 6 9.9149 1.6586 -1.9619 16 1 10.9089 2.0795 -1.9955 17 6 9.4661 0.8392 -3.0050 18 7 10.3016 0.4382 -3.9272 19 14 7.6719 0.3251 -3.0829 20 1 7.4679 -0.8879 -2.2508 21 1 6.8186 1.4268 -2.5697 22 1 7.3029 0.0276 -4.4902 23 7 7.9173 1.2659 -0.7300 24 6 4.7618 1.6117 0.0042 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3633 -0.8899 0.5142 27 1 -0.3634 0.8901 0.5134 28 1 5.0203 -1.7848 0.9886 29 1 4.7509 -2.2054 -0.7226 30 1 5.8781 -0.1990 -1.4735 31 1 6.9295 -0.9483 -0.2490 32 1 6.7413 2.6380 2.0733 33 1 8.8595 3.9153 1.8814 34 1 10.3720 3.4436 -0.0286 35 1 9.9906 -0.1290 -4.6499 36 1 4.6350 2.4187 0.7259 37 1 4.9196 2.0282 -0.9907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320363684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:07 Heat of formation + Delta-G solvation = 136.203074 kcal Electronic energy + Delta-G solvation = -22373.178017 eV Core-core repulsion = 19152.448203 eV Total energy + Delta-G solvation = -3220.729814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.29339 -39.59072 -37.22986 -34.25429 -33.54746 -32.35391 -31.34102 -30.65700 -29.47020 -28.25064 -26.06483 -25.19272 -23.67989 -21.65959 -21.19444 -20.43817 -19.51877 -17.86116 -17.09512 -16.63799 -16.23430 -15.41638 -15.02347 -14.85539 -14.73030 -14.26095 -13.86208 -13.61726 -13.30969 -13.20833 -12.77676 -12.70161 -12.48705 -12.44001 -12.04734 -11.62135 -11.58995 -11.30551 -10.93273 -10.81336 -10.63899 -10.33992 -9.99308 -9.80131 -9.56381 -9.21871 -9.00644 -8.67023 -7.94282 -7.66629 -7.06650 -4.86236 1.64666 2.20255 2.32043 2.46371 2.88623 3.18534 3.28374 3.40293 3.56599 4.00922 4.12812 4.32725 4.41081 4.69810 4.92909 5.05391 5.17963 5.29170 5.38172 5.43780 5.46197 5.61867 5.64890 5.68117 5.78523 5.91415 6.04036 6.23644 6.36293 6.39247 6.42275 6.49082 6.73160 6.77828 6.93171 7.13626 7.34150 7.39894 7.74698 7.99506 8.17467 8.38474 8.41278 9.27240 9.85132 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.005723 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.544516 B = 4891.252271 C = 5739.321246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.211 3.789 3 N -0.537 5.537 4 C 0.287 3.713 5 N -0.370 5.370 6 N -0.318 5.318 7 C 0.131 3.869 8 C 0.040 3.960 9 N -0.482 5.482 10 C 0.332 3.668 11 C -0.290 4.290 12 C -0.038 4.038 13 C -0.261 4.261 14 C 0.260 3.740 15 C -0.407 4.407 16 H 0.098 0.902 17 C 0.079 3.921 18 N -0.795 5.795 19 Si 1.002 2.998 20 H -0.271 1.271 21 H -0.268 1.268 22 H -0.333 1.333 23 N -0.596 5.596 24 C 0.140 3.860 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.290 0.710 36 H 0.122 0.878 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 -1.385 5.548 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.070 4.070 3 N -0.266 5.266 4 C 0.010 3.990 5 N -0.160 5.160 6 N -0.147 5.147 7 C 0.009 3.991 8 C -0.088 4.088 9 N -0.203 5.203 10 C 0.100 3.900 11 C -0.315 4.315 12 C -0.063 4.063 13 C -0.283 4.283 14 C 0.136 3.864 15 C -0.438 4.438 16 H 0.116 0.884 17 C -0.144 4.144 18 N -0.418 5.418 19 Si 0.838 3.162 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.267 1.267 23 N -0.319 5.319 24 C 0.011 3.989 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.140 0.860 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.719 -2.724 5.212 13.112 hybrid contribution 0.106 0.457 -0.271 0.541 sum -11.613 -2.268 4.941 12.823 Atomic orbital electron populations 1.20036 0.83933 1.03802 1.03499 1.24414 0.98140 0.85443 0.99042 1.70026 0.99581 1.30912 1.26040 1.24069 0.94656 0.83989 0.96253 1.50228 1.05623 1.06078 1.54121 1.77804 0.86780 1.22704 1.27415 1.22197 0.77942 0.94659 1.04277 1.22953 0.98601 0.90576 0.96720 1.59758 1.01787 1.05508 1.53275 1.19131 0.89101 0.91210 0.90602 1.20613 1.01734 1.05831 1.03310 1.20879 0.93155 0.96276 0.95942 1.21611 1.02330 1.04868 0.99486 1.18290 0.87395 0.87989 0.92717 1.19562 1.00909 1.23116 1.00181 0.88423 1.26457 1.02624 0.92043 0.93310 1.69616 1.38103 1.24211 1.09833 0.84809 0.79825 0.79829 0.71734 1.19834 1.19502 1.26672 1.66674 1.09027 1.33440 1.22795 1.20801 0.81841 0.93067 1.03152 0.90073 0.90193 0.89660 0.88516 0.88204 0.92196 0.86366 0.87335 0.87387 0.87249 0.89990 0.86027 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.55 10.51 36.01 0.38 -0.17 16 2 C 0.21 3.27 8.15 -156.30 -1.27 2.00 16 3 N -0.54 -9.17 11.18 -7.99 -0.09 -9.26 16 4 C 0.29 4.93 7.83 -155.76 -1.22 3.71 16 5 N -0.37 -6.20 4.07 -58.20 -0.24 -6.43 16 6 N -0.32 -5.31 12.76 32.53 0.41 -4.89 16 7 C 0.13 1.91 7.54 -3.91 -0.03 1.88 16 8 C 0.04 0.69 3.54 -3.55 -0.01 0.68 16 9 N -0.48 -8.65 4.62 -173.70 -0.80 -9.45 16 10 C 0.33 6.78 5.91 -155.32 -0.92 5.86 16 11 C -0.29 -5.53 9.76 -38.87 -0.38 -5.91 16 12 C -0.04 -0.73 10.15 -39.39 -0.40 -1.13 16 13 C -0.26 -5.58 9.83 -38.65 -0.38 -5.96 16 14 C 0.26 6.24 6.31 -85.00 -0.54 5.70 16 15 C -0.41 -10.44 9.69 -37.74 -0.37 -10.80 16 16 H 0.10 2.56 8.06 -52.49 -0.42 2.14 16 17 C 0.08 2.00 5.52 -17.34 -0.10 1.90 16 18 N -0.79 -20.41 13.92 55.55 0.77 -19.64 16 19 Si 1.00 22.76 22.41 -169.99 -3.81 18.95 16 20 H -0.27 -5.78 5.33 56.52 0.30 -5.48 16 21 H -0.27 -6.30 6.33 56.52 0.36 -5.94 16 22 H -0.33 -7.62 7.11 56.52 0.40 -7.22 16 23 N -0.60 -13.66 3.64 -10.33 -0.04 -13.70 16 24 C 0.14 2.33 5.70 -4.63 -0.03 2.31 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.14 4.52 -51.93 -0.23 0.90 16 31 H 0.12 2.11 7.17 -51.92 -0.37 1.74 16 32 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.29 6.80 8.29 -40.82 -0.34 6.46 16 36 H 0.12 1.83 8.05 -51.93 -0.42 1.41 16 37 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -28.70 300.89 -9.04 -37.74 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.53 Total: 2.09 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -5.26 Total: 0.06 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.02 Total: -63.37 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -3.81 Total: 18.95 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.70 -9.04 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320363684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.946 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds