Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33543 * 125.48298 * 2 1 4 4 C 1.30127 * 109.71334 * 179.97438 * 3 2 1 5 5 N 1.34899 * 108.00659 * 0.13498 * 4 3 2 6 6 N 1.31055 * 125.48732 * 179.97438 * 2 1 3 7 7 C 1.46337 * 124.07820 * 179.73572 * 5 4 3 8 8 C 1.53434 * 108.22383 * 343.79375 * 7 5 4 9 9 N 1.46987 * 109.65667 * 49.40508 * 8 7 5 10 10 C 1.38818 * 111.00459 * 165.43337 * 9 8 7 11 11 C 1.39800 * 119.58767 * 199.31684 * 10 9 8 12 12 C 1.38591 * 119.49115 * 179.97438 * 11 10 9 13 13 C 1.38392 * 118.68522 * 359.73032 * 12 11 10 14 14 C 1.40554 * 119.14218 * 0.53257 * 13 12 11 15 15 C 1.41316 * 119.78087 * 179.73052 * 14 13 12 16 16 H 1.07993 * 120.00362 * 9.26789 * 15 14 13 17 17 C 1.40035 * 119.99943 * 189.27361 * 15 14 13 18 18 N 1.30743 * 120.00092 * 189.09622 * 17 15 14 19 19 Si 1.86798 * 120.00066 * 9.36688 * 17 15 14 20 20 H 1.48504 * 109.47127 * 274.36167 * 19 17 15 21 21 H 1.48503 * 109.46925 * 34.36057 * 19 17 15 22 22 H 1.48496 * 109.47411 * 154.36080 * 19 17 15 23 23 N 1.31963 * 119.58604 * 19.29534 * 10 9 8 24 24 C 1.47355 * 111.19809 * 289.53584 * 9 8 7 25 25 H 1.09002 * 109.47287 * 90.02632 * 1 2 3 26 26 H 1.09007 * 109.46743 * 210.01980 * 1 2 3 27 27 H 1.08996 * 109.47363 * 330.02297 * 1 2 3 28 28 H 1.09003 * 109.71454 * 103.45146 * 7 5 4 29 29 H 1.08998 * 109.71208 * 224.04523 * 7 5 4 30 30 H 1.08999 * 109.43297 * 289.35198 * 8 7 5 31 31 H 1.09007 * 109.44898 * 169.46284 * 8 7 5 32 32 H 1.08001 * 120.24883 * 0.02562 * 11 10 9 33 33 H 1.08003 * 120.65887 * 180.02562 * 12 11 10 34 34 H 1.07998 * 120.43153 * 180.28375 * 13 12 11 35 35 H 0.96994 * 120.00313 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.73568 * 169.70743 * 24 9 8 37 37 H 1.09003 * 109.73841 * 290.40543 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2822 1.0874 0.0000 4 6 3.5345 0.7338 0.0005 5 7 3.5872 -0.6142 -0.0021 6 7 2.2679 -1.0671 0.0005 7 6 4.8303 -1.3862 -0.0080 8 6 5.9748 -0.4497 -0.4172 9 7 5.9176 0.7807 0.3849 10 6 7.1017 1.4978 0.2811 11 6 7.4153 2.4563 1.2492 12 6 8.5982 3.1707 1.1439 13 6 9.4410 2.9068 0.0784 14 6 9.0672 1.9348 -0.8655 15 6 9.9149 1.6586 -1.9619 16 1 10.9089 2.0795 -1.9955 17 6 9.4661 0.8392 -3.0050 18 7 10.3016 0.4382 -3.9272 19 14 7.6719 0.3251 -3.0829 20 1 7.4679 -0.8879 -2.2508 21 1 6.8186 1.4268 -2.5697 22 1 7.3029 0.0276 -4.4902 23 7 7.9173 1.2659 -0.7300 24 6 4.7618 1.6117 0.0042 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3633 -0.8899 0.5142 27 1 -0.3634 0.8901 0.5134 28 1 5.0203 -1.7848 0.9886 29 1 4.7509 -2.2054 -0.7226 30 1 5.8781 -0.1990 -1.4735 31 1 6.9295 -0.9483 -0.2490 32 1 6.7413 2.6380 2.0733 33 1 8.8595 3.9153 1.8814 34 1 10.3720 3.4436 -0.0286 35 1 9.9906 -0.1290 -4.6499 36 1 4.6350 2.4187 0.7259 37 1 4.9196 2.0282 -0.9907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320363684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = 118.770155 kcal Electronic energy + Delta-G solvation = -22373.933965 eV Core-core repulsion = 19152.448203 eV Total energy + Delta-G solvation = -3221.485762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.52765 -41.16846 -38.72342 -35.78924 -35.10847 -33.59993 -33.01186 -31.97647 -30.93187 -29.40219 -27.76844 -26.55053 -25.05037 -23.24239 -22.72451 -21.71644 -20.84072 -19.67042 -18.57454 -17.96079 -17.56424 -16.85330 -16.58623 -16.47448 -16.32274 -15.56996 -15.18814 -14.90839 -14.66787 -14.61988 -14.26019 -14.17191 -13.82049 -13.51789 -13.32387 -13.13309 -12.91699 -12.69656 -12.60584 -12.52095 -12.28383 -12.09875 -11.42030 -11.23644 -11.03242 -10.58424 -10.39643 -10.32489 -9.68797 -9.30807 -8.92587 -6.73740 0.39944 0.54672 0.78271 1.12286 1.34216 1.47133 1.57270 1.68508 2.15172 2.29644 2.56798 2.78076 3.18459 3.47667 3.58084 3.72761 3.86691 3.91389 4.05646 4.18081 4.29439 4.33093 4.48422 4.56791 4.70590 4.73386 4.74311 4.79068 4.85049 4.87632 5.13244 5.17961 5.30906 5.44066 5.52056 5.54745 5.69651 5.77141 5.97504 6.17471 6.54748 6.64891 6.95217 7.53129 8.03805 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.005723 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.544516 B = 4891.252271 C = 5739.321246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.207 3.793 3 N -0.552 5.552 4 C 0.276 3.724 5 N -0.377 5.377 6 N -0.334 5.334 7 C 0.136 3.864 8 C 0.041 3.959 9 N -0.475 5.475 10 C 0.316 3.684 11 C -0.268 4.268 12 C -0.028 4.028 13 C -0.275 4.275 14 C 0.249 3.751 15 C -0.448 4.448 16 H 0.074 0.926 17 C 0.050 3.950 18 N -0.835 5.835 19 Si 1.045 2.955 20 H -0.254 1.254 21 H -0.282 1.282 22 H -0.339 1.339 23 N -0.607 5.607 24 C 0.145 3.855 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.040 0.960 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.116 0.884 35 H 0.295 0.705 36 H 0.141 0.859 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 -1.186 7.976 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 N -0.281 5.281 4 C -0.001 4.001 5 N -0.168 5.168 6 N -0.164 5.164 7 C 0.015 3.985 8 C -0.088 4.088 9 N -0.196 5.196 10 C 0.085 3.915 11 C -0.293 4.293 12 C -0.052 4.052 13 C -0.297 4.297 14 C 0.124 3.876 15 C -0.480 4.480 16 H 0.092 0.908 17 C -0.168 4.168 18 N -0.461 5.461 19 Si 0.880 3.120 20 H -0.180 1.180 21 H -0.210 1.210 22 H -0.273 1.273 23 N -0.331 5.331 24 C 0.017 3.983 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.256 -2.541 7.665 16.384 hybrid contribution 0.750 0.516 -0.782 1.200 sum -13.506 -2.025 6.883 15.293 Atomic orbital electron populations 1.20274 0.80627 1.05294 1.04931 1.25355 0.99999 0.84575 0.97481 1.70050 0.99755 1.31786 1.26517 1.24102 0.94867 0.84336 0.96777 1.50380 1.06179 1.06125 1.54132 1.77791 0.86763 1.23433 1.28399 1.22248 0.76347 0.94019 1.05895 1.22875 0.99519 0.90792 0.95615 1.59844 1.01188 1.05550 1.53044 1.19551 0.89648 0.91889 0.90410 1.21112 1.01662 1.03639 1.02850 1.21340 0.92058 0.96275 0.95488 1.21813 1.03388 1.04587 0.99936 1.18404 0.87713 0.88652 0.92813 1.19529 1.00884 1.25492 1.02125 0.90784 1.26959 1.04775 0.92021 0.93082 1.69640 1.39110 1.26271 1.11038 0.84192 0.76716 0.79704 0.71366 1.18030 1.21005 1.27308 1.66555 1.08987 1.33643 1.23931 1.20792 0.81267 0.93269 1.02995 0.88538 0.88526 0.88328 0.86620 0.86339 0.94136 0.87153 0.84125 0.83074 0.86559 0.89493 0.84148 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.91 10.51 71.24 0.75 -0.16 16 2 C 0.21 5.90 8.15 138.44 1.13 7.03 16 3 N -0.55 -17.65 11.18 -179.20 -2.00 -19.65 16 4 C 0.28 8.91 7.83 138.34 1.08 9.99 16 5 N -0.38 -11.81 4.07 -338.05 -1.37 -13.19 16 6 N -0.33 -10.41 12.76 -50.99 -0.65 -11.06 16 7 C 0.14 3.65 7.54 86.56 0.65 4.31 16 8 C 0.04 1.34 3.54 86.43 0.31 1.64 16 9 N -0.48 -15.97 4.62 -703.46 -3.25 -19.22 16 10 C 0.32 12.21 5.91 133.42 0.79 13.00 16 11 C -0.27 -9.16 9.76 22.73 0.22 -8.93 16 12 C -0.03 -0.94 10.15 22.39 0.23 -0.71 16 13 C -0.28 -11.44 9.83 22.87 0.22 -11.22 16 14 C 0.25 12.05 6.31 40.18 0.25 12.31 16 15 C -0.45 -24.05 9.69 23.46 0.23 -23.82 16 16 H 0.07 4.16 8.06 -2.91 -0.02 4.13 16 17 C 0.05 2.64 5.52 85.29 0.47 3.11 16 18 N -0.84 -44.99 13.92 21.84 0.30 -44.69 16 19 Si 1.04 48.00 22.41 68.60 1.54 49.54 16 20 H -0.25 -10.72 5.33 99.48 0.53 -10.19 16 21 H -0.28 -13.38 6.33 99.48 0.63 -12.75 16 22 H -0.34 -15.60 7.11 99.48 0.71 -14.89 16 23 N -0.61 -27.48 3.64 -186.59 -0.68 -28.16 16 24 C 0.15 4.52 5.70 85.53 0.49 5.01 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.04 1.50 4.52 -2.39 -0.01 1.49 16 31 H 0.11 3.81 7.17 -2.38 -0.02 3.79 16 32 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 34 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 35 H 0.29 14.49 8.29 -92.71 -0.77 13.73 16 36 H 0.14 3.77 8.05 -2.38 -0.02 3.75 16 37 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 Total: -1.00 -63.12 300.89 1.54 -61.58 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.84 Total: 13.29 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.82 Total: 11.56 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -7.66 Total: -135.97 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.54 Total: 49.54 kcal Total: -63.12 1.54 -61.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320363684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.348 kcal (2) G-P(sol) polarization free energy of solvation -63.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds