Wall clock time and date at job start Tue Mar 31 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86806 * 119.99856 * 2 1 4 4 H 1.48507 * 109.46791 * 270.00201 * 3 2 1 5 5 H 1.48503 * 109.47364 * 29.99904 * 3 2 1 6 6 H 1.48500 * 109.47325 * 150.00391 * 3 2 1 7 7 C 1.40017 * 120.00439 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00583 * 179.97438 * 7 2 1 9 9 C 1.41322 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78473 * 180.02562 * 9 7 2 11 11 C 1.38347 * 119.14457 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.68287 * 359.74885 * 11 10 9 13 13 C 1.39760 * 119.48911 * 0.47639 * 12 11 10 14 14 N 1.38827 * 119.58231 * 179.79181 * 13 12 11 15 15 C 1.48539 * 110.99787 * 297.12053 * 14 13 12 16 16 C 1.54932 * 103.22489 * 200.27790 * 15 14 13 17 17 C 1.54598 * 102.92273 * 37.41993 * 16 15 14 18 18 H 1.09002 * 110.31174 * 96.95391 * 17 16 15 19 19 N 1.46502 * 110.39108 * 219.07959 * 17 16 15 20 20 C 1.34427 * 126.82234 * 31.86737 * 19 17 16 21 21 N 1.30829 * 108.07558 * 179.89290 * 20 19 17 22 22 C 1.33239 * 109.83219 * 0.37355 * 21 20 19 23 23 N 1.30718 * 108.94479 * 359.77052 * 22 21 20 24 24 C 1.47897 * 110.99729 * 179.72952 * 14 13 12 25 25 N 1.31978 * 120.83408 * 359.51672 * 13 12 11 26 26 H 0.97003 * 120.00120 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.42489 * 0.02825 * 10 9 7 28 28 H 1.08000 * 120.65794 * 180.02562 * 11 10 9 29 29 H 1.08000 * 120.25837 * 180.27281 * 12 11 10 30 30 H 1.08999 * 110.66816 * 318.71552 * 15 14 13 31 31 H 1.09005 * 110.66277 * 81.67826 * 15 14 13 32 32 H 1.08994 * 110.72994 * 279.05876 * 16 15 14 33 33 H 1.09002 * 110.72359 * 155.77140 * 16 15 14 34 34 H 1.08004 * 125.96336 * 0.02562 * 20 19 17 35 35 H 1.08000 * 125.53249 * 179.72582 * 22 21 20 36 36 H 1.08997 * 109.92227 * 26.48707 * 24 14 13 37 37 H 1.08999 * 109.91658 * 265.19094 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4002 5 1 1.4388 2.6528 0.7000 6 1 3.5390 1.4403 0.6999 7 6 2.0076 -1.2125 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4364 0.0016 10 6 2.0086 -3.6513 0.0027 11 6 1.3036 -4.8417 0.0032 12 6 -0.0820 -4.7944 0.0080 13 6 -0.7281 -3.5551 0.0020 14 7 -2.1155 -3.5056 0.0024 15 6 -2.6705 -4.1246 -1.2285 16 6 -4.0980 -3.5282 -1.3125 17 6 -3.8950 -2.0754 -0.8242 18 1 -3.7864 -1.4021 -1.6745 19 7 -5.0209 -1.6567 0.0143 20 6 -5.7580 -2.4382 0.8224 21 7 -6.6627 -1.6884 1.3977 22 6 -6.5404 -0.4299 0.9776 23 7 -5.5485 -0.3602 0.1290 24 6 -2.5958 -2.1068 0.0020 25 7 -0.0360 -2.4314 0.0015 26 1 -0.4850 0.8401 0.0004 27 1 3.0886 -3.6552 0.0032 28 1 1.8223 -5.7890 0.0045 29 1 -0.6576 -5.7082 0.0130 30 1 -2.0826 -3.8398 -2.1011 31 1 -2.7093 -5.2094 -1.1296 32 1 -4.7798 -4.0650 -0.6530 33 1 -4.4621 -3.5423 -2.3398 34 1 -5.6251 -3.4995 0.9724 35 1 -7.1606 0.3983 1.2874 36 1 -1.8490 -1.4578 -0.4554 37 1 -2.7973 -1.7831 1.0232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320565638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:23 Heat of formation + Delta-G solvation = 150.958925 kcal Electronic energy + Delta-G solvation = -22207.058160 eV Core-core repulsion = 18986.968207 eV Total energy + Delta-G solvation = -3220.089953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93879 -39.45680 -37.42193 -34.11796 -33.27635 -31.33527 -30.80216 -30.32847 -28.44287 -28.08395 -25.58330 -23.19926 -22.53517 -21.67395 -21.45658 -20.13126 -19.90209 -17.73260 -17.24400 -16.26384 -15.57336 -15.04988 -14.93545 -14.71131 -14.58124 -14.08078 -13.72682 -13.54685 -13.39007 -12.66410 -12.34222 -12.02701 -11.92630 -11.74882 -11.60257 -11.40557 -11.21996 -11.12552 -10.83131 -10.77344 -10.57674 -10.11131 -9.85256 -9.62347 -9.52798 -9.41372 -8.84996 -8.17806 -7.71102 -7.17107 -6.55489 -4.63881 1.81768 2.44671 2.60768 2.88940 3.03667 3.06082 3.11794 3.13029 3.86384 4.29671 4.39917 4.45441 4.67354 4.74269 4.96377 5.00570 5.23524 5.34560 5.60543 5.70501 5.73971 5.84112 5.99517 6.00920 6.23775 6.33231 6.43413 6.52944 6.59790 6.68230 6.76027 6.97807 7.00477 7.10904 7.20830 7.49739 7.66375 7.67376 8.04570 8.21585 8.24331 8.58559 8.85260 9.92382 10.18218 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.005903 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.173592 B = 4742.128695 C = 6285.582027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.429 4.429 8 H 0.084 0.916 9 C 0.274 3.726 10 C -0.289 4.289 11 C -0.046 4.046 12 C -0.312 4.312 13 C 0.308 3.692 14 N -0.462 5.462 15 C 0.052 3.948 16 C -0.133 4.133 17 C 0.142 3.858 18 H 0.109 0.891 19 N -0.358 5.358 20 C 0.256 3.744 21 N -0.555 5.555 22 C 0.187 3.813 23 N -0.318 5.318 24 C 0.027 3.973 25 N -0.509 5.509 26 H 0.273 0.727 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.215 0.785 35 H 0.213 0.787 36 H 0.135 0.865 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.926 -3.329 -2.878 9.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.152 4.152 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.461 4.461 8 H 0.103 0.897 9 C 0.148 3.852 10 C -0.312 4.312 11 C -0.070 4.070 12 C -0.337 4.337 13 C 0.070 3.930 14 N -0.182 5.182 15 C -0.075 4.075 16 C -0.172 4.172 17 C 0.039 3.961 18 H 0.127 0.873 19 N -0.148 5.148 20 C -0.040 4.040 21 N -0.283 5.283 22 C -0.116 4.116 23 N -0.146 5.146 24 C -0.101 4.101 25 N -0.226 5.226 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.231 0.769 35 H 0.229 0.771 36 H 0.152 0.848 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.655 -2.106 -2.580 9.274 hybrid contribution 1.230 0.051 -0.476 1.320 sum -7.426 -2.055 -3.056 8.289 Atomic orbital electron populations 1.69963 1.07263 1.27852 1.29188 1.26028 0.94893 1.01091 0.93226 0.86314 0.80492 0.80718 0.79253 1.19389 1.20082 1.18528 1.19619 0.94330 0.89312 1.42789 0.89739 1.18318 0.87248 0.92038 0.87627 1.21672 0.98729 0.93423 1.17391 1.20732 0.93613 0.96663 0.96034 1.20650 0.94251 0.95782 1.23048 1.19857 0.88414 0.90657 0.94055 1.62085 1.06811 1.15299 1.34032 1.23128 0.92543 1.00199 0.91678 1.22991 0.98618 0.93285 1.02267 1.22566 0.83923 0.96579 0.93077 0.87271 1.50647 1.25272 1.05541 1.33353 1.25874 0.88666 0.99707 0.89797 1.70535 1.25916 1.03060 1.28745 1.25931 0.95782 0.95384 0.94496 1.78064 1.13959 0.99263 1.23297 1.23421 0.93971 0.91562 1.01155 1.68478 1.08074 1.24921 1.21168 0.91562 0.88322 0.88423 0.88577 0.92620 0.89175 0.89750 0.89631 0.76862 0.77072 0.84767 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.99 10.22 55.55 0.57 -17.42 16 2 C 0.07 1.76 5.50 -17.35 -0.10 1.67 16 3 Si 0.91 18.13 29.56 -169.99 -5.02 13.10 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.43 -11.01 9.14 -37.74 -0.34 -11.36 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.27 7.17 6.55 -84.99 -0.56 6.61 16 10 C -0.29 -6.87 9.83 -38.65 -0.38 -7.25 16 11 C -0.05 -0.99 10.15 -39.39 -0.40 -1.39 16 12 C -0.31 -6.74 9.48 -38.86 -0.37 -7.11 16 13 C 0.31 7.02 6.21 -155.31 -0.96 6.06 16 14 N -0.46 -8.78 5.29 -169.21 -0.90 -9.67 16 15 C 0.05 0.76 6.05 -1.90 -0.01 0.75 16 16 C -0.13 -1.56 6.62 -24.87 -0.16 -1.73 16 17 C 0.14 2.13 4.13 -66.57 -0.28 1.85 16 18 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 19 N -0.36 -5.50 3.49 -54.79 -0.19 -5.69 16 20 C 0.26 3.58 11.62 -90.66 -1.05 2.53 16 21 N -0.55 -8.39 11.19 -15.83 -0.18 -8.57 16 22 C 0.19 2.70 13.03 -91.81 -1.20 1.50 16 23 N -0.32 -5.25 12.70 29.29 0.37 -4.88 16 24 C 0.03 0.52 6.15 -2.75 -0.02 0.50 16 25 N -0.51 -13.03 5.79 -10.32 -0.06 -13.09 16 26 H 0.27 6.33 8.29 -40.82 -0.34 5.99 16 27 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 28 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.10 1.85 8.05 -52.49 -0.42 1.43 16 30 H 0.06 0.88 8.00 -51.93 -0.42 0.46 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.86 6.05 -51.93 -0.31 0.55 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.22 2.26 6.96 -52.48 -0.37 1.90 16 35 H 0.21 2.20 8.06 -52.49 -0.42 1.77 16 36 H 0.13 3.03 5.19 -51.93 -0.27 2.76 16 37 H 0.08 1.63 7.92 -51.93 -0.41 1.22 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -29.60 310.93 -10.83 -40.43 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.28 Total: 8.48 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -5.83 Total: -7.37 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.38 Total: -59.33 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.60 -10.83 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320565638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.389 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds