Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86806 * 119.99856 * 2 1 4 4 H 1.48507 * 109.46791 * 270.00201 * 3 2 1 5 5 H 1.48503 * 109.47364 * 29.99904 * 3 2 1 6 6 H 1.48500 * 109.47325 * 150.00391 * 3 2 1 7 7 C 1.40017 * 120.00439 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00583 * 179.97438 * 7 2 1 9 9 C 1.41322 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78473 * 180.02562 * 9 7 2 11 11 C 1.38347 * 119.14457 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.68287 * 359.74885 * 11 10 9 13 13 C 1.39760 * 119.48911 * 0.47639 * 12 11 10 14 14 N 1.38827 * 119.58231 * 179.79181 * 13 12 11 15 15 C 1.48539 * 110.99787 * 297.12053 * 14 13 12 16 16 C 1.54932 * 103.22489 * 200.27790 * 15 14 13 17 17 C 1.54598 * 102.92273 * 37.41993 * 16 15 14 18 18 H 1.09002 * 110.31174 * 96.95391 * 17 16 15 19 19 N 1.46502 * 110.39108 * 219.07959 * 17 16 15 20 20 C 1.34427 * 126.82234 * 31.86737 * 19 17 16 21 21 N 1.30829 * 108.07558 * 179.89290 * 20 19 17 22 22 C 1.33239 * 109.83219 * 0.37355 * 21 20 19 23 23 N 1.30718 * 108.94479 * 359.77052 * 22 21 20 24 24 C 1.47897 * 110.99729 * 179.72952 * 14 13 12 25 25 N 1.31978 * 120.83408 * 359.51672 * 13 12 11 26 26 H 0.97003 * 120.00120 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.42489 * 0.02825 * 10 9 7 28 28 H 1.08000 * 120.65794 * 180.02562 * 11 10 9 29 29 H 1.08000 * 120.25837 * 180.27281 * 12 11 10 30 30 H 1.08999 * 110.66816 * 318.71552 * 15 14 13 31 31 H 1.09005 * 110.66277 * 81.67826 * 15 14 13 32 32 H 1.08994 * 110.72994 * 279.05876 * 16 15 14 33 33 H 1.09002 * 110.72359 * 155.77140 * 16 15 14 34 34 H 1.08004 * 125.96336 * 0.02562 * 20 19 17 35 35 H 1.08000 * 125.53249 * 179.72582 * 22 21 20 36 36 H 1.08997 * 109.92227 * 26.48707 * 24 14 13 37 37 H 1.08999 * 109.91658 * 265.19094 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4002 5 1 1.4388 2.6528 0.7000 6 1 3.5390 1.4403 0.6999 7 6 2.0076 -1.2125 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3010 -2.4364 0.0016 10 6 2.0086 -3.6513 0.0027 11 6 1.3036 -4.8417 0.0032 12 6 -0.0820 -4.7944 0.0080 13 6 -0.7281 -3.5551 0.0020 14 7 -2.1155 -3.5056 0.0024 15 6 -2.6705 -4.1246 -1.2285 16 6 -4.0980 -3.5282 -1.3125 17 6 -3.8950 -2.0754 -0.8242 18 1 -3.7864 -1.4021 -1.6745 19 7 -5.0209 -1.6567 0.0143 20 6 -5.7580 -2.4382 0.8224 21 7 -6.6627 -1.6884 1.3977 22 6 -6.5404 -0.4299 0.9776 23 7 -5.5485 -0.3602 0.1290 24 6 -2.5958 -2.1068 0.0020 25 7 -0.0360 -2.4314 0.0015 26 1 -0.4850 0.8401 0.0004 27 1 3.0886 -3.6552 0.0032 28 1 1.8223 -5.7890 0.0045 29 1 -0.6576 -5.7082 0.0130 30 1 -2.0826 -3.8398 -2.1011 31 1 -2.7093 -5.2094 -1.1296 32 1 -4.7798 -4.0650 -0.6530 33 1 -4.4621 -3.5423 -2.3398 34 1 -5.6251 -3.4995 0.9724 35 1 -7.1606 0.3983 1.2874 36 1 -1.8490 -1.4578 -0.4554 37 1 -2.7973 -1.7831 1.0232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320565638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = 135.071424 kcal Electronic energy + Delta-G solvation = -22207.747094 eV Core-core repulsion = 18986.968207 eV Total energy + Delta-G solvation = -3220.778886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.07727 -40.99241 -38.98198 -35.73786 -34.79462 -32.67138 -32.28350 -31.83649 -29.91133 -29.52797 -27.32658 -24.58244 -23.79913 -23.15832 -22.86541 -21.58135 -21.23102 -19.48228 -18.41911 -17.88074 -16.90393 -16.54180 -16.31978 -16.21696 -16.09670 -15.34687 -15.13937 -14.95746 -14.86080 -14.24840 -13.82177 -13.45043 -13.29026 -13.08358 -12.96507 -12.82010 -12.77601 -12.68982 -12.56149 -12.30821 -11.88836 -11.80878 -11.27782 -11.01182 -10.79866 -10.61358 -10.50660 -9.96728 -9.50186 -8.87827 -8.34851 -6.53352 0.69394 0.84855 1.15731 1.31976 1.37469 1.48746 1.51189 2.01224 2.18472 2.75386 2.97847 3.27246 3.47154 3.49207 3.84908 3.89085 3.94353 4.09050 4.22767 4.33138 4.47204 4.55976 4.69596 4.78911 4.84383 4.87531 4.92202 4.93729 5.07397 5.20600 5.29225 5.44898 5.51094 5.59682 5.79505 5.89414 5.90350 5.96121 6.23530 6.43506 6.75381 7.01401 7.12019 8.12185 8.38569 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014968 B = 0.005903 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.173592 B = 4742.128695 C = 6285.582027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.031 3.969 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.086 0.914 9 C 0.240 3.760 10 C -0.315 4.315 11 C -0.043 4.043 12 C -0.310 4.310 13 C 0.292 3.708 14 N -0.462 5.462 15 C 0.050 3.950 16 C -0.113 4.113 17 C 0.151 3.849 18 H 0.104 0.896 19 N -0.367 5.367 20 C 0.261 3.739 21 N -0.573 5.573 22 C 0.191 3.809 23 N -0.358 5.358 24 C 0.037 3.963 25 N -0.535 5.535 26 H 0.274 0.726 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.041 0.959 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.248 0.752 35 H 0.244 0.756 36 H 0.098 0.902 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 -4.785 -3.286 10.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.191 4.191 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.104 0.896 9 C 0.114 3.886 10 C -0.337 4.337 11 C -0.067 4.067 12 C -0.334 4.334 13 C 0.054 3.946 14 N -0.182 5.182 15 C -0.076 4.076 16 C -0.152 4.152 17 C 0.047 3.953 18 H 0.122 0.878 19 N -0.157 5.157 20 C -0.035 4.035 21 N -0.301 5.301 22 C -0.112 4.112 23 N -0.186 5.186 24 C -0.092 4.092 25 N -0.254 5.254 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.153 0.847 29 H 0.144 0.856 30 H 0.060 0.940 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.264 0.736 35 H 0.260 0.740 36 H 0.116 0.884 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.968 -3.590 -2.997 11.010 hybrid contribution 1.557 0.374 -0.299 1.629 sum -8.410 -3.215 -3.295 9.588 Atomic orbital electron populations 1.70099 1.08525 1.28555 1.29864 1.26845 0.95697 1.04103 0.92480 0.85226 0.79063 0.76157 0.79411 1.18666 1.19825 1.18046 1.19921 0.94677 0.90385 1.44790 0.89553 1.18786 0.88110 0.93297 0.88403 1.21845 0.99326 0.93740 1.18811 1.21148 0.93889 0.97414 0.94280 1.21035 0.94630 0.96375 1.21394 1.20390 0.90079 0.90693 0.93399 1.62089 1.04762 1.15127 1.36187 1.23304 0.93614 1.01530 0.89143 1.23005 0.97207 0.90337 1.04608 1.22376 0.82159 0.98866 0.91861 0.87827 1.50600 1.25505 1.05535 1.34081 1.26570 0.87585 1.00869 0.88438 1.70588 1.26682 1.03493 1.29306 1.26613 0.95188 0.96129 0.93265 1.78030 1.15248 1.00377 1.24916 1.23081 0.95465 0.91181 0.99476 1.68499 1.08133 1.26651 1.22077 0.91506 0.87605 0.84707 0.85569 0.94003 0.86498 0.87213 0.86509 0.73622 0.73993 0.88406 0.93851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.20 10.22 21.83 0.22 -38.98 16 2 C 0.03 1.54 5.50 85.29 0.47 2.01 16 3 Si 0.98 38.28 29.56 68.60 2.03 40.31 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.47 -24.97 9.14 23.46 0.21 -24.76 16 8 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.24 13.06 6.55 40.19 0.26 13.33 16 10 C -0.31 -15.15 9.83 22.87 0.22 -14.93 16 11 C -0.04 -1.80 10.15 22.39 0.23 -1.57 16 12 C -0.31 -12.86 9.48 22.73 0.22 -12.65 16 13 C 0.29 13.35 6.21 133.40 0.83 14.18 16 14 N -0.46 -17.22 5.29 -689.25 -3.65 -20.86 16 15 C 0.05 1.35 6.05 86.65 0.52 1.87 16 16 C -0.11 -2.29 6.62 31.80 0.21 -2.08 16 17 C 0.15 4.41 4.13 45.87 0.19 4.60 16 18 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 19 N -0.37 -10.89 3.49 -327.24 -1.14 -12.04 16 20 C 0.26 6.73 11.62 180.36 2.10 8.83 16 21 N -0.57 -16.27 11.19 -204.00 -2.28 -18.55 16 22 C 0.19 5.26 13.03 180.76 2.36 7.61 16 23 N -0.36 -11.66 12.70 -61.24 -0.78 -12.44 16 24 C 0.04 1.45 6.15 86.45 0.53 1.98 16 25 N -0.54 -28.42 5.79 -186.58 -1.08 -29.50 16 26 H 0.27 13.37 8.29 -92.71 -0.77 12.60 16 27 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 28 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 29 H 0.13 4.41 8.05 -2.91 -0.02 4.38 16 30 H 0.04 1.25 8.00 -2.39 -0.02 1.23 16 31 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.11 1.71 6.05 -2.39 -0.01 1.70 16 33 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.25 4.31 6.96 -2.91 -0.02 4.29 16 35 H 0.24 4.61 8.06 -2.91 -0.02 4.59 16 36 H 0.10 4.67 5.19 -2.39 -0.01 4.66 16 37 H 0.04 1.94 7.92 -2.39 -0.02 1.92 16 Total: -1.00 -67.95 310.93 2.76 -65.18 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 1.09 Total: 28.44 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 8.35 Total: -1.57 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -8.71 Total: -132.37 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -67.95 2.76 -65.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320565638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.256 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds