Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86800 * 120.00302 * 2 1 4 4 H 1.48501 * 109.46852 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47336 * 119.99509 * 3 2 1 6 6 H 1.48499 * 109.47118 * 239.99884 * 3 2 1 7 7 C 1.40026 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00410 * 157.68651 * 7 2 1 9 9 C 1.41319 * 119.99642 * 337.68043 * 7 2 1 10 10 C 1.40593 * 119.78409 * 170.93727 * 9 7 2 11 11 C 1.38342 * 119.15009 * 179.71036 * 10 9 7 12 12 C 1.38641 * 118.67745 * 0.55959 * 11 10 9 13 13 C 1.39753 * 119.49215 * 359.72080 * 12 11 10 14 14 N 1.38830 * 119.58500 * 179.97438 * 13 12 11 15 15 C 1.48537 * 110.99450 * 98.97844 * 14 13 12 16 16 C 1.54944 * 103.22094 * 159.72290 * 15 14 13 17 17 C 1.54590 * 102.92227 * 322.58549 * 16 15 14 18 18 H 1.08999 * 110.39267 * 262.99554 * 17 16 15 19 19 N 1.46501 * 110.30996 * 140.87542 * 17 16 15 20 20 C 1.34429 * 126.82142 * 328.99452 * 19 17 16 21 21 N 1.30834 * 108.07628 * 179.89232 * 20 19 17 22 22 C 1.33239 * 109.83037 * 0.37996 * 21 20 19 23 23 N 1.30714 * 108.94581 * 359.76243 * 22 21 20 24 24 C 1.47900 * 111.00228 * 216.37374 * 14 13 12 25 25 N 1.31983 * 120.83290 * 359.97438 * 13 12 11 26 26 H 0.97001 * 119.99804 * 175.17367 * 1 2 3 27 27 H 1.08006 * 120.42535 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.66520 * 180.28409 * 11 10 9 29 29 H 1.07998 * 120.25081 * 179.71114 * 12 11 10 30 30 H 1.09002 * 110.66944 * 278.15434 * 15 14 13 31 31 H 1.08997 * 110.66883 * 41.28788 * 15 14 13 32 32 H 1.09004 * 110.72253 * 204.22757 * 16 15 14 33 33 H 1.09002 * 110.72485 * 80.94578 * 16 15 14 34 34 H 1.07996 * 125.96197 * 0.03824 * 20 19 17 35 35 H 1.07999 * 125.52930 * 179.79887 * 22 21 20 36 36 H 1.08997 * 109.91636 * 333.51260 * 24 14 13 37 37 H 1.09006 * 109.91610 * 94.60769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0953 1.6963 -1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0269 -1.2478 -0.3545 9 6 1.3804 -2.3904 0.4659 10 6 2.0117 -3.6342 0.2895 11 6 1.3887 -4.7782 0.7555 12 6 0.1528 -4.6585 1.3723 13 6 -0.4265 -3.3945 1.5126 14 7 -1.6643 -3.2724 2.1295 15 6 -1.5132 -2.8622 3.5491 16 6 -2.9052 -2.2787 3.8994 17 6 -3.3136 -1.5531 2.5968 18 1 -3.0807 -0.4905 2.6650 19 7 -4.7424 -1.7438 2.3351 20 6 -5.4868 -2.8125 2.6679 21 7 -6.7118 -2.5962 2.2623 22 6 -6.7860 -1.4092 1.6616 23 7 -5.6052 -0.8490 1.6812 24 6 -2.4742 -2.2142 1.4880 25 7 0.1882 -2.3152 1.0661 26 1 -0.4850 -0.8371 -0.0707 27 1 2.9727 -3.6954 -0.1996 28 1 1.8537 -5.7457 0.6372 29 1 -0.3583 -5.5354 1.7414 30 1 -1.2885 -3.7244 4.1769 31 1 -0.7404 -2.1002 3.6492 32 1 -2.8305 -1.5731 4.7268 33 1 -3.6100 -3.0765 4.1338 34 1 -5.1356 -3.6946 3.1826 35 1 -7.6774 -0.9793 1.2292 36 1 -1.8202 -1.4745 1.0264 37 1 -3.1285 -2.6528 0.7345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320565639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = 140.534641 kcal Electronic energy + Delta-G solvation = -22231.735081 eV Core-core repulsion = 19011.193097 eV Total energy + Delta-G solvation = -3220.541984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.00731 -39.62317 -37.62914 -34.29490 -33.43324 -31.40294 -30.82249 -30.26385 -28.60055 -28.09866 -25.50441 -23.26472 -22.58988 -21.74281 -21.51533 -20.35770 -20.10758 -18.44158 -17.33117 -16.26527 -15.67392 -15.16391 -15.00512 -14.75654 -14.41059 -14.20903 -13.89459 -13.57564 -13.44503 -12.85191 -12.36149 -12.09310 -11.97551 -11.89101 -11.73533 -11.60722 -11.47905 -11.12605 -10.83170 -10.80547 -10.45245 -9.97897 -9.90132 -9.68738 -9.52641 -9.22385 -8.86571 -8.44672 -8.10202 -7.66322 -7.02002 -4.72446 1.74996 2.36991 2.45889 2.70797 3.05994 3.10880 3.18862 3.30809 3.95877 4.19215 4.33285 4.39456 4.53721 4.64789 4.90789 4.95707 5.19303 5.28840 5.47167 5.57301 5.66496 5.73929 5.87237 5.95118 6.05340 6.12770 6.35958 6.41769 6.53555 6.55054 6.60876 6.73184 6.92247 6.99465 7.30646 7.45916 7.52208 7.67493 7.89494 8.03265 8.18246 8.55170 8.70510 9.59409 10.07600 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.005529 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.514506 B = 5063.225147 C = 6231.738712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.037 3.963 3 Si 1.066 2.934 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.484 4.484 8 H 0.082 0.918 9 C 0.257 3.743 10 C -0.277 4.277 11 C -0.046 4.046 12 C -0.293 4.293 13 C 0.313 3.687 14 N -0.463 5.463 15 C 0.049 3.951 16 C -0.130 4.130 17 C 0.149 3.851 18 H 0.114 0.886 19 N -0.361 5.361 20 C 0.257 3.743 21 N -0.554 5.554 22 C 0.188 3.812 23 N -0.317 5.317 24 C 0.023 3.977 25 N -0.582 5.582 26 H 0.314 0.686 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.216 0.784 35 H 0.214 0.786 36 H 0.108 0.892 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 -2.010 6.169 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.191 4.191 3 Si 0.889 3.111 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.515 4.515 8 H 0.100 0.900 9 C 0.133 3.867 10 C -0.299 4.299 11 C -0.070 4.070 12 C -0.318 4.318 13 C 0.078 3.922 14 N -0.186 5.186 15 C -0.079 4.079 16 C -0.169 4.169 17 C 0.046 3.954 18 H 0.132 0.868 19 N -0.151 5.151 20 C -0.040 4.040 21 N -0.281 5.281 22 C -0.115 4.115 23 N -0.145 5.145 24 C -0.106 4.106 25 N -0.302 5.302 26 H 0.133 0.867 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.232 0.768 35 H 0.230 0.770 36 H 0.126 0.874 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.444 0.426 5.979 8.801 hybrid contribution 1.176 -2.071 -0.108 2.384 sum -5.268 -1.645 5.871 8.058 Atomic orbital electron populations 1.70265 1.08364 1.36204 1.23457 1.26972 0.95908 1.03897 0.92292 0.83632 0.75621 0.73921 0.77906 1.19738 1.20083 1.20141 1.20605 1.01202 0.93099 1.36553 0.90011 1.18305 0.87311 0.92332 0.88780 1.21654 1.02878 0.93458 1.11934 1.20848 0.94150 0.97005 0.94997 1.20658 0.99331 0.95932 1.15833 1.19649 0.88723 0.90272 0.93537 1.62817 1.12117 1.41577 1.02057 1.23164 0.95455 0.99923 0.89324 1.22973 0.98081 1.00138 0.95686 1.22391 0.74094 1.02766 0.96141 0.86791 1.50660 1.09652 1.13238 1.41565 1.25904 0.86856 0.93766 0.97483 1.70551 1.19412 1.18439 1.19745 1.25963 0.96448 0.90615 0.98461 1.78101 1.01657 1.16393 1.18328 1.23384 0.96400 0.95105 0.95731 1.67943 1.12433 1.29924 1.19894 0.86650 0.88063 0.88058 0.87909 0.89275 0.92112 0.89473 0.89718 0.76779 0.76968 0.87401 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.82 13.10 55.55 0.73 -19.10 16 2 C 0.04 0.93 5.32 -17.35 -0.09 0.84 16 3 Si 1.07 20.96 29.99 -169.99 -5.10 15.86 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.48 -12.48 9.06 -37.74 -0.34 -12.82 16 8 H 0.08 2.00 7.94 -52.49 -0.42 1.58 16 9 C 0.26 6.66 6.35 -85.00 -0.54 6.12 16 10 C -0.28 -6.54 9.83 -38.66 -0.38 -6.92 16 11 C -0.05 -0.98 10.15 -39.39 -0.40 -1.38 16 12 C -0.29 -6.30 10.04 -38.87 -0.39 -6.69 16 13 C 0.31 6.98 5.55 -155.31 -0.86 6.12 16 14 N -0.46 -8.58 5.25 -169.21 -0.89 -9.47 16 15 C 0.05 0.74 6.50 -1.89 -0.01 0.73 16 16 C -0.13 -1.58 6.61 -24.87 -0.16 -1.74 16 17 C 0.15 2.27 4.14 -66.58 -0.28 1.99 16 18 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 19 N -0.36 -5.46 3.50 -54.80 -0.19 -5.65 16 20 C 0.26 3.47 11.63 -90.65 -1.05 2.41 16 21 N -0.55 -8.11 11.19 -15.83 -0.18 -8.29 16 22 C 0.19 2.65 13.03 -91.81 -1.20 1.45 16 23 N -0.32 -5.18 12.70 29.29 0.37 -4.81 16 24 C 0.02 0.42 6.38 -2.76 -0.02 0.40 16 25 N -0.58 -14.51 5.90 -10.33 -0.06 -14.57 16 26 H 0.31 8.45 4.47 -40.82 -0.18 8.27 16 27 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.07 8.00 -51.93 -0.42 0.65 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.86 6.01 -51.93 -0.31 0.55 16 34 H 0.22 2.15 6.91 -52.49 -0.36 1.79 16 35 H 0.21 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.11 2.40 4.89 -51.93 -0.25 2.14 16 37 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -29.63 310.34 -10.48 -40.11 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -4.11 Total: 10.73 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -5.73 Total: -9.48 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.22 Total: -61.89 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.10 Total: 15.86 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.63 -10.48 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320565639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.642 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds