Wall clock time and date at job start Tue Mar 31 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86800 * 120.00302 * 2 1 4 4 H 1.48501 * 109.46852 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47336 * 119.99509 * 3 2 1 6 6 H 1.48499 * 109.47118 * 239.99884 * 3 2 1 7 7 C 1.40026 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00410 * 157.68651 * 7 2 1 9 9 C 1.41319 * 119.99642 * 337.68043 * 7 2 1 10 10 C 1.40593 * 119.78409 * 170.93727 * 9 7 2 11 11 C 1.38342 * 119.15009 * 179.71036 * 10 9 7 12 12 C 1.38641 * 118.67745 * 0.55959 * 11 10 9 13 13 C 1.39753 * 119.49215 * 359.72080 * 12 11 10 14 14 N 1.38830 * 119.58500 * 179.97438 * 13 12 11 15 15 C 1.48537 * 110.99450 * 98.97844 * 14 13 12 16 16 C 1.54944 * 103.22094 * 159.72290 * 15 14 13 17 17 C 1.54590 * 102.92227 * 322.58549 * 16 15 14 18 18 H 1.08999 * 110.39267 * 262.99554 * 17 16 15 19 19 N 1.46501 * 110.30996 * 140.87542 * 17 16 15 20 20 C 1.34429 * 126.82142 * 328.99452 * 19 17 16 21 21 N 1.30834 * 108.07628 * 179.89232 * 20 19 17 22 22 C 1.33239 * 109.83037 * 0.37996 * 21 20 19 23 23 N 1.30714 * 108.94581 * 359.76243 * 22 21 20 24 24 C 1.47900 * 111.00228 * 216.37374 * 14 13 12 25 25 N 1.31983 * 120.83290 * 359.97438 * 13 12 11 26 26 H 0.97001 * 119.99804 * 175.17367 * 1 2 3 27 27 H 1.08006 * 120.42535 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.66520 * 180.28409 * 11 10 9 29 29 H 1.07998 * 120.25081 * 179.71114 * 12 11 10 30 30 H 1.09002 * 110.66944 * 278.15434 * 15 14 13 31 31 H 1.08997 * 110.66883 * 41.28788 * 15 14 13 32 32 H 1.09004 * 110.72253 * 204.22757 * 16 15 14 33 33 H 1.09002 * 110.72485 * 80.94578 * 16 15 14 34 34 H 1.07996 * 125.96197 * 0.03824 * 20 19 17 35 35 H 1.07999 * 125.52930 * 179.79887 * 22 21 20 36 36 H 1.08997 * 109.91636 * 333.51260 * 24 14 13 37 37 H 1.09006 * 109.91610 * 94.60769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 -0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0953 1.6963 -1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0269 -1.2478 -0.3545 9 6 1.3804 -2.3904 0.4659 10 6 2.0117 -3.6342 0.2895 11 6 1.3887 -4.7782 0.7555 12 6 0.1528 -4.6585 1.3723 13 6 -0.4265 -3.3945 1.5126 14 7 -1.6643 -3.2724 2.1295 15 6 -1.5132 -2.8622 3.5491 16 6 -2.9052 -2.2787 3.8994 17 6 -3.3136 -1.5531 2.5968 18 1 -3.0807 -0.4905 2.6650 19 7 -4.7424 -1.7438 2.3351 20 6 -5.4868 -2.8125 2.6679 21 7 -6.7118 -2.5962 2.2623 22 6 -6.7860 -1.4092 1.6616 23 7 -5.6052 -0.8490 1.6812 24 6 -2.4742 -2.2142 1.4880 25 7 0.1882 -2.3152 1.0661 26 1 -0.4850 -0.8371 -0.0707 27 1 2.9727 -3.6954 -0.1996 28 1 1.8537 -5.7457 0.6372 29 1 -0.3583 -5.5354 1.7414 30 1 -1.2885 -3.7244 4.1769 31 1 -0.7404 -2.1002 3.6492 32 1 -2.8305 -1.5731 4.7268 33 1 -3.6100 -3.0765 4.1338 34 1 -5.1356 -3.6946 3.1826 35 1 -7.6774 -0.9793 1.2292 36 1 -1.8202 -1.4745 1.0264 37 1 -3.1285 -2.6528 0.7345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320565639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:24 Heat of formation + Delta-G solvation = 124.677608 kcal Electronic energy + Delta-G solvation = -22232.422693 eV Core-core repulsion = 19011.193097 eV Total energy + Delta-G solvation = -3221.229596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.12430 -41.19168 -39.18841 -35.96461 -34.91777 -32.71755 -32.25122 -31.84314 -30.06777 -29.53716 -27.28461 -24.62846 -23.84395 -23.33197 -22.92981 -21.76732 -21.40628 -20.22591 -18.50300 -17.80217 -17.11981 -16.65155 -16.39102 -16.18912 -15.82779 -15.74354 -15.12464 -15.01726 -14.88982 -14.41290 -13.96489 -13.57299 -13.46314 -13.32749 -13.22185 -12.95187 -12.79319 -12.67781 -12.50134 -12.02215 -11.95579 -11.69909 -11.04113 -11.01871 -10.84056 -10.71596 -10.54353 -10.23648 -9.87227 -9.43360 -8.88675 -6.65257 0.63292 0.70109 0.92818 1.24889 1.49757 1.61722 1.77866 1.98666 2.32373 2.67674 2.76975 3.19462 3.35012 3.45127 3.60775 3.78755 3.88438 4.02705 4.11369 4.14763 4.39848 4.41469 4.52667 4.68659 4.73253 4.75721 4.79219 4.83723 4.94610 5.01390 5.27329 5.47655 5.49500 5.57714 5.65897 5.73465 5.78559 5.85645 6.04963 6.24662 6.71159 6.84638 7.08904 7.77075 8.13415 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.016356 B = 0.005529 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.514506 B = 5063.225147 C = 6231.738712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.003 3.997 3 Si 1.117 2.883 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.523 4.523 8 H 0.083 0.917 9 C 0.228 3.772 10 C -0.301 4.301 11 C -0.040 4.040 12 C -0.290 4.290 13 C 0.298 3.702 14 N -0.455 5.455 15 C 0.047 3.953 16 C -0.110 4.110 17 C 0.159 3.841 18 H 0.098 0.902 19 N -0.371 5.371 20 C 0.264 3.736 21 N -0.570 5.570 22 C 0.193 3.807 23 N -0.361 5.361 24 C 0.028 3.972 25 N -0.599 5.599 26 H 0.301 0.699 27 H 0.109 0.891 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.032 0.968 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.251 0.749 35 H 0.245 0.755 36 H 0.068 0.932 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 -3.302 7.806 10.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.220 4.220 3 Si 0.935 3.065 4 H -0.200 1.200 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.554 4.554 8 H 0.101 0.899 9 C 0.103 3.897 10 C -0.323 4.323 11 C -0.064 4.064 12 C -0.314 4.314 13 C 0.064 3.936 14 N -0.177 5.177 15 C -0.079 4.079 16 C -0.148 4.148 17 C 0.055 3.945 18 H 0.116 0.884 19 N -0.161 5.161 20 C -0.032 4.032 21 N -0.298 5.298 22 C -0.109 4.109 23 N -0.188 5.188 24 C -0.101 4.101 25 N -0.319 5.319 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.158 0.842 29 H 0.148 0.852 30 H 0.133 0.867 31 H 0.050 0.950 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.267 0.733 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.143 -0.898 7.622 10.485 hybrid contribution 1.301 -1.878 -0.605 2.363 sum -5.842 -2.776 7.018 9.544 Atomic orbital electron populations 1.70360 1.09169 1.35371 1.26219 1.28379 0.95926 1.07018 0.90635 0.83004 0.74672 0.69802 0.79053 1.19954 1.18936 1.18043 1.20859 1.01661 0.94192 1.38662 0.89862 1.18755 0.88124 0.93498 0.89284 1.21844 1.03668 0.93645 1.13185 1.21272 0.93881 0.97933 0.93349 1.21088 0.99321 0.96429 1.14540 1.20186 0.89838 0.90307 0.93278 1.62896 1.10095 1.41328 1.03427 1.23284 0.96727 1.00331 0.87593 1.22978 0.96327 1.01072 0.94457 1.22156 0.74069 1.01907 0.96329 0.88357 1.50576 1.09361 1.13831 1.42283 1.26644 0.86347 0.93871 0.96296 1.70614 1.20021 1.18701 1.20466 1.26646 0.96783 0.90250 0.97225 1.78076 1.02763 1.18029 1.19967 1.23172 0.95987 0.94201 0.96731 1.67986 1.12369 1.31444 1.20128 0.88147 0.87324 0.84186 0.85199 0.86674 0.94981 0.86975 0.86562 0.73306 0.73884 0.91337 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.22 13.10 21.84 0.29 -42.93 16 2 C 0.00 0.14 5.32 85.29 0.45 0.59 16 3 Si 1.12 43.11 29.99 68.60 2.06 45.16 16 4 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 6 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 7 C -0.52 -28.05 9.06 23.46 0.21 -27.84 16 8 H 0.08 4.24 7.94 -2.91 -0.02 4.22 16 9 C 0.23 12.24 6.35 40.19 0.26 12.49 16 10 C -0.30 -14.34 9.83 22.87 0.22 -14.11 16 11 C -0.04 -1.65 10.15 22.39 0.23 -1.42 16 12 C -0.29 -11.94 10.04 22.73 0.23 -11.71 16 13 C 0.30 13.30 5.55 133.40 0.74 14.04 16 14 N -0.45 -16.51 5.25 -689.25 -3.62 -20.12 16 15 C 0.05 1.36 6.50 86.65 0.56 1.92 16 16 C -0.11 -2.36 6.61 31.80 0.21 -2.15 16 17 C 0.16 4.76 4.14 45.87 0.19 4.95 16 18 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 19 N -0.37 -10.77 3.50 -327.28 -1.15 -11.91 16 20 C 0.26 6.44 11.63 180.36 2.10 8.54 16 21 N -0.57 -15.44 11.19 -204.00 -2.28 -17.72 16 22 C 0.19 5.16 13.03 180.77 2.36 7.52 16 23 N -0.36 -11.62 12.70 -61.25 -0.78 -12.40 16 24 C 0.03 1.08 6.38 86.44 0.55 1.63 16 25 N -0.60 -30.87 5.90 -186.59 -1.10 -31.97 16 26 H 0.30 17.22 4.47 -92.71 -0.41 16.81 16 27 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 28 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 30 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.03 1.12 8.00 -2.39 -0.02 1.10 16 32 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.12 1.80 6.01 -2.39 -0.01 1.79 16 34 H 0.25 3.91 6.91 -2.91 -0.02 3.89 16 35 H 0.25 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.07 3.23 4.89 -2.39 -0.01 3.22 16 37 H 0.06 2.44 7.93 -2.38 -0.02 2.42 16 Total: -1.00 -67.99 310.34 3.18 -64.82 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 1.45 Total: 32.64 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 8.31 Total: -5.55 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -8.64 Total: -137.07 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.06 Total: 45.16 kcal Total: -67.99 3.18 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320565639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.495 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds