Wall clock time and date at job start Tue Mar 31 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86796 * 120.00583 * 2 1 4 4 H 1.48492 * 109.47232 * 274.98897 * 3 2 1 5 5 H 1.48506 * 109.46804 * 34.98770 * 3 2 1 6 6 H 1.48494 * 109.47148 * 154.98272 * 3 2 1 7 7 C 1.40027 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00416 * 186.35245 * 7 2 1 9 9 C 1.41321 * 119.99920 * 6.34222 * 7 2 1 10 10 C 1.40596 * 119.78134 * 173.77811 * 9 7 2 11 11 C 1.38355 * 119.14330 * 180.02562 * 10 9 7 12 12 C 1.38634 * 118.68302 * 0.02562 * 11 10 9 13 13 C 1.39757 * 119.49009 * 0.02562 * 12 11 10 14 14 N 1.38831 * 119.58637 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99695 * 0.02562 * 14 13 12 16 16 C 1.50700 * 109.47266 * 179.97438 * 15 14 13 17 17 N 1.30505 * 126.36853 * 90.01857 * 16 15 14 18 18 N 1.28571 * 109.66274 * 179.97438 * 17 16 15 19 19 C 1.30675 * 109.63862 * 359.95662 * 18 17 16 20 20 N 1.35167 * 107.33106 * 359.87796 * 19 18 17 21 21 C 1.46808 * 111.15513 * 180.02562 * 20 19 18 22 22 C 1.54424 * 105.54903 * 17.22392 * 21 20 19 23 23 C 1.51338 * 142.72507 * 180.25426 * 19 18 17 24 24 N 1.31984 * 120.83321 * 0.25790 * 13 12 11 25 25 H 0.96999 * 119.99550 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.42807 * 0.02562 * 10 9 7 27 27 H 1.07996 * 120.65839 * 179.97438 * 11 10 9 28 28 H 1.07991 * 120.25516 * 180.02562 * 12 11 10 29 29 H 0.96994 * 120.00551 * 180.27523 * 14 13 12 30 30 H 1.09007 * 109.46612 * 299.99451 * 15 14 13 31 31 H 1.09001 * 109.47043 * 59.99098 * 15 14 13 32 32 H 1.08994 * 110.23386 * 136.24773 * 21 20 19 33 33 H 1.09000 * 110.22873 * 258.12669 * 21 20 19 34 34 H 1.09004 * 110.95877 * 92.51133 * 22 21 20 35 35 H 1.08996 * 110.96165 * 216.24212 * 22 21 20 36 36 H 1.09008 * 110.47487 * 282.15190 * 23 19 18 37 37 H 1.08999 * 110.47477 * 44.76182 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3837 2.1071 -1.3947 5 1 1.4957 2.6199 0.8029 6 1 3.5877 1.4118 0.5921 7 6 2.0075 -1.2127 -0.0005 8 1 3.0825 -1.2157 0.1029 9 6 1.3073 -2.4327 -0.1363 10 6 2.0213 -3.6367 -0.2681 11 6 1.3224 -4.8234 -0.4007 12 6 -0.0633 -4.7833 -0.3995 13 6 -0.7159 -3.5546 -0.2659 14 7 -2.1035 -3.5120 -0.2650 15 6 -2.8744 -4.7502 -0.4029 16 6 -4.3470 -4.4314 -0.3712 17 7 -5.1008 -4.1531 -1.3996 18 7 -6.3050 -3.9334 -1.0064 19 6 -6.3735 -4.0627 0.2922 20 7 -5.1362 -4.3849 0.7306 21 6 -5.1176 -4.5519 2.1890 22 6 -6.5947 -4.7258 2.6046 23 6 -7.3319 -3.9871 1.4610 24 7 -0.0296 -2.4336 -0.1462 25 1 -0.4849 0.8401 0.0004 26 1 3.1012 -3.6353 -0.2658 27 1 1.8461 -5.7623 -0.5039 28 1 -0.6341 -5.6943 -0.5009 29 1 -2.5627 -2.6622 -0.1767 30 1 -2.6263 -5.2291 -1.3502 31 1 -2.6309 -5.4233 0.4192 32 1 -4.5430 -5.4376 2.4597 33 1 -4.6928 -3.6677 2.6642 34 1 -6.8693 -5.7803 2.6358 35 1 -6.7892 -4.2453 3.5634 36 1 -7.5258 -2.9483 1.7285 37 1 -8.2634 -4.5010 1.2241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324086405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:29 Heat of formation + Delta-G solvation = 132.536104 kcal Electronic energy + Delta-G solvation = -21406.784632 eV Core-core repulsion = 18185.895806 eV Total energy + Delta-G solvation = -3220.888826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.43582 -38.31804 -37.44040 -35.41214 -33.41105 -32.33622 -30.62275 -30.14075 -29.07266 -27.83469 -25.57336 -25.34022 -22.85365 -21.63033 -21.14032 -20.92030 -20.27443 -17.50823 -17.12818 -16.87678 -15.89132 -15.24743 -14.96478 -14.65462 -14.56267 -14.08092 -13.79488 -13.73397 -13.47909 -13.27244 -13.14811 -12.52308 -12.11962 -12.00467 -11.84969 -11.79581 -11.35425 -11.22323 -11.00594 -10.65821 -10.49664 -10.38181 -10.17306 -9.96319 -9.53623 -9.11023 -8.96473 -7.95367 -7.54669 -6.61274 -6.36225 -4.49936 1.67623 2.33224 2.78836 2.85219 3.10780 3.14085 3.19581 3.27519 3.50248 3.96886 3.97560 4.13684 4.30482 4.36234 4.48939 4.80641 4.93475 5.02458 5.08419 5.19101 5.31829 5.47549 5.54756 5.70625 5.94862 6.06706 6.10994 6.13509 6.50586 6.72144 6.79490 6.84293 6.88405 7.21807 7.53448 7.75151 7.86195 8.11713 8.28935 8.58257 8.72538 8.76888 9.06487 10.20495 10.37195 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.004030 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.111509 B = 6946.638639 C = 7696.020801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.293 3.707 10 C -0.313 4.313 11 C -0.031 4.031 12 C -0.368 4.368 13 C 0.413 3.587 14 N -0.735 5.735 15 C 0.232 3.768 16 C 0.191 3.809 17 N -0.270 5.270 18 N -0.283 5.283 19 C 0.151 3.849 20 N -0.485 5.485 21 C 0.100 3.900 22 C -0.128 4.128 23 C -0.038 4.038 24 N -0.530 5.530 25 H 0.270 0.730 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 -7.268 7.892 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.102 0.898 9 C 0.166 3.834 10 C -0.336 4.336 11 C -0.055 4.055 12 C -0.394 4.394 13 C 0.173 3.827 14 N -0.374 5.374 15 C 0.104 3.896 16 C -0.075 4.075 17 N -0.110 5.110 18 N -0.124 5.124 19 C -0.117 4.117 20 N -0.177 5.177 21 C -0.022 4.022 22 C -0.166 4.166 23 C -0.078 4.078 24 N -0.251 5.251 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.102 -6.337 6.518 15.947 hybrid contribution 1.090 -0.010 1.142 1.578 sum -12.012 -6.347 7.660 15.597 Atomic orbital electron populations 1.70148 1.07211 1.27436 1.28912 1.26055 0.94831 1.00983 0.93514 0.86353 0.80553 0.81070 0.79057 1.19494 1.20261 1.18523 1.19604 0.94616 0.89520 1.42859 0.89769 1.18199 0.86699 0.91849 0.86672 1.21560 0.98508 0.93783 1.19771 1.20590 0.93364 0.96404 0.95129 1.20578 0.94711 0.95709 1.28435 1.18400 0.83525 0.90482 0.90251 1.44000 1.02925 1.06841 1.83594 1.19236 0.78978 0.88572 1.02833 1.24601 0.96786 1.04841 0.81238 1.74489 0.96705 1.16633 1.23221 1.74009 1.12569 1.19249 1.06529 1.25974 0.88059 1.03621 0.94040 1.47220 1.10335 1.51135 1.09044 1.22459 0.99457 1.04681 0.75596 1.22857 0.91887 1.02579 0.99310 1.20695 0.96436 1.03155 0.87544 1.68171 1.07962 1.24057 1.24940 0.91902 0.88589 0.88795 0.89174 0.76775 0.89351 0.91301 0.88428 0.88317 0.89188 0.87723 0.87936 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.26 11.48 55.55 0.64 -18.62 16 2 C 0.07 1.84 5.49 -17.35 -0.10 1.74 16 3 Si 0.91 18.85 29.56 -169.99 -5.03 13.83 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.43 -11.77 9.13 -37.74 -0.34 -12.11 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 9 C 0.29 8.14 6.54 -85.00 -0.56 7.58 16 10 C -0.31 -7.86 9.83 -38.65 -0.38 -8.24 16 11 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 12 C -0.37 -8.34 9.34 -38.87 -0.36 -8.71 16 13 C 0.41 10.06 7.65 -155.31 -1.19 8.88 16 14 N -0.73 -15.13 5.71 -61.57 -0.35 -15.49 16 15 C 0.23 3.82 5.51 -5.19 -0.03 3.79 16 16 C 0.19 3.11 7.67 -154.89 -1.19 1.92 16 17 N -0.27 -5.05 12.21 32.81 0.40 -4.64 16 18 N -0.28 -4.92 12.22 32.92 0.40 -4.52 16 19 C 0.15 2.00 8.69 -154.84 -1.35 0.66 16 20 N -0.49 -6.33 3.62 -109.39 -0.40 -6.73 16 21 C 0.10 0.82 7.77 -3.13 -0.02 0.80 16 22 C -0.13 -0.63 7.18 -25.02 -0.18 -0.81 16 23 C -0.04 -0.28 6.86 -26.61 -0.18 -0.46 16 24 N -0.53 -14.69 7.91 -10.32 -0.08 -14.77 16 25 H 0.27 6.63 8.29 -40.82 -0.34 6.29 16 26 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.09 1.78 6.68 -52.49 -0.35 1.43 16 29 H 0.40 8.61 8.58 -40.82 -0.35 8.26 16 30 H 0.09 1.47 7.92 -51.93 -0.41 1.05 16 31 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -33.88 318.08 -10.35 -44.23 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.45 Total: 7.99 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -6.28 Total: -6.06 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 0.61 Total: -64.78 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.88 -10.35 -44.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324086405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.761 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds