Wall clock time and date at job start Tue Mar 31 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86796 * 120.00583 * 2 1 4 4 H 1.48492 * 109.47232 * 274.98897 * 3 2 1 5 5 H 1.48506 * 109.46804 * 34.98770 * 3 2 1 6 6 H 1.48494 * 109.47148 * 154.98272 * 3 2 1 7 7 C 1.40027 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00416 * 186.35245 * 7 2 1 9 9 C 1.41321 * 119.99920 * 6.34222 * 7 2 1 10 10 C 1.40596 * 119.78134 * 173.77811 * 9 7 2 11 11 C 1.38355 * 119.14330 * 180.02562 * 10 9 7 12 12 C 1.38634 * 118.68302 * 0.02562 * 11 10 9 13 13 C 1.39757 * 119.49009 * 0.02562 * 12 11 10 14 14 N 1.38831 * 119.58637 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99695 * 0.02562 * 14 13 12 16 16 C 1.50700 * 109.47266 * 179.97438 * 15 14 13 17 17 N 1.30505 * 126.36853 * 90.01857 * 16 15 14 18 18 N 1.28571 * 109.66274 * 179.97438 * 17 16 15 19 19 C 1.30675 * 109.63862 * 359.95662 * 18 17 16 20 20 N 1.35167 * 107.33106 * 359.87796 * 19 18 17 21 21 C 1.46808 * 111.15513 * 180.02562 * 20 19 18 22 22 C 1.54424 * 105.54903 * 17.22392 * 21 20 19 23 23 C 1.51338 * 142.72507 * 180.25426 * 19 18 17 24 24 N 1.31984 * 120.83321 * 0.25790 * 13 12 11 25 25 H 0.96999 * 119.99550 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.42807 * 0.02562 * 10 9 7 27 27 H 1.07996 * 120.65839 * 179.97438 * 11 10 9 28 28 H 1.07991 * 120.25516 * 180.02562 * 12 11 10 29 29 H 0.96994 * 120.00551 * 180.27523 * 14 13 12 30 30 H 1.09007 * 109.46612 * 299.99451 * 15 14 13 31 31 H 1.09001 * 109.47043 * 59.99098 * 15 14 13 32 32 H 1.08994 * 110.23386 * 136.24773 * 21 20 19 33 33 H 1.09000 * 110.22873 * 258.12669 * 21 20 19 34 34 H 1.09004 * 110.95877 * 92.51133 * 22 21 20 35 35 H 1.08996 * 110.96165 * 216.24212 * 22 21 20 36 36 H 1.09008 * 110.47487 * 282.15190 * 23 19 18 37 37 H 1.08999 * 110.47477 * 44.76182 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3837 2.1071 -1.3947 5 1 1.4957 2.6199 0.8029 6 1 3.5877 1.4118 0.5921 7 6 2.0075 -1.2127 -0.0005 8 1 3.0825 -1.2157 0.1029 9 6 1.3073 -2.4327 -0.1363 10 6 2.0213 -3.6367 -0.2681 11 6 1.3224 -4.8234 -0.4007 12 6 -0.0633 -4.7833 -0.3995 13 6 -0.7159 -3.5546 -0.2659 14 7 -2.1035 -3.5120 -0.2650 15 6 -2.8744 -4.7502 -0.4029 16 6 -4.3470 -4.4314 -0.3712 17 7 -5.1008 -4.1531 -1.3996 18 7 -6.3050 -3.9334 -1.0064 19 6 -6.3735 -4.0627 0.2922 20 7 -5.1362 -4.3849 0.7306 21 6 -5.1176 -4.5519 2.1890 22 6 -6.5947 -4.7258 2.6046 23 6 -7.3319 -3.9871 1.4610 24 7 -0.0296 -2.4336 -0.1462 25 1 -0.4849 0.8401 0.0004 26 1 3.1012 -3.6353 -0.2658 27 1 1.8461 -5.7623 -0.5039 28 1 -0.6341 -5.6943 -0.5009 29 1 -2.5627 -2.6622 -0.1767 30 1 -2.6263 -5.2291 -1.3502 31 1 -2.6309 -5.4233 0.4192 32 1 -4.5430 -5.4376 2.4597 33 1 -4.6928 -3.6677 2.6642 34 1 -6.8693 -5.7803 2.6358 35 1 -6.7892 -4.2453 3.5634 36 1 -7.5258 -2.9483 1.7285 37 1 -8.2634 -4.5010 1.2241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324086405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:27 Heat of formation + Delta-G solvation = 111.500524 kcal Electronic energy + Delta-G solvation = -21407.696803 eV Core-core repulsion = 18185.895806 eV Total energy + Delta-G solvation = -3221.800997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.51711 -40.16604 -38.26672 -37.03994 -35.24284 -33.49972 -32.33705 -31.50628 -30.47519 -28.88969 -27.32852 -26.84993 -23.64876 -23.39364 -22.47264 -22.11299 -21.62667 -19.32510 -18.40335 -18.09627 -17.12167 -16.76876 -16.48709 -16.10733 -15.82830 -15.50750 -15.20032 -14.95258 -14.66270 -14.33167 -14.17476 -13.94426 -13.83230 -13.49389 -12.91285 -12.74551 -12.62817 -12.58076 -12.50623 -12.28131 -12.24556 -11.76175 -11.55028 -11.32312 -11.08651 -10.75167 -10.26881 -9.87281 -9.47718 -8.41661 -8.26555 -6.49922 0.57002 1.03099 1.31977 1.39974 1.40821 1.54075 1.56388 1.60312 2.23266 2.58728 2.74692 2.89866 3.16990 3.41099 3.71220 3.87571 3.98620 4.08107 4.28038 4.35940 4.40031 4.48183 4.54696 4.74330 4.78903 4.81708 4.94451 4.98846 4.99618 5.05461 5.07688 5.13449 5.31380 5.67464 5.75821 5.93767 6.01108 6.18501 6.45647 6.71695 6.85547 7.13438 7.56248 8.29917 8.48156 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.004030 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.111509 B = 6946.638639 C = 7696.020801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.472 4.472 8 H 0.089 0.911 9 C 0.260 3.740 10 C -0.338 4.338 11 C -0.027 4.027 12 C -0.363 4.363 13 C 0.396 3.604 14 N -0.731 5.731 15 C 0.238 3.762 16 C 0.178 3.822 17 N -0.312 5.312 18 N -0.334 5.334 19 C 0.161 3.839 20 N -0.484 5.484 21 C 0.084 3.916 22 C -0.109 4.109 23 C -0.039 4.039 24 N -0.566 5.566 25 H 0.274 0.726 26 H 0.105 0.895 27 H 0.134 0.866 28 H 0.123 0.877 29 H 0.388 0.612 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.052 -8.191 9.756 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.504 4.504 8 H 0.107 0.893 9 C 0.133 3.867 10 C -0.361 4.361 11 C -0.051 4.051 12 C -0.389 4.389 13 C 0.156 3.844 14 N -0.367 5.367 15 C 0.111 3.889 16 C -0.089 4.089 17 N -0.153 5.153 18 N -0.174 5.174 19 C -0.109 4.109 20 N -0.176 5.176 21 C -0.036 4.036 22 C -0.146 4.146 23 C -0.079 4.079 24 N -0.288 5.288 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.151 0.849 28 H 0.141 0.859 29 H 0.221 0.779 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.944 -7.308 8.403 17.846 hybrid contribution 1.222 0.138 0.604 1.370 sum -12.722 -7.170 9.008 17.158 Atomic orbital electron populations 1.70258 1.08915 1.28607 1.30004 1.26968 0.95642 1.04457 0.92413 0.85157 0.79273 0.75926 0.79085 1.19233 1.19338 1.17560 1.19966 0.95115 0.90604 1.44665 0.89312 1.18669 0.87364 0.93256 0.87446 1.21734 0.99157 0.94057 1.21155 1.21029 0.93605 0.97221 0.93271 1.20958 0.95102 0.96242 1.26563 1.18808 0.84847 0.90652 0.90079 1.44111 1.01894 1.07928 1.82796 1.19306 0.78931 0.87036 1.03614 1.24363 0.96602 1.05725 0.82255 1.74355 0.97749 1.17930 1.25256 1.73869 1.12460 1.21884 1.09236 1.27071 0.89550 1.00387 0.93847 1.47520 1.09629 1.50051 1.10357 1.22969 1.02482 1.05417 0.72699 1.22945 0.88418 1.03729 0.99544 1.21103 0.96168 1.04887 0.85696 1.68120 1.08422 1.25991 1.26313 0.91518 0.87698 0.84852 0.85863 0.77852 0.89524 0.88851 0.86975 0.88302 0.87544 0.84344 0.86383 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.01 11.48 21.84 0.25 -41.76 16 2 C 0.03 1.40 5.49 85.29 0.47 1.87 16 3 Si 0.99 39.28 29.56 68.60 2.03 41.31 16 4 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.47 -26.36 9.13 23.46 0.21 -26.14 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.26 14.86 6.54 40.19 0.26 15.12 16 10 C -0.34 -17.08 9.83 22.87 0.22 -16.86 16 11 C -0.03 -1.20 10.15 22.39 0.23 -0.97 16 12 C -0.36 -15.93 9.34 22.73 0.21 -15.72 16 13 C 0.40 19.46 7.65 133.40 1.02 20.48 16 14 N -0.73 -30.46 5.71 -348.70 -1.99 -32.45 16 15 C 0.24 7.71 5.51 85.63 0.47 8.18 16 16 C 0.18 5.81 7.67 137.95 1.06 6.87 16 17 N -0.31 -12.02 12.21 -50.10 -0.61 -12.63 16 18 N -0.33 -11.85 12.22 -49.75 -0.61 -12.46 16 19 C 0.16 4.09 8.69 138.24 1.20 5.29 16 20 N -0.48 -12.08 3.62 -499.99 -1.81 -13.89 16 21 C 0.08 1.16 7.77 86.80 0.67 1.83 16 22 C -0.11 -0.60 7.18 31.70 0.23 -0.37 16 23 C -0.04 -0.44 6.86 30.67 0.21 -0.23 16 24 N -0.57 -32.30 7.91 -186.58 -1.48 -33.78 16 25 H 0.27 13.91 8.29 -92.71 -0.77 13.14 16 26 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 27 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.12 4.51 6.68 -2.92 -0.02 4.49 16 29 H 0.39 17.44 8.58 -92.71 -0.80 16.65 16 30 H 0.09 2.84 7.92 -2.38 -0.02 2.82 16 31 H 0.09 2.56 7.92 -2.39 -0.02 2.54 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.40 318.08 2.56 -75.83 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.31 Total: 30.46 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 6.47 Total: -0.64 kcal Atomic # 7 Polarization: -140.72 SS G_CDS: -6.25 Total: -146.97 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -78.40 2.56 -75.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324086405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.334 kcal (2) G-P(sol) polarization free energy of solvation -78.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds