Wall clock time and date at job start Tue Mar 31 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 116.99570 * 2 1 4 4 O 1.20821 * 120.00644 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99465 * 180.02562 * 3 2 1 6 6 O 1.42902 * 109.46191 * 324.97100 * 5 3 2 7 7 C 1.53042 * 109.45884 * 205.00122 * 5 3 2 8 8 C 1.53186 * 109.31534 * 178.61293 * 7 5 3 9 9 N 1.46926 * 108.77396 * 54.63265 * 8 7 5 10 10 C 1.34780 * 120.62707 * 126.37270 * 9 8 7 11 11 O 1.21280 * 120.00423 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.46921 * 118.74177 * 306.64666 * 9 8 7 23 23 C 1.52760 * 109.00903 * 53.30762 * 22 9 8 24 24 H 1.09002 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46971 * 299.99467 * 1 2 3 26 26 H 1.08997 * 109.47526 * 59.99705 * 1 2 3 27 27 H 0.96700 * 114.00030 * 60.02919 * 6 5 3 28 28 H 1.09008 * 109.49904 * 58.65884 * 7 5 3 29 29 H 1.08998 * 109.49938 * 298.56949 * 7 5 3 30 30 H 1.09005 * 109.58747 * 294.84888 * 8 7 5 31 31 H 1.09001 * 109.70993 * 174.49512 * 8 7 5 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 35 35 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.58649 * 173.14582 * 22 9 8 38 38 H 1.09004 * 109.58204 * 293.57028 * 22 9 8 39 39 H 1.09000 * 109.56394 * 185.56047 * 23 22 9 40 40 H 1.09001 * 109.38512 * 65.51568 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 8 4.0998 0.1978 0.7724 7 6 4.0073 2.6074 0.6094 8 6 5.5376 2.6694 0.6389 9 7 6.0469 2.4290 -0.7181 10 6 6.8958 3.3010 -1.2974 11 8 7.2460 4.2955 -0.6982 12 6 7.4090 3.0406 -2.6902 13 6 8.3476 4.1742 -3.1081 14 6 8.8613 3.9137 -4.5006 15 1 8.5491 3.0282 -5.0345 16 6 9.7290 4.8061 -5.0937 17 7 10.1088 5.8846 -4.4438 18 14 10.3663 4.4827 -6.8196 19 1 9.2228 4.4124 -7.7644 20 1 11.2763 5.5836 -7.2256 21 1 11.1058 3.1951 -6.8410 22 6 5.6084 1.2232 -1.4339 23 6 4.0816 1.1746 -1.4381 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 3.8602 -0.6792 0.4429 28 1 3.6202 2.6884 1.6252 29 1 3.6214 3.4291 0.0061 30 1 5.9213 1.9045 1.3141 31 1 5.8591 3.6532 0.9810 32 1 7.9508 2.0950 -2.7070 33 1 6.5693 2.9906 -3.3834 34 1 7.8055 5.1197 -3.0915 35 1 9.1874 4.2248 -2.4150 36 1 10.7189 6.5126 -4.8611 37 1 5.9745 1.2541 -2.4601 38 1 5.9981 0.3380 -0.9312 39 1 3.7475 0.2357 -1.8796 40 1 3.6947 2.0095 -2.0224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326011471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:12 Heat of formation + Delta-G solvation = -176.870281 kcal Electronic energy + Delta-G solvation = -23107.433653 eV Core-core repulsion = 19501.233538 eV Total energy + Delta-G solvation = -3606.200116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33298 -39.77961 -38.11016 -36.90467 -35.45565 -33.52736 -32.10960 -31.52039 -30.60166 -28.49997 -26.44775 -25.26771 -23.60577 -22.49450 -21.44284 -20.36459 -18.83687 -18.40943 -17.56422 -17.16594 -16.70395 -16.10352 -15.67704 -15.43064 -15.24269 -14.69590 -14.49317 -14.38963 -13.89124 -13.71979 -13.32940 -12.97098 -12.79271 -12.52161 -12.42559 -12.15646 -11.96185 -11.93839 -11.48116 -11.39725 -11.22559 -11.14013 -10.90850 -10.78471 -10.59350 -10.25384 -9.95113 -9.60544 -9.17854 -8.99199 -8.46668 -8.30427 -5.95136 -3.99755 1.71777 2.18276 3.19152 3.25429 3.34706 3.39678 3.41230 3.76604 4.07709 4.21491 4.41699 4.47632 4.69587 4.77375 4.80373 5.01089 5.08850 5.13768 5.25135 5.35472 5.38509 5.39650 5.53165 5.62814 5.76550 5.87815 5.97546 6.06748 6.19358 6.21546 6.70062 6.90200 7.04663 7.31123 7.73128 7.75033 7.87277 8.08221 8.38963 8.73686 9.08554 9.63660 11.15796 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.003291 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.088600 B = 8507.166600 C = 8908.176937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.439 3.561 4 O -0.495 6.495 5 C 0.157 3.843 6 O -0.535 6.535 7 C -0.111 4.111 8 C 0.118 3.882 9 N -0.626 5.626 10 C 0.513 3.487 11 O -0.531 6.531 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.119 3.881 23 C -0.161 4.161 24 H 0.103 0.897 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.386 0.614 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.145 -16.066 9.305 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.280 3.720 4 O -0.381 6.381 5 C 0.115 3.885 6 O -0.341 6.341 7 C -0.149 4.149 8 C -0.005 4.005 9 N -0.363 5.363 10 C 0.304 3.696 11 O -0.406 6.406 12 C -0.169 4.169 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.005 4.005 23 C -0.200 4.200 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.235 0.765 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.802 -14.549 9.959 25.056 hybrid contribution -0.399 -0.658 -1.304 1.514 sum -18.201 -15.208 8.655 25.248 Atomic orbital electron populations 1.23301 0.76047 1.03855 1.02710 1.86468 1.23798 1.33501 1.83883 1.24946 0.92952 0.81724 0.72331 1.90693 1.66833 1.36339 1.44232 1.21157 0.82728 0.90952 0.93699 1.86629 1.75609 1.16784 1.55101 1.21900 0.97675 0.92837 1.02513 1.21402 0.91001 1.03673 0.84417 1.48308 1.47896 1.23986 1.16068 1.21601 0.77045 0.81642 0.89349 1.90663 1.57206 1.27499 1.65250 1.21892 1.01128 1.03677 0.90181 1.18903 0.93567 0.91888 0.95703 1.21176 1.27639 1.07504 1.00293 0.92679 1.25026 0.96395 0.95140 0.97807 1.69990 1.33883 1.11486 1.37447 0.86652 0.78780 0.77763 0.84729 1.20272 1.21297 1.20242 1.21462 0.91762 0.88305 0.98940 1.22582 0.98489 1.04604 0.94290 0.87890 0.91812 0.91751 0.76467 0.89686 0.88805 0.90821 0.88418 0.90190 0.90301 0.95836 0.95794 0.92882 0.88248 0.90646 0.89288 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.06 10.00 -44.42 -0.44 -3.50 16 3 C 0.44 4.65 6.83 36.01 0.25 4.90 16 4 O -0.49 -6.68 15.87 -18.75 -0.30 -6.97 16 5 C 0.16 1.53 0.94 -91.73 -0.09 1.45 16 6 O -0.53 -4.52 11.63 -49.12 -0.57 -5.09 16 7 C -0.11 -1.28 4.62 -26.61 -0.12 -1.40 16 8 C 0.12 1.55 6.20 -3.71 -0.02 1.53 16 9 N -0.63 -9.14 2.98 -173.03 -0.52 -9.66 16 10 C 0.51 9.99 7.70 -10.98 -0.08 9.91 16 11 O -0.53 -12.61 15.39 5.56 0.09 -12.53 16 12 C -0.13 -2.60 3.99 -27.88 -0.11 -2.71 16 13 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 14 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.12 1.26 6.08 -3.94 -0.02 1.24 16 23 C -0.16 -1.44 5.05 -26.83 -0.14 -1.58 16 24 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 27 H 0.39 1.89 8.63 45.56 0.39 2.28 16 28 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.09 1.20 7.92 -51.93 -0.41 0.79 16 30 H 0.07 0.90 7.81 -51.93 -0.41 0.50 16 31 H 0.10 1.46 7.00 -51.93 -0.36 1.10 16 32 H 0.08 1.46 7.95 -51.93 -0.41 1.05 16 33 H 0.08 1.44 7.68 -51.93 -0.40 1.04 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.10 1.04 5.93 -51.93 -0.31 0.73 16 38 H 0.08 0.69 7.81 -51.93 -0.41 0.29 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -36.14 332.62 -6.05 -42.19 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.23 Total: -1.15 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 0.20 Total: 1.86 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.22 Total: -36.41 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.23 Total: -28.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.14 -6.05 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326011471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.682 kcal (2) G-P(sol) polarization free energy of solvation -36.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds