Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 116.99570 * 2 1 4 4 O 1.20821 * 120.00644 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99465 * 180.02562 * 3 2 1 6 6 O 1.42902 * 109.46191 * 324.97100 * 5 3 2 7 7 C 1.53042 * 109.45884 * 205.00122 * 5 3 2 8 8 C 1.53186 * 109.31534 * 178.61293 * 7 5 3 9 9 N 1.46926 * 108.77396 * 54.63265 * 8 7 5 10 10 C 1.34780 * 120.62707 * 126.37270 * 9 8 7 11 11 O 1.21280 * 120.00423 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.46921 * 118.74177 * 306.64666 * 9 8 7 23 23 C 1.52760 * 109.00903 * 53.30762 * 22 9 8 24 24 H 1.09002 * 109.47267 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46971 * 299.99467 * 1 2 3 26 26 H 1.08997 * 109.47526 * 59.99705 * 1 2 3 27 27 H 0.96700 * 114.00030 * 60.02919 * 6 5 3 28 28 H 1.09008 * 109.49904 * 58.65884 * 7 5 3 29 29 H 1.08998 * 109.49938 * 298.56949 * 7 5 3 30 30 H 1.09005 * 109.58747 * 294.84888 * 8 7 5 31 31 H 1.09001 * 109.70993 * 174.49512 * 8 7 5 32 32 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 33 33 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 34 34 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 35 35 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.58649 * 173.14582 * 22 9 8 38 38 H 1.09004 * 109.58204 * 293.57028 * 22 9 8 39 39 H 1.09000 * 109.56394 * 185.56047 * 23 22 9 40 40 H 1.09001 * 109.38512 * 65.51568 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 8 4.0998 0.1978 0.7724 7 6 4.0073 2.6074 0.6094 8 6 5.5376 2.6694 0.6389 9 7 6.0469 2.4290 -0.7181 10 6 6.8958 3.3010 -1.2974 11 8 7.2460 4.2955 -0.6982 12 6 7.4090 3.0406 -2.6902 13 6 8.3476 4.1742 -3.1081 14 6 8.8613 3.9137 -4.5006 15 1 8.5491 3.0282 -5.0345 16 6 9.7290 4.8061 -5.0937 17 7 10.1088 5.8846 -4.4438 18 14 10.3663 4.4827 -6.8196 19 1 9.2228 4.4124 -7.7644 20 1 11.2763 5.5836 -7.2256 21 1 11.1058 3.1951 -6.8410 22 6 5.6084 1.2232 -1.4339 23 6 4.0816 1.1746 -1.4381 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 3.8602 -0.6792 0.4429 28 1 3.6202 2.6884 1.6252 29 1 3.6214 3.4291 0.0061 30 1 5.9213 1.9045 1.3141 31 1 5.8591 3.6532 0.9810 32 1 7.9508 2.0950 -2.7070 33 1 6.5693 2.9906 -3.3834 34 1 7.8055 5.1197 -3.0915 35 1 9.1874 4.2248 -2.4150 36 1 10.7189 6.5126 -4.8611 37 1 5.9745 1.2541 -2.4601 38 1 5.9981 0.3380 -0.9312 39 1 3.7475 0.2357 -1.8796 40 1 3.6947 2.0095 -2.0224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326011471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = -203.725973 kcal Electronic energy + Delta-G solvation = -23108.598203 eV Core-core repulsion = 19501.233538 eV Total energy + Delta-G solvation = -3607.364666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.16917 -40.98923 -39.18345 -37.68720 -36.52196 -35.59059 -33.48312 -32.57932 -32.11140 -29.16917 -28.00983 -26.57612 -24.69159 -23.77740 -22.78393 -21.40861 -20.00605 -19.27120 -18.86964 -18.31115 -17.77729 -17.43907 -16.78075 -16.74723 -16.50287 -16.32969 -15.52144 -15.19288 -15.14483 -14.72878 -14.47457 -14.19435 -14.07567 -13.89842 -13.48548 -13.27431 -13.20220 -13.00669 -12.76040 -12.70274 -12.49464 -12.42285 -12.26913 -11.89959 -11.88151 -11.70065 -11.51773 -11.30153 -11.03929 -10.65218 -10.54217 -9.67783 -8.15977 -6.30265 0.91606 1.43610 1.47417 1.48357 1.55961 1.70610 2.03060 2.44985 3.07370 3.17032 3.28752 3.42997 3.65214 3.80827 3.94129 4.22576 4.26456 4.29127 4.30393 4.43825 4.47841 4.52284 4.57086 4.63264 4.69503 4.75888 4.82136 4.94098 5.08614 5.14492 5.21558 5.49716 5.59683 5.64487 5.87047 6.18976 6.39432 6.45975 6.69231 6.88407 7.26420 7.40151 8.96672 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.003291 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.088600 B = 8507.166600 C = 8908.176937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.444 3.556 4 O -0.531 6.531 5 C 0.165 3.835 6 O -0.536 6.536 7 C -0.108 4.108 8 C 0.120 3.880 9 N -0.614 5.614 10 C 0.510 3.490 11 O -0.590 6.590 12 C -0.115 4.115 13 C 0.042 3.958 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.939 5.939 18 Si 0.975 3.025 19 H -0.262 1.262 20 H -0.290 1.290 21 H -0.261 1.261 22 C 0.110 3.890 23 C -0.155 4.155 24 H 0.137 0.863 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.405 0.595 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.104 0.896 34 H -0.021 1.021 35 H -0.019 1.019 36 H 0.262 0.738 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.349 -19.811 7.975 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.287 3.713 4 O -0.420 6.420 5 C 0.122 3.878 6 O -0.346 6.346 7 C -0.146 4.146 8 C -0.003 4.003 9 N -0.348 5.348 10 C 0.300 3.700 11 O -0.470 6.470 12 C -0.155 4.155 13 C 0.004 3.996 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.216 1.216 21 H -0.185 1.185 22 C -0.012 4.012 23 C -0.193 4.193 24 H 0.155 0.845 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.257 0.743 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.122 0.878 34 H -0.002 1.002 35 H -0.001 1.001 36 H 0.071 0.929 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.145 0.855 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.060 -18.402 8.630 27.864 hybrid contribution -0.115 0.425 -0.793 0.907 sum -19.175 -17.977 7.837 27.427 Atomic orbital electron populations 1.23592 0.74640 1.06010 1.02393 1.86457 1.25093 1.32069 1.83184 1.25044 0.93159 0.81770 0.71369 1.90690 1.67634 1.37632 1.46030 1.20879 0.82441 0.90379 0.94089 1.86610 1.75332 1.17556 1.55055 1.21774 0.96024 0.93953 1.02887 1.21438 0.92239 1.02845 0.83760 1.48274 1.45947 1.24039 1.16528 1.21459 0.77726 0.81647 0.89122 1.90644 1.59773 1.30167 1.66421 1.21652 1.00799 1.01811 0.91236 1.18693 0.93095 0.92715 0.95054 1.21693 1.27376 1.08156 1.00750 0.90310 1.26165 0.96711 0.94695 1.03005 1.70186 1.34900 1.12937 1.39928 0.85362 0.78388 0.77963 0.78460 1.18634 1.21567 1.18503 1.21850 0.93058 0.87041 0.99208 1.22569 0.96937 1.06132 0.93679 0.84491 0.92304 0.92018 0.74295 0.89057 0.90614 0.89137 0.91052 0.87451 0.87761 1.00237 1.00055 0.92913 0.87499 0.87947 0.85466 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -4.92 10.00 -46.45 -0.46 -5.38 16 3 C 0.44 8.50 6.83 71.24 0.49 8.98 16 4 O -0.53 -13.94 15.87 21.98 0.35 -13.59 16 5 C 0.17 2.82 0.94 -11.51 -0.01 2.81 16 6 O -0.54 -7.09 11.63 -135.70 -1.58 -8.67 16 7 C -0.11 -2.43 4.62 30.67 0.14 -2.29 16 8 C 0.12 3.13 6.20 86.36 0.54 3.66 16 9 N -0.61 -17.35 2.98 -819.75 -2.44 -19.79 16 10 C 0.51 20.23 7.70 87.66 0.67 20.91 16 11 O -0.59 -29.80 15.39 -3.03 -0.05 -29.85 16 12 C -0.12 -4.60 3.99 29.85 0.12 -4.48 16 13 C 0.04 2.36 4.26 29.85 0.13 2.48 16 14 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 15 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 16 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 17 N -0.94 -60.09 13.29 21.45 0.28 -59.80 16 18 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 C 0.11 1.97 6.08 86.22 0.52 2.49 16 23 C -0.15 -2.27 5.05 30.53 0.15 -2.11 16 24 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 26 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 27 H 0.40 2.07 8.63 -74.06 -0.64 1.43 16 28 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.08 1.98 7.92 -2.39 -0.02 1.97 16 30 H 0.09 2.09 7.81 -2.38 -0.02 2.07 16 31 H 0.07 2.26 7.00 -2.39 -0.02 2.25 16 32 H 0.11 3.68 7.95 -2.39 -0.02 3.66 16 33 H 0.10 3.61 7.68 -2.39 -0.02 3.59 16 34 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 35 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 36 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 37 H 0.11 1.81 5.93 -2.39 -0.01 1.79 16 38 H 0.10 1.39 7.81 -2.38 -0.02 1.37 16 39 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -83.52 332.62 3.18 -80.34 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.41 Total: 7.20 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.64 Total: 3.43 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.16 Total: -79.59 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.74 Total: -57.49 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -83.52 3.18 -80.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326011471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.387 kcal (2) G-P(sol) polarization free energy of solvation -83.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds