Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99657 * 2 1 4 4 C 1.50701 * 109.47084 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99464 * 359.97438 * 4 3 2 6 6 N 1.34766 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00374 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47520 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 180.02562 * 8 7 6 10 10 O 1.20830 * 119.99781 * 359.97438 * 9 8 7 11 11 O 1.34230 * 120.00112 * 180.02562 * 9 8 7 12 12 C 1.45191 * 116.99982 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47136 * 179.97438 * 12 11 9 14 14 C 1.50706 * 115.55019 * 65.10585 * 13 12 11 15 15 H 1.07995 * 120.00203 * 266.11021 * 14 13 12 16 16 C 1.37875 * 119.99835 * 86.10831 * 14 13 12 17 17 N 1.31515 * 120.00131 * 353.70635 * 16 14 13 18 18 Si 1.86799 * 119.99942 * 173.70111 * 16 14 13 19 19 H 1.48499 * 109.46896 * 90.00107 * 18 16 14 20 20 H 1.48501 * 109.47464 * 210.00255 * 18 16 14 21 21 H 1.48505 * 109.47150 * 330.00422 * 18 16 14 22 22 C 1.52995 * 117.50110 * 279.43693 * 13 12 11 23 23 C 1.53002 * 117.49957 * 210.77690 * 13 12 11 24 24 H 1.08999 * 109.47318 * 299.99964 * 1 2 3 25 25 H 1.08992 * 109.46992 * 60.00529 * 1 2 3 26 26 H 1.09005 * 109.46602 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47454 * 59.99861 * 3 2 1 28 28 H 1.09005 * 109.46412 * 299.99725 * 3 2 1 29 29 H 0.97003 * 120.00338 * 359.97438 * 6 4 3 30 30 H 1.09007 * 109.46809 * 59.99276 * 7 6 4 31 31 H 1.08997 * 109.47000 * 300.00046 * 7 6 4 32 32 H 1.08995 * 109.47094 * 60.00251 * 8 7 6 33 33 H 1.09007 * 109.47220 * 300.00207 * 8 7 6 34 34 H 1.09002 * 109.47695 * 299.99636 * 12 11 9 35 35 H 1.09002 * 109.47238 * 60.00050 * 12 11 9 36 36 H 0.97003 * 120.00012 * 179.97438 * 17 16 14 37 37 H 1.09004 * 117.49491 * 359.97438 * 22 13 12 38 38 H 1.09005 * 117.50144 * 145.01675 * 22 13 12 39 39 H 1.09003 * 117.49588 * 214.97992 * 23 13 12 40 40 H 1.08998 * 117.49796 * 359.97243 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0917 -0.0006 6 7 4.2763 2.2969 -0.0002 7 6 5.7368 2.1814 -0.0003 8 6 6.3590 3.5792 -0.0004 9 6 7.8613 3.4602 -0.0011 10 8 8.3810 2.3694 -0.0010 11 8 8.6221 4.5661 -0.0008 12 6 10.0615 4.3759 -0.0009 13 6 10.7561 5.7392 -0.0012 14 6 10.5413 6.5783 1.2321 15 1 9.7464 7.3090 1.2564 16 6 11.3597 6.4132 2.3293 17 7 12.2462 5.4420 2.3483 18 14 11.2094 7.5692 3.7890 19 1 10.2221 7.0221 4.7540 20 1 12.5306 7.7014 4.4539 21 1 10.7558 8.9030 3.3194 22 6 10.8784 6.4695 -1.3400 23 6 12.1157 5.8392 -0.6958 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8463 -0.8901 29 1 3.8592 3.1727 0.0001 30 1 6.0584 1.6407 -0.8905 31 1 6.0584 1.6402 0.8895 32 1 6.0374 4.1201 0.8895 33 1 6.0373 4.1201 -0.8904 34 1 10.3546 3.8187 0.8889 35 1 10.3544 3.8192 -0.8911 36 1 12.8222 5.3260 3.1201 37 1 10.4644 5.9785 -2.2207 38 1 10.8039 7.5569 -1.3288 39 1 12.8546 6.5123 -0.2609 40 1 12.5155 4.9337 -1.1521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327070435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -145.619229 kcal Electronic energy + Delta-G solvation = -21784.079177 eV Core-core repulsion = 18179.234209 eV Total energy + Delta-G solvation = -3604.844968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16679 -39.70423 -37.81041 -36.91663 -35.54416 -35.08388 -31.99726 -31.60641 -29.12579 -27.07055 -26.24392 -25.32057 -23.73478 -21.23141 -21.04432 -20.15758 -19.29770 -17.65216 -17.36400 -16.81521 -16.74096 -16.50086 -16.16859 -15.58892 -15.09179 -15.04365 -14.67564 -14.58493 -14.05166 -13.74323 -13.30152 -13.04843 -12.67246 -12.31334 -12.16184 -11.95167 -11.86396 -11.61230 -11.54191 -11.01512 -10.90541 -10.56890 -10.33024 -10.21391 -10.16719 -10.00519 -9.91251 -9.60099 -9.31762 -8.86234 -8.50366 -8.25391 -6.10487 -4.16189 2.38093 2.41570 2.65820 3.25205 3.29490 3.33106 3.36007 3.78809 4.35574 4.38275 4.60311 4.69280 4.73560 4.90874 4.92976 4.96314 5.07778 5.19515 5.26777 5.30361 5.50769 5.72596 5.84986 5.94541 6.11615 6.20572 6.29418 6.48479 6.56172 6.61005 6.69232 7.00037 7.18362 7.22061 7.32425 7.43452 7.82531 7.97999 8.28682 8.37847 8.85520 9.49869 10.98821 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025526 B = 0.002723 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.664932 B =10281.889104 C =10823.079375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.514 6.514 6 N -0.730 5.730 7 C 0.132 3.868 8 C -0.127 4.127 9 C 0.457 3.543 10 O -0.519 6.519 11 O -0.336 6.336 12 C 0.115 3.885 13 C 0.036 3.964 14 C -0.491 4.491 15 H 0.063 0.937 16 C 0.068 3.932 17 N -0.881 5.881 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.205 4.205 23 C -0.144 4.144 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.402 0.598 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.251 -2.788 -5.239 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.296 3.704 5 O -0.388 6.388 6 N -0.385 5.385 7 C 0.009 3.991 8 C -0.165 4.165 9 C 0.300 3.700 10 O -0.409 6.409 11 O -0.251 6.251 12 C 0.042 3.958 13 C 0.036 3.964 14 C -0.528 4.528 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.242 4.242 23 C -0.182 4.182 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.236 0.764 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.390 -4.166 -5.119 20.482 hybrid contribution -0.256 1.202 0.869 1.505 sum -19.645 -2.964 -4.250 20.317 Atomic orbital electron populations 1.22849 0.80280 1.03411 1.00145 1.88033 1.19849 1.25153 1.95426 1.22233 0.91512 0.87108 1.02750 1.20228 0.88657 0.84552 0.76944 1.90775 1.74547 1.26436 1.47057 1.45815 1.07126 1.08860 1.76651 1.21108 0.77802 0.95686 1.04550 1.21410 0.89908 0.98750 1.06426 1.23092 0.90459 0.83292 0.73204 1.90668 1.75444 1.28721 1.46041 1.86502 1.22365 1.34356 1.81926 1.22941 0.73161 0.99325 1.00331 1.18788 0.94904 0.91406 0.91349 1.20369 1.15806 1.19877 0.96766 0.91874 1.25029 0.95088 0.95132 0.98279 1.69999 1.21764 1.29755 1.30187 0.86584 0.77439 0.81426 0.82516 1.20614 1.21143 1.19747 1.23014 1.04634 0.99296 0.97294 1.22539 0.91715 1.00813 1.03121 0.93741 0.93757 0.89041 0.90056 0.90102 0.76413 0.90189 0.90070 0.87058 0.87308 0.90515 0.94191 0.92848 0.91553 0.90049 0.89381 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.86 10.24 -55.14 -0.56 -4.42 16 3 C 0.04 0.34 6.42 36.01 0.23 0.57 16 4 C 0.51 5.88 7.91 -10.99 -0.09 5.79 16 5 O -0.51 -8.77 16.50 -14.35 -0.24 -9.00 16 6 N -0.73 -6.56 5.56 -60.30 -0.33 -6.90 16 7 C 0.13 1.58 4.96 -4.04 -0.02 1.56 16 8 C -0.13 -1.44 5.93 -27.88 -0.17 -1.60 16 9 C 0.46 8.11 7.96 36.01 0.29 8.39 16 10 O -0.52 -10.75 15.73 -18.75 -0.30 -11.05 16 11 O -0.34 -6.98 10.16 -39.26 -0.40 -7.38 16 12 C 0.12 2.69 5.29 37.16 0.20 2.88 16 13 C 0.04 0.88 1.62 -155.66 -0.25 0.63 16 14 C -0.49 -13.09 8.78 -34.44 -0.30 -13.39 16 15 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 16 C 0.07 1.83 5.38 -17.82 -0.10 1.73 16 17 N -0.88 -24.61 12.88 55.43 0.71 -23.89 16 18 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.21 -4.36 9.96 -26.70 -0.27 -4.63 16 23 C -0.14 -3.30 9.37 -26.69 -0.25 -3.55 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.40 2.00 8.47 -40.82 -0.35 1.65 16 30 H 0.08 1.09 8.10 -51.92 -0.42 0.67 16 31 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.08 1.98 8.13 -51.93 -0.42 1.56 16 35 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -34.89 353.08 -6.65 -41.54 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.22 Total: 0.44 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 0.39 Total: -0.33 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.38 Total: -30.79 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.49 Total: -31.85 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.89 -6.65 -41.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327070435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.080 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds