Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99657 * 2 1 4 4 C 1.50701 * 109.47084 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99464 * 359.97438 * 4 3 2 6 6 N 1.34766 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00374 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47520 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47148 * 180.02562 * 8 7 6 10 10 O 1.20830 * 119.99781 * 359.97438 * 9 8 7 11 11 O 1.34230 * 120.00112 * 180.02562 * 9 8 7 12 12 C 1.45191 * 116.99982 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47136 * 179.97438 * 12 11 9 14 14 C 1.50706 * 115.55019 * 65.10585 * 13 12 11 15 15 H 1.07995 * 120.00203 * 266.11021 * 14 13 12 16 16 C 1.37875 * 119.99835 * 86.10831 * 14 13 12 17 17 N 1.31515 * 120.00131 * 353.70635 * 16 14 13 18 18 Si 1.86799 * 119.99942 * 173.70111 * 16 14 13 19 19 H 1.48499 * 109.46896 * 90.00107 * 18 16 14 20 20 H 1.48501 * 109.47464 * 210.00255 * 18 16 14 21 21 H 1.48505 * 109.47150 * 330.00422 * 18 16 14 22 22 C 1.52995 * 117.50110 * 279.43693 * 13 12 11 23 23 C 1.53002 * 117.49957 * 210.77690 * 13 12 11 24 24 H 1.08999 * 109.47318 * 299.99964 * 1 2 3 25 25 H 1.08992 * 109.46992 * 60.00529 * 1 2 3 26 26 H 1.09005 * 109.46602 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47454 * 59.99861 * 3 2 1 28 28 H 1.09005 * 109.46412 * 299.99725 * 3 2 1 29 29 H 0.97003 * 120.00338 * 359.97438 * 6 4 3 30 30 H 1.09007 * 109.46809 * 59.99276 * 7 6 4 31 31 H 1.08997 * 109.47000 * 300.00046 * 7 6 4 32 32 H 1.08995 * 109.47094 * 60.00251 * 8 7 6 33 33 H 1.09007 * 109.47220 * 300.00207 * 8 7 6 34 34 H 1.09002 * 109.47695 * 299.99636 * 12 11 9 35 35 H 1.09002 * 109.47238 * 60.00050 * 12 11 9 36 36 H 0.97003 * 120.00012 * 179.97438 * 17 16 14 37 37 H 1.09004 * 117.49491 * 359.97438 * 22 13 12 38 38 H 1.09005 * 117.50144 * 145.01675 * 22 13 12 39 39 H 1.09003 * 117.49588 * 214.97992 * 23 13 12 40 40 H 1.08998 * 117.49796 * 359.97243 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0917 -0.0006 6 7 4.2763 2.2969 -0.0002 7 6 5.7368 2.1814 -0.0003 8 6 6.3590 3.5792 -0.0004 9 6 7.8613 3.4602 -0.0011 10 8 8.3810 2.3694 -0.0010 11 8 8.6221 4.5661 -0.0008 12 6 10.0615 4.3759 -0.0009 13 6 10.7561 5.7392 -0.0012 14 6 10.5413 6.5783 1.2321 15 1 9.7464 7.3090 1.2564 16 6 11.3597 6.4132 2.3293 17 7 12.2462 5.4420 2.3483 18 14 11.2094 7.5692 3.7890 19 1 10.2221 7.0221 4.7540 20 1 12.5306 7.7014 4.4539 21 1 10.7558 8.9030 3.3194 22 6 10.8784 6.4695 -1.3400 23 6 12.1157 5.8392 -0.6958 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8465 0.8899 28 1 1.6885 1.8463 -0.8901 29 1 3.8592 3.1727 0.0001 30 1 6.0584 1.6407 -0.8905 31 1 6.0584 1.6402 0.8895 32 1 6.0374 4.1201 0.8895 33 1 6.0373 4.1201 -0.8904 34 1 10.3546 3.8187 0.8889 35 1 10.3544 3.8192 -0.8911 36 1 12.8222 5.3260 3.1201 37 1 10.4644 5.9785 -2.2207 38 1 10.8039 7.5569 -1.3288 39 1 12.8546 6.5123 -0.2609 40 1 12.5155 4.9337 -1.1521 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327070435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -169.936280 kcal Electronic energy + Delta-G solvation = -21785.133644 eV Core-core repulsion = 18179.234209 eV Total energy + Delta-G solvation = -3605.899435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49146 -40.78821 -38.70525 -38.40872 -37.05962 -36.27409 -34.01955 -32.61468 -29.85338 -28.65292 -27.37984 -26.79514 -24.82892 -22.97918 -21.99294 -21.46434 -21.18745 -18.71526 -18.54412 -18.18591 -17.69901 -17.62029 -17.24093 -16.97235 -16.60505 -16.17232 -16.08710 -15.58035 -15.37506 -15.02091 -14.68156 -14.04963 -13.92803 -13.79175 -13.58651 -13.14780 -13.03200 -12.88673 -12.81560 -12.55379 -12.37248 -12.33396 -12.08552 -11.73157 -11.66959 -11.40564 -10.97878 -10.76848 -10.74171 -10.49058 -10.23632 -10.08469 -8.13673 -6.25123 1.23625 1.42089 1.44156 1.48100 1.52684 1.54149 2.12262 2.42708 3.14400 3.16439 3.42857 3.52347 3.78331 3.93522 3.98773 4.14893 4.23514 4.31674 4.38608 4.42420 4.50172 4.52861 4.60797 4.66061 4.75324 4.85773 4.86722 4.90099 4.97483 5.19106 5.26305 5.46553 5.59000 5.71946 5.75345 6.06241 6.35629 6.52498 6.80452 6.81618 7.20312 7.43951 8.95165 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025526 B = 0.002723 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.664932 B =10281.889104 C =10823.079375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.048 3.952 4 C 0.504 3.496 5 O -0.582 6.582 6 N -0.707 5.707 7 C 0.138 3.862 8 C -0.107 4.107 9 C 0.451 3.549 10 O -0.556 6.556 11 O -0.343 6.343 12 C 0.127 3.873 13 C 0.003 3.997 14 C -0.502 4.502 15 H 0.060 0.940 16 C 0.020 3.980 17 N -0.912 5.912 18 Si 0.954 3.046 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.174 4.174 23 C -0.150 4.150 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.426 0.574 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.260 0.740 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.906 -0.701 -5.760 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.031 4.031 4 C 0.292 3.708 5 O -0.461 6.461 6 N -0.363 5.363 7 C 0.014 3.986 8 C -0.144 4.144 9 C 0.295 3.705 10 O -0.447 6.447 11 O -0.258 6.258 12 C 0.054 3.946 13 C 0.002 3.998 14 C -0.540 4.540 15 H 0.078 0.922 16 C -0.181 4.181 17 N -0.550 5.550 18 Si 0.779 3.221 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.211 4.211 23 C -0.188 4.188 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.265 0.735 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.095 -2.011 -5.650 22.894 hybrid contribution 0.513 0.524 0.999 1.239 sum -21.582 -1.487 -4.651 22.127 Atomic orbital electron populations 1.23030 0.78155 1.04068 1.01807 1.87973 1.22269 1.27073 1.95849 1.22395 0.88024 0.86751 1.05924 1.21134 0.90620 0.83800 0.75288 1.90748 1.75993 1.29028 1.50288 1.45549 1.05602 1.09810 1.75320 1.20807 0.79753 0.95743 1.02337 1.21468 0.84535 0.98744 1.09668 1.24343 0.92644 0.81994 0.71479 1.90660 1.76558 1.29925 1.47598 1.86501 1.21075 1.35802 1.82459 1.22505 0.74994 0.98366 0.98778 1.18899 0.96279 0.92205 0.92384 1.20650 1.15532 1.19884 0.97885 0.92223 1.25771 0.94939 0.96457 1.00892 1.70119 1.22683 1.31280 1.30879 0.85621 0.77258 0.79839 0.79346 1.20324 1.21175 1.18733 1.23023 1.02176 0.99565 0.96345 1.22479 0.91485 1.01225 1.03601 0.92091 0.91950 0.89105 0.86753 0.86540 0.73499 0.92235 0.92914 0.84152 0.83237 0.94387 0.93416 0.93084 0.88960 0.89416 0.91238 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -8.13 10.24 -129.94 -1.33 -9.46 16 3 C 0.05 0.60 6.42 71.24 0.46 1.06 16 4 C 0.50 11.01 7.91 87.66 0.69 11.70 16 5 O -0.58 -20.43 16.50 16.01 0.26 -20.17 16 6 N -0.71 -11.07 5.56 -463.07 -2.57 -13.64 16 7 C 0.14 3.21 4.96 86.38 0.43 3.63 16 8 C -0.11 -2.14 5.93 29.85 0.18 -1.96 16 9 C 0.45 15.68 7.96 71.24 0.57 16.25 16 10 O -0.56 -23.60 15.73 21.95 0.35 -23.25 16 11 O -0.34 -13.99 10.16 -51.42 -0.52 -14.51 16 12 C 0.13 5.99 5.29 71.98 0.38 6.38 16 13 C 0.00 0.13 1.62 -52.93 -0.09 0.05 16 14 C -0.50 -26.73 8.78 25.60 0.22 -26.51 16 15 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 16 C 0.02 1.05 5.38 84.65 0.46 1.51 16 17 N -0.91 -51.99 12.88 21.45 0.28 -51.72 16 18 Si 0.95 42.45 29.54 68.60 2.03 44.47 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 C -0.17 -7.08 9.96 30.62 0.30 -6.77 16 23 C -0.15 -6.86 9.37 30.62 0.29 -6.57 16 24 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.43 2.44 8.47 -92.71 -0.79 1.65 16 30 H 0.06 1.64 8.10 -2.38 -0.02 1.62 16 31 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 32 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.15 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.04 2.04 8.13 -2.39 -0.02 2.03 16 35 H 0.05 2.11 8.08 -2.39 -0.02 2.10 16 36 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.09 3.26 8.14 -2.39 -0.02 3.25 16 38 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 39 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -80.27 353.08 3.88 -76.40 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.25 Total: 11.62 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 5.14 Total: 0.26 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -2.30 Total: -65.36 kcal Atomic # 8 Polarization: -66.14 SS G_CDS: -1.24 Total: -67.39 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -80.27 3.88 -76.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327070435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.538 kcal (2) G-P(sol) polarization free energy of solvation -80.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds