Wall clock time and date at job start Tue Mar 31 2020 06:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99975 * 2 1 4 4 C 1.52999 * 109.46907 * 290.62189 * 3 2 1 5 5 N 1.46499 * 109.46962 * 180.02562 * 4 3 2 6 6 C 1.38821 * 120.00030 * 179.97438 * 5 4 3 7 7 C 1.39791 * 119.58584 * 359.97438 * 6 5 4 8 8 C 1.38597 * 119.49413 * 180.02562 * 7 6 5 9 9 C 1.38392 * 118.67832 * 359.97438 * 8 7 6 10 10 C 1.40554 * 119.15035 * 0.02562 * 9 8 7 11 11 C 1.41319 * 119.78437 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99949 * 5.66998 * 11 10 9 13 13 C 1.40020 * 119.99788 * 185.67289 * 11 10 9 14 14 N 1.30749 * 119.99897 * 183.81430 * 13 11 10 15 15 Si 1.86799 * 120.00141 * 3.54012 * 13 11 10 16 16 H 1.48509 * 109.47353 * 180.27795 * 15 13 11 17 17 H 1.48507 * 109.47113 * 300.27492 * 15 13 11 18 18 H 1.48502 * 109.47445 * 60.27700 * 15 13 11 19 19 N 1.31959 * 119.58369 * 180.29402 * 6 5 4 20 20 C 1.46895 * 111.00193 * 123.95769 * 2 1 3 21 21 C 1.53008 * 109.47107 * 158.45873 * 20 2 1 22 22 F 1.39900 * 109.46948 * 305.22700 * 21 20 2 23 23 F 1.39908 * 109.46945 * 65.22177 * 21 20 2 24 24 H 1.08998 * 109.47523 * 65.65302 * 1 2 3 25 25 H 1.09002 * 109.47321 * 185.66134 * 1 2 3 26 26 H 1.09005 * 109.46771 * 305.65251 * 1 2 3 27 27 H 1.08998 * 109.46677 * 170.62418 * 3 2 1 28 28 H 1.08994 * 109.47173 * 50.62025 * 3 2 1 29 29 H 1.08998 * 109.47429 * 59.99820 * 4 3 2 30 30 H 1.09005 * 109.47465 * 299.99625 * 4 3 2 31 31 H 0.97001 * 120.00283 * 359.97438 * 5 4 3 32 32 H 1.07997 * 120.25380 * 0.05130 * 7 6 5 33 33 H 1.07992 * 120.66283 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.42393 * 180.02562 * 9 8 7 35 35 H 0.97000 * 120.00099 * 354.66539 * 14 13 11 36 36 H 1.08999 * 109.47052 * 278.45397 * 20 2 1 37 37 H 1.08994 * 109.47518 * 38.45719 * 20 2 1 38 38 H 1.08998 * 109.46797 * 185.22408 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7039 2.0296 -1.3501 5 7 2.2294 3.3971 -1.3503 6 6 2.0834 4.1966 -2.4757 7 6 1.4340 3.6879 -3.6042 8 6 1.2897 4.4876 -4.7270 9 6 1.7967 5.7749 -4.6951 10 6 2.4397 6.2288 -3.5305 11 6 2.9629 7.5407 -3.4835 12 1 2.7887 8.2212 -4.3038 13 6 3.7071 7.9582 -2.3733 14 7 4.1277 9.1937 -2.2954 15 14 4.0924 6.7520 -1.0000 16 1 4.8814 7.4382 0.0547 17 1 2.8246 6.2434 -0.4176 18 1 4.8778 5.6156 -1.5451 19 7 2.5651 5.4251 -2.4690 20 6 1.9955 -0.7660 1.1375 21 6 3.4309 -1.2027 0.8377 22 9 3.4622 -1.9022 -0.3735 23 9 4.2522 -0.0737 0.7455 24 1 -0.3634 0.4236 -0.9362 25 1 -0.3634 -1.0227 0.1014 26 1 -0.3633 0.5990 0.8351 27 1 3.0722 1.3472 0.1674 28 1 1.5170 1.9443 0.7943 29 1 0.6271 2.0537 -1.5176 30 1 2.1824 1.4568 -2.1445 31 1 2.6794 3.7439 -0.5641 32 1 1.0472 2.6795 -3.6011 33 1 0.7916 4.1136 -5.6092 34 1 1.6997 6.4224 -5.5540 35 1 3.9917 9.8003 -3.0401 36 1 1.9846 -0.1426 2.0315 37 1 1.3745 -1.6467 1.3011 38 1 3.7893 -1.8482 1.6395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331554748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:22 Heat of formation + Delta-G solvation = -72.711322 kcal Electronic energy + Delta-G solvation = -22366.567629 eV Core-core repulsion = 18686.089420 eV Total energy + Delta-G solvation = -3680.478209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.07754 -47.07360 -38.84651 -37.97324 -35.22116 -33.45920 -31.22133 -30.73314 -29.60208 -27.77801 -25.36372 -25.23261 -22.89040 -21.90321 -21.20957 -20.19927 -18.25765 -17.86070 -17.52301 -16.85888 -16.52162 -15.67416 -15.31660 -14.90533 -14.76937 -14.36691 -14.12901 -13.85726 -13.71348 -13.42057 -13.37271 -12.86575 -12.77448 -12.71782 -12.46088 -12.13544 -12.06226 -11.74968 -11.59959 -11.46151 -10.78180 -10.61297 -10.50963 -10.20462 -9.53632 -9.46670 -8.92382 -8.76038 -8.40394 -7.59997 -7.13947 -6.82404 -4.70949 2.73919 2.88303 3.20523 3.59432 3.64836 3.75345 3.98366 4.03442 4.16065 4.22606 4.51052 4.65482 4.74601 4.80106 4.94569 5.05550 5.10395 5.22919 5.29338 5.51020 5.66863 5.68587 5.90054 5.96055 6.05508 6.35309 6.55338 6.56777 6.58645 6.68124 6.72191 7.31637 7.50402 7.53681 7.66990 7.94530 8.07511 8.35265 8.53482 8.79824 9.65673 10.08211 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.004231 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.022323 B = 6616.157857 C = 7372.527274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.533 5.533 3 C 0.025 3.975 4 C 0.147 3.853 5 N -0.741 5.741 6 C 0.443 3.557 7 C -0.364 4.364 8 C -0.016 4.016 9 C -0.307 4.307 10 C 0.287 3.713 11 C -0.477 4.477 12 H 0.081 0.919 13 C 0.045 3.955 14 N -0.809 5.809 15 Si 1.159 2.841 16 H -0.337 1.337 17 H -0.282 1.282 18 H -0.294 1.294 19 N -0.621 5.621 20 C 0.002 3.998 21 C 0.268 3.732 22 F -0.195 7.195 23 F -0.202 7.202 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.100 0.900 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.394 0.606 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.282 0.718 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 -20.183 9.005 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.257 5.257 3 C -0.103 4.103 4 C 0.021 3.979 5 N -0.377 5.377 6 C 0.206 3.794 7 C -0.390 4.390 8 C -0.040 4.040 9 C -0.330 4.330 10 C 0.163 3.837 11 C -0.509 4.509 12 H 0.099 0.901 13 C -0.176 4.176 14 N -0.431 5.431 15 Si 0.996 3.004 16 H -0.272 1.272 17 H -0.210 1.210 18 H -0.222 1.222 19 N -0.350 5.350 20 C -0.128 4.128 21 C 0.214 3.786 22 F -0.177 7.177 23 F -0.183 7.183 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.228 0.772 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.525 -20.247 10.533 23.094 hybrid contribution -1.332 0.509 -1.590 2.136 sum -4.857 -19.738 8.943 22.207 Atomic orbital electron populations 1.22513 0.86148 1.01882 1.02055 1.61771 1.08798 1.14110 1.41060 1.22707 1.02680 0.87353 0.97526 1.20969 0.98362 0.82230 0.96357 1.44145 1.65699 1.12453 1.15437 1.18034 0.88693 0.87317 0.85346 1.20484 1.20615 1.01662 0.96227 1.20708 0.94205 0.93421 0.95709 1.21394 1.13978 0.97387 1.00216 1.18271 0.87669 0.91672 0.86097 1.20746 1.28146 0.96374 1.05632 0.90064 1.27805 0.90073 0.98005 1.01736 1.70657 1.35239 1.04590 1.32648 0.81733 0.75777 0.70883 0.72038 1.27184 1.21019 1.22234 1.65969 1.33561 1.05205 1.30232 1.23256 0.94878 1.00629 0.94036 1.21974 0.90306 0.81345 0.84958 1.93007 1.97095 1.78814 1.48739 1.92925 1.74781 1.53822 1.96788 0.90291 0.91209 0.95117 0.88213 0.93838 0.92734 0.91650 0.77205 0.88142 0.88186 0.88159 0.90706 0.91321 0.87781 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.29 60.06 0.56 0.74 16 2 N -0.53 -5.40 4.49 -242.92 -1.09 -6.49 16 3 C 0.03 0.30 4.88 -3.82 -0.02 0.28 16 4 C 0.15 2.20 4.88 -4.04 -0.02 2.18 16 5 N -0.74 -14.23 5.72 -60.39 -0.35 -14.58 16 6 C 0.44 10.35 7.65 -155.32 -1.19 9.17 16 7 C -0.36 -7.98 9.34 -38.87 -0.36 -8.35 16 8 C -0.02 -0.36 10.15 -39.39 -0.40 -0.76 16 9 C -0.31 -7.60 9.83 -38.65 -0.38 -7.98 16 10 C 0.29 7.85 6.40 -85.00 -0.54 7.30 16 11 C -0.48 -13.54 9.57 -37.74 -0.36 -13.90 16 12 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 13 C 0.04 1.26 5.52 -17.34 -0.10 1.16 16 14 N -0.81 -22.79 13.65 55.55 0.76 -22.03 16 15 Si 1.16 29.51 25.57 -169.99 -4.35 25.16 16 16 H -0.34 -8.48 7.11 56.52 0.40 -8.07 16 17 H -0.28 -7.06 6.64 56.52 0.38 -6.68 16 18 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 19 N -0.62 -16.40 4.54 -10.33 -0.05 -16.44 16 20 C 0.00 0.01 5.39 -3.82 -0.02 -0.01 16 21 C 0.27 2.16 5.59 37.16 0.21 2.37 16 22 F -0.20 -2.17 17.16 2.25 0.04 -2.13 16 23 F -0.20 -2.27 14.65 2.25 0.03 -2.23 16 24 H 0.08 0.73 6.85 -51.93 -0.36 0.37 16 25 H 0.07 0.46 7.83 -51.93 -0.41 0.06 16 26 H 0.03 0.24 8.03 -51.93 -0.42 -0.17 16 27 H 0.10 1.29 5.29 -51.93 -0.27 1.02 16 28 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16 29 H 0.05 0.79 6.57 -51.93 -0.34 0.45 16 30 H 0.07 1.05 7.92 -51.93 -0.41 0.64 16 31 H 0.39 7.39 8.59 -40.82 -0.35 7.04 16 32 H 0.10 1.94 6.68 -52.49 -0.35 1.59 16 33 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 35 H 0.28 7.58 8.72 -40.82 -0.36 7.22 16 36 H 0.07 0.42 7.97 -51.93 -0.41 0.01 16 37 H 0.10 0.51 7.71 -51.93 -0.40 0.11 16 38 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 317.59 15.07 4.79 4.79 Total: -1.00 -32.19 317.59 -7.84 -40.04 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.01 Total: 1.73 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.62 Total: -7.80 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.73 Total: -59.55 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.07 Total: -4.37 kcal Atomic # 14 Polarization: 29.51 SS G_CDS: -4.35 Total: 25.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.19 -7.84 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331554748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.672 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds