Wall clock time and date at job start Tue Mar 31 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99975 * 2 1 4 4 C 1.52999 * 109.46907 * 290.62189 * 3 2 1 5 5 N 1.46499 * 109.46962 * 180.02562 * 4 3 2 6 6 C 1.38821 * 120.00030 * 179.97438 * 5 4 3 7 7 C 1.39791 * 119.58584 * 359.97438 * 6 5 4 8 8 C 1.38597 * 119.49413 * 180.02562 * 7 6 5 9 9 C 1.38392 * 118.67832 * 359.97438 * 8 7 6 10 10 C 1.40554 * 119.15035 * 0.02562 * 9 8 7 11 11 C 1.41319 * 119.78437 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99949 * 5.66998 * 11 10 9 13 13 C 1.40020 * 119.99788 * 185.67289 * 11 10 9 14 14 N 1.30749 * 119.99897 * 183.81430 * 13 11 10 15 15 Si 1.86799 * 120.00141 * 3.54012 * 13 11 10 16 16 H 1.48509 * 109.47353 * 180.27795 * 15 13 11 17 17 H 1.48507 * 109.47113 * 300.27492 * 15 13 11 18 18 H 1.48502 * 109.47445 * 60.27700 * 15 13 11 19 19 N 1.31959 * 119.58369 * 180.29402 * 6 5 4 20 20 C 1.46895 * 111.00193 * 123.95769 * 2 1 3 21 21 C 1.53008 * 109.47107 * 158.45873 * 20 2 1 22 22 F 1.39900 * 109.46948 * 305.22700 * 21 20 2 23 23 F 1.39908 * 109.46945 * 65.22177 * 21 20 2 24 24 H 1.08998 * 109.47523 * 65.65302 * 1 2 3 25 25 H 1.09002 * 109.47321 * 185.66134 * 1 2 3 26 26 H 1.09005 * 109.46771 * 305.65251 * 1 2 3 27 27 H 1.08998 * 109.46677 * 170.62418 * 3 2 1 28 28 H 1.08994 * 109.47173 * 50.62025 * 3 2 1 29 29 H 1.08998 * 109.47429 * 59.99820 * 4 3 2 30 30 H 1.09005 * 109.47465 * 299.99625 * 4 3 2 31 31 H 0.97001 * 120.00283 * 359.97438 * 5 4 3 32 32 H 1.07997 * 120.25380 * 0.05130 * 7 6 5 33 33 H 1.07992 * 120.66283 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.42393 * 180.02562 * 9 8 7 35 35 H 0.97000 * 120.00099 * 354.66539 * 14 13 11 36 36 H 1.08999 * 109.47052 * 278.45397 * 20 2 1 37 37 H 1.08994 * 109.47518 * 38.45719 * 20 2 1 38 38 H 1.08998 * 109.46797 * 185.22408 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7039 2.0296 -1.3501 5 7 2.2294 3.3971 -1.3503 6 6 2.0834 4.1966 -2.4757 7 6 1.4340 3.6879 -3.6042 8 6 1.2897 4.4876 -4.7270 9 6 1.7967 5.7749 -4.6951 10 6 2.4397 6.2288 -3.5305 11 6 2.9629 7.5407 -3.4835 12 1 2.7887 8.2212 -4.3038 13 6 3.7071 7.9582 -2.3733 14 7 4.1277 9.1937 -2.2954 15 14 4.0924 6.7520 -1.0000 16 1 4.8814 7.4382 0.0547 17 1 2.8246 6.2434 -0.4176 18 1 4.8778 5.6156 -1.5451 19 7 2.5651 5.4251 -2.4690 20 6 1.9955 -0.7660 1.1375 21 6 3.4309 -1.2027 0.8377 22 9 3.4622 -1.9022 -0.3735 23 9 4.2522 -0.0737 0.7455 24 1 -0.3634 0.4236 -0.9362 25 1 -0.3634 -1.0227 0.1014 26 1 -0.3633 0.5990 0.8351 27 1 3.0722 1.3472 0.1674 28 1 1.5170 1.9443 0.7943 29 1 0.6271 2.0537 -1.5176 30 1 2.1824 1.4568 -2.1445 31 1 2.6794 3.7439 -0.5641 32 1 1.0472 2.6795 -3.6011 33 1 0.7916 4.1136 -5.6092 34 1 1.6997 6.4224 -5.5540 35 1 3.9917 9.8003 -3.0401 36 1 1.9846 -0.1426 2.0315 37 1 1.3745 -1.6467 1.3011 38 1 3.7893 -1.8482 1.6395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331554748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:21 Heat of formation + Delta-G solvation = -94.106596 kcal Electronic energy + Delta-G solvation = -22367.495397 eV Core-core repulsion = 18686.089420 eV Total energy + Delta-G solvation = -3681.405977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.77825 -47.80246 -40.62707 -38.91061 -36.76260 -35.39686 -33.00208 -32.07948 -30.66836 -29.03736 -27.19505 -26.21664 -23.86182 -23.65785 -22.21246 -21.89697 -20.30047 -18.50609 -18.40093 -18.08666 -17.52722 -17.14177 -16.49598 -16.28536 -15.99840 -15.79419 -15.47849 -15.15334 -14.88144 -14.74348 -14.44503 -14.25132 -14.16604 -14.13519 -13.62457 -13.37369 -13.17577 -12.93405 -12.69375 -12.52606 -12.37536 -12.32977 -12.13949 -11.59320 -11.50893 -11.33436 -10.76510 -10.30442 -9.63876 -9.46809 -9.19459 -8.58990 -6.79872 0.78660 1.01060 1.56939 1.72516 2.00681 2.21485 2.47994 2.70608 2.93203 3.11587 3.49939 3.65816 3.66821 3.86539 4.02337 4.08406 4.18142 4.41466 4.46774 4.51672 4.55740 4.64413 4.65680 4.73426 4.80914 4.83094 4.92765 4.99830 5.07460 5.39558 5.47560 5.68649 5.81358 5.86272 5.91163 5.97364 6.17400 6.56254 6.57999 6.88364 7.71939 7.97698 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.004231 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.022323 B = 6616.157857 C = 7372.527274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.035 3.965 4 C 0.147 3.853 5 N -0.735 5.735 6 C 0.424 3.576 7 C -0.348 4.348 8 C -0.007 4.007 9 C -0.330 4.330 10 C 0.272 3.728 11 C -0.514 4.514 12 H 0.065 0.935 13 C 0.017 3.983 14 N -0.834 5.834 15 Si 1.196 2.804 16 H -0.334 1.334 17 H -0.278 1.278 18 H -0.302 1.302 19 N -0.641 5.641 20 C 0.002 3.998 21 C 0.255 3.745 22 F -0.216 7.216 23 F -0.224 7.224 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.395 0.605 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.280 0.720 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 -23.603 9.986 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.274 5.274 3 C -0.093 4.093 4 C 0.022 3.978 5 N -0.370 5.370 6 C 0.187 3.813 7 C -0.373 4.373 8 C -0.031 4.031 9 C -0.353 4.353 10 C 0.146 3.854 11 C -0.547 4.547 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.458 5.458 15 Si 1.030 2.970 16 H -0.269 1.269 17 H -0.206 1.206 18 H -0.231 1.231 19 N -0.371 5.371 20 C -0.127 4.127 21 C 0.201 3.799 22 F -0.198 7.198 23 F -0.205 7.205 24 H 0.086 0.914 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.229 0.771 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.150 0.850 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.963 -23.708 11.535 26.828 hybrid contribution -1.021 1.279 -1.942 2.539 sum -5.985 -22.430 9.593 25.118 Atomic orbital electron populations 1.22550 0.85101 1.03255 1.01682 1.61736 1.09838 1.12742 1.43050 1.22510 1.02335 0.88731 0.95728 1.21147 0.98528 0.79976 0.98129 1.44366 1.64967 1.13468 1.14215 1.18494 0.88664 0.86970 0.87193 1.20958 1.18206 1.02860 0.95269 1.21166 0.92743 0.92028 0.97182 1.21546 1.14969 0.99041 0.99742 1.18433 0.87999 0.91562 0.87363 1.20738 1.30601 0.97430 1.05945 0.91702 1.28509 0.89906 0.98612 1.02917 1.70671 1.37161 1.04980 1.32976 0.81230 0.75491 0.69449 0.70798 1.26884 1.20609 1.23117 1.65883 1.34324 1.06570 1.30312 1.23412 0.94517 1.01455 0.93328 1.22657 0.90878 0.81251 0.85107 1.92960 1.97214 1.79214 1.50369 1.92880 1.75556 1.55224 1.96877 0.91363 0.89168 0.94618 0.89182 0.93231 0.91701 0.92400 0.77097 0.84836 0.83905 0.87702 0.90953 0.89951 0.84992 0.82744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.29 127.69 1.19 1.47 16 2 N -0.55 -9.45 4.49 -922.46 -4.14 -13.60 16 3 C 0.04 0.77 4.88 86.30 0.42 1.19 16 4 C 0.15 4.02 4.88 86.38 0.42 4.44 16 5 N -0.74 -26.78 5.72 -344.99 -1.97 -28.76 16 6 C 0.42 19.03 7.65 133.42 1.02 20.05 16 7 C -0.35 -14.07 9.34 22.73 0.21 -13.85 16 8 C -0.01 -0.30 10.15 22.39 0.23 -0.07 16 9 C -0.33 -16.10 9.83 22.87 0.22 -15.87 16 10 C 0.27 14.99 6.40 40.18 0.26 15.25 16 11 C -0.51 -30.29 9.57 23.46 0.22 -30.06 16 12 H 0.06 3.88 8.05 -2.91 -0.02 3.85 16 13 C 0.02 0.96 5.52 85.29 0.47 1.43 16 14 N -0.83 -48.62 13.65 21.84 0.30 -48.32 16 15 Si 1.20 61.05 25.57 68.60 1.75 62.81 16 16 H -0.33 -16.64 7.11 99.48 0.71 -15.93 16 17 H -0.28 -13.79 6.64 99.48 0.66 -13.12 16 18 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 19 N -0.64 -33.57 4.54 -186.59 -0.85 -34.42 16 20 C 0.00 0.02 5.39 86.31 0.47 0.48 16 21 C 0.25 3.39 5.59 71.98 0.40 3.80 16 22 F -0.22 -4.37 17.16 44.97 0.77 -3.60 16 23 F -0.22 -4.66 14.65 44.97 0.66 -4.00 16 24 H 0.07 1.05 6.85 -2.39 -0.02 1.03 16 25 H 0.09 0.84 7.83 -2.39 -0.02 0.82 16 26 H 0.04 0.45 8.03 -2.38 -0.02 0.43 16 27 H 0.09 2.17 5.29 -2.39 -0.01 2.16 16 28 H 0.05 1.01 8.00 -2.39 -0.02 0.99 16 29 H 0.06 1.68 6.57 -2.39 -0.02 1.66 16 30 H 0.06 1.70 7.92 -2.38 -0.02 1.68 16 31 H 0.39 14.23 8.59 -92.71 -0.80 13.43 16 32 H 0.13 4.52 6.68 -2.91 -0.02 4.50 16 33 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 34 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.28 15.77 8.72 -92.71 -0.81 14.96 16 36 H 0.08 0.70 7.97 -2.39 -0.02 0.68 16 37 H 0.13 0.68 7.71 -2.39 -0.02 0.66 16 38 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -70.88 317.59 2.25 -68.62 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.20 Total: 13.01 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.53 Total: -11.74 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.67 Total: -125.09 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 1.43 Total: -7.60 kcal Atomic # 14 Polarization: 61.05 SS G_CDS: 1.75 Total: 62.81 kcal Total: -70.88 2.25 -68.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331554748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.483 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds