Wall clock time and date at job start Tue Mar 31 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47438 * 2 1 4 4 C 1.52999 * 109.46901 * 239.99628 * 2 1 3 5 5 O 1.45202 * 109.47116 * 120.00000 * 2 1 3 6 6 C 1.34637 * 116.99706 * 59.99320 * 5 2 1 7 7 O 1.21510 * 120.00286 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99756 * 179.97438 * 6 5 2 9 9 C 1.47749 * 125.82269 * 359.91031 * 8 6 5 10 10 C 1.54916 * 104.83975 * 155.83043 * 9 8 6 11 11 C 1.55157 * 101.58244 * 37.09214 * 10 9 8 12 12 C 1.47021 * 125.64938 * 180.02562 * 8 6 5 13 13 H 1.09001 * 109.88190 * 300.60111 * 12 8 6 14 14 C 1.50701 * 109.88182 * 61.60718 * 12 8 6 15 15 O 1.21209 * 120.00099 * 18.28777 * 14 12 8 16 16 O 1.34316 * 120.00075 * 198.28198 * 14 12 8 17 17 C 1.34914 * 116.99748 * 180.02562 * 16 14 12 18 18 H 1.08003 * 120.00387 * 0.02562 * 17 16 14 19 19 C 1.38756 * 120.00021 * 180.02562 * 17 16 14 20 20 N 1.31442 * 120.00309 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99592 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99687 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99867 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99860 * 21 19 17 25 25 H 1.09001 * 109.46966 * 300.00438 * 1 2 3 26 26 H 1.09000 * 109.47035 * 59.99643 * 1 2 3 27 27 H 1.08992 * 109.47535 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46884 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46804 * 299.99607 * 3 2 1 30 30 H 1.08996 * 109.46957 * 59.99712 * 3 2 1 31 31 H 1.09002 * 109.47332 * 300.00554 * 4 2 1 32 32 H 1.09001 * 109.47119 * 60.00815 * 4 2 1 33 33 H 1.09004 * 109.47181 * 179.97438 * 4 2 1 34 34 H 1.09001 * 110.29163 * 37.02778 * 9 8 6 35 35 H 1.08994 * 110.53044 * 274.75182 * 9 8 6 36 36 H 1.09005 * 110.99958 * 279.02200 * 10 9 8 37 37 H 1.08999 * 111.03527 * 155.18810 * 10 9 8 38 38 H 1.08999 * 110.72097 * 206.13618 * 11 10 9 39 39 H 1.09003 * 110.86603 * 82.93618 * 11 10 9 40 40 H 0.96998 * 120.00121 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9513 -2.5096 0.5037 8 7 2.0678 -2.6657 2.4167 9 6 2.9214 -2.1438 3.5039 10 6 2.6007 -3.0411 4.7254 11 6 2.4135 -4.4270 4.0534 12 6 1.7491 -4.0713 2.7067 13 1 0.6691 -4.1987 2.7813 14 6 2.2951 -4.9563 1.6160 15 8 3.1581 -4.5405 0.8733 16 8 1.8256 -6.2058 1.4668 17 6 2.3575 -6.9452 0.4716 18 1 3.1255 -6.5260 -0.1616 19 6 1.9179 -8.2444 0.2613 20 7 2.4364 -8.9650 -0.7080 21 14 0.5891 -8.9693 1.3559 22 1 1.2189 -9.6359 2.5240 23 1 -0.1998 -9.9634 0.5847 24 1 -0.3084 -7.8850 1.8294 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6765 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1299 -0.7210 -1.2495 34 1 2.6675 -1.1058 3.7187 35 1 3.9747 -2.2286 3.2372 36 1 1.6831 -2.7182 5.2172 37 1 3.4335 -3.0570 5.4285 38 1 1.7584 -5.0603 4.6515 39 1 3.3756 -4.9133 3.8919 40 1 2.1293 -9.8733 -0.8547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331688223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:42 Heat of formation + Delta-G solvation = -150.667094 kcal Electronic energy + Delta-G solvation = -24022.416519 eV Core-core repulsion = 20417.352659 eV Total energy + Delta-G solvation = -3605.063860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72418 -39.44998 -37.97353 -36.24622 -35.10047 -33.95688 -32.24738 -31.40493 -29.66535 -27.41302 -27.26997 -25.56723 -24.25591 -21.96558 -21.58879 -19.99180 -18.90870 -17.96776 -17.61906 -17.26846 -16.42138 -15.78748 -15.37720 -15.03668 -14.77037 -14.33586 -14.20981 -13.82033 -13.51951 -13.22560 -13.07418 -12.58996 -12.49814 -12.43488 -12.23504 -12.01203 -11.85125 -11.76644 -11.64292 -11.32798 -11.28829 -11.17490 -11.08940 -10.87351 -10.41483 -10.32220 -10.21904 -9.78406 -9.64546 -9.28532 -8.61739 -8.49215 -6.30426 -4.05338 2.15016 3.11577 3.18381 3.28098 3.38812 3.44305 3.90017 4.24350 4.30598 4.51005 4.62376 4.76047 4.79375 4.94105 4.95609 5.17648 5.27095 5.42474 5.44743 5.53699 5.58504 5.63176 5.68338 5.70985 5.78022 5.84009 5.88833 5.93320 5.98890 6.06754 6.21918 6.35423 6.48806 6.53663 6.64287 7.64907 7.79741 8.10568 8.59037 8.70474 9.08018 9.74386 10.78416 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.005325 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.358981 B = 5257.208794 C = 6100.705438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.674 3.326 7 O -0.551 6.551 8 N -0.587 5.587 9 C 0.106 3.894 10 C -0.130 4.130 11 C -0.119 4.119 12 C 0.171 3.829 13 H 0.103 0.897 14 C 0.405 3.595 15 O -0.526 6.526 16 O -0.250 6.250 17 C -0.376 4.376 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.877 5.877 21 Si 0.904 3.096 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 17.752 10.157 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.242 4.242 5 O -0.278 6.278 6 C 0.429 3.571 7 O -0.438 6.438 8 N -0.329 5.329 9 C -0.017 4.017 10 C -0.168 4.168 11 C -0.157 4.157 12 C 0.067 3.933 13 H 0.121 0.879 14 C 0.249 3.751 15 O -0.419 6.419 16 O -0.159 6.159 17 C -0.452 4.452 18 H 0.125 0.875 19 C -0.138 4.138 20 N -0.517 5.517 21 Si 0.729 3.271 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.456 17.598 9.432 20.117 hybrid contribution -0.444 -0.492 0.058 0.666 sum -2.900 17.106 9.490 19.776 Atomic orbital electron populations 1.22516 0.94181 1.05211 1.02091 1.22039 0.94226 0.91313 0.82501 1.21834 1.02232 0.92642 1.02774 1.22514 1.01748 1.03898 0.95994 1.86250 1.71732 1.23614 1.46232 1.17311 0.78853 0.80196 0.80690 1.90951 1.41110 1.70074 1.41646 1.46798 1.53637 1.10493 1.21963 1.22388 0.95169 0.98346 0.85756 1.22809 1.02967 0.94400 0.96672 1.22634 1.02626 0.97804 0.92621 1.20833 1.01143 0.78448 0.92891 0.87903 1.22998 0.83200 0.82704 0.86213 1.90596 1.31892 1.74253 1.45156 1.83497 1.58808 1.23430 1.50137 1.20613 1.21776 0.94622 1.08174 0.87515 1.24524 0.97846 0.94879 0.96548 1.69610 1.42174 1.10136 1.29771 0.86235 0.81576 0.79095 0.80159 1.19857 1.20792 1.18352 0.92406 0.91281 0.89239 0.91525 0.90291 0.91697 0.88952 0.91420 0.92125 0.89979 0.90960 0.90135 0.89206 0.88400 0.89438 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 2 C 0.14 1.87 1.13 -90.62 -0.10 1.76 16 3 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 4 C -0.18 -2.79 8.37 37.16 0.31 -2.48 16 5 O -0.36 -5.88 9.43 -40.32 -0.38 -6.27 16 6 C 0.67 12.91 7.32 54.05 0.40 13.30 16 7 O -0.55 -12.27 11.68 -19.28 -0.23 -12.50 16 8 N -0.59 -10.17 2.76 -169.80 -0.47 -10.64 16 9 C 0.11 1.31 6.94 -2.35 -0.02 1.29 16 10 C -0.13 -1.25 7.09 -24.58 -0.17 -1.43 16 11 C -0.12 -1.56 6.47 -24.90 -0.16 -1.72 16 12 C 0.17 3.12 3.36 -68.11 -0.23 2.89 16 13 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 14 C 0.41 10.10 6.35 36.01 0.23 10.33 16 15 O -0.53 -14.86 15.35 -19.05 -0.29 -15.15 16 16 O -0.25 -6.89 8.58 -20.70 -0.18 -7.07 16 17 C -0.38 -11.63 10.10 30.92 0.31 -11.32 16 18 H 0.11 3.67 7.09 -52.48 -0.37 3.29 16 19 C 0.07 1.93 5.49 -17.53 -0.10 1.83 16 20 N -0.88 -26.75 13.96 55.48 0.77 -25.98 16 21 Si 0.90 21.90 28.62 -169.99 -4.86 17.04 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.44 5.88 -51.93 -0.31 1.13 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.78 5.88 -51.93 -0.31 1.48 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.25 7.84 -51.93 -0.41 0.84 16 40 H 0.28 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -36.97 332.31 -5.53 -42.50 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.02 Total: 1.66 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 1.11 Total: 11.39 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.30 Total: -36.61 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.08 Total: -40.98 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.97 -5.53 -42.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331688223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.166 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds